Team:Waterloo/Math Book

From 2014.igem.org

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   This page gathers the detailed process information for the mathematical models created by the team this year. Code related to the models can be accessed from <a href="https://github.com/alexanian/uwaterloo-igem-2014">this github page</a>.
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  <p>Our <b>Math Book</b> is meant to be the mathematical modeling equivalent of a lab book, where we store everything another team might need to recreate our models. You can access code related to the models can be accessed from <a href="https://github.com/alexanian/uwaterloo-igem-2014">this GitHub page</a>.</p>
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<h3>We hope you enjoy learning more about our model on the subpages!</h3>
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<p>We created mathematical models of the three main aspects of the Staphylocide system: <a href="https://2014.igem.org/Team:Waterloo/Math_Book/CRISPRi">CRISPR Interference</a>, <a href="https://2014.igem.org/Team:Waterloo/Math_Book/sRNA">RNA Interference</a> and <a href="https://2014.igem.org/Team:Waterloo/Math_Book/Conjugation">Conjugation</a> and have created sub-pages for each of them that detail all the steps in our analysis.</p>
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<p>&nbsp;</p>
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     <li><a href="#view0">CRISPR</a></li>
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     <li><a href="https://2014.igem.org/Team:Waterloo/Math_Book/CRISPRi">CRISPRi</a></li>
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     <li><a href="#view1">sRNA</a></li>
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     <li><a href="https://2014.igem.org/Team:Waterloo/Math_Book/sRNA">RNAi</a></li>
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     <li><a href="#view2">Conjugation</a></li>
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     <li><a href="https://2014.igem.org/Team:Waterloo/Math_Book/Conjugation">Conjugation</a></li>
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    <li><a href="https://2014.igem.org/Team:Waterloo/Math_Book/References">Bibliography</a></li>
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      <h2>CRISPR</h2>
 
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      <h3> Model Formation </h3>
 
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          <h4> Modelling Incomplete Repression </h4>
 
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      <h3> Parameters </h3>
 
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          <h4> Production of dCas9 from dCas9 mRNA </h4>
 
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          <h4> Degradation rate of dCas9 </h4>
 
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          <h4> mRNA production from the <em>sarA</em> promoter </h4>
 
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      <h3> Initial Model Results </h3>
 
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      <h3> Updating mRNA Production Rates </h3>
 
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      <h3> Sensitivity Analysis </h3>
 
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      <h2>sRNA</h2>
 
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      <h3> Relevant Biology </h3>
 
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      <h3> Model Formation </h3>
 
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      <h3></h3>
 
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    <div class="anchor" id="view2">
 
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      <h2>Conjugation</h2>
 
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Latest revision as of 23:07, 21 November 2014

Math Book

Our Math Book is meant to be the mathematical modeling equivalent of a lab book, where we store everything another team might need to recreate our models. You can access code related to the models can be accessed from this GitHub page.

We hope you enjoy learning more about our model on the subpages!

We created mathematical models of the three main aspects of the Staphylocide system: CRISPR Interference, RNA Interference and Conjugation and have created sub-pages for each of them that detail all the steps in our analysis.

 

Retrieved from "http://2014.igem.org/Team:Waterloo/Math_Book"