Team:Tokyo Tech/Attribution and Contribution

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<title>Tokyo_Tech</title>
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<a href="https://2014.igem.org/Main_Page"><img src="https://static.igem.org/mediawiki/2014/thumb/8/84/Tokyo_Tech_iGEM_logo.png/794px-Tokyo_Tech_iGEM_logo.png" width="90" /></a></div>
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<li><a href="#">Experiment</a>
<li><a href="#">Experiment</a>
  <ul>
  <ul>
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        <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/C4HSL-dependent_3oxoC12HSL_production" style="width:400px; margin-left:-135px;">C4HSL-dependent 3oxoC12HSL production</a></li>
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        <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/Plux and Prhl reporter assay" style="width:400px; margin-left:-135px;">Plux and Prhl reporter assay</a></li>
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        <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/3oxoC12HSL-dependent_C4HSL_production" style="width:400px; margin-left:-135px;">3oxoC12HSL-dependent C4HSL production</a></li>
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        <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/Prhl_reporter_assay" style="width:400px; margin-left:-135px;">Improved Prhl reporter assay</a></li>
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        <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/Symbiosis_confirmation_by_co-culture" style="width:400px; margin-left:-135px;">Symbiosis confirmation by co-culture </a></li>
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        <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/C4HSL-dependent_3OC12HSL_production" style="width:400px; margin-left:-135px;">C4HSL-dependent 3OC12HSL production</a></li>
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        <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/Prhl_reporter_assay" style="width:400px; margin-left:-135px;">Prhl reporter assay </a></li>
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        <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/3OC12HSL-dependent_C4HSL_production" style="width:400px; margin-left:-135px;">3OC12HSL-dependent C4HSL production</a></li>
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        <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/Symbiosis_confirmation_by_co-culture" style="width:400px; margin-left:-135px;">Mutualism Confirmation ~Co-culture Assay~</a></li>
  </ul>
  </ul>
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<li><a href="#">Modeling</a>
<li><a href="#">Modeling</a>
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                            <ul>
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                          <ul>
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                                <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Modeling/Modeling1" style="width:260px; margin-left:-63px;">なぞなぞ</a></li>
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                              <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Modeling/Overview" style="width:400px; margin-left:-135px;">Overview</a></li>
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                                <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Modeling/Modeling2" style="width:260px; margin-left:-63px;">Parameter sensitivity analysis</a></li>
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                              <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Modeling/Growth Conditions For Company And Customer" style="width:400px; margin-left:-135px;">Growth Conditions For Company And Customer</a></li>
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                                <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Modeling/Modeling3" style="width:260px; margin-left:-63px;">The effect of economic wave</a></li>
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                              <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Modeling/Analysis of C4HSL-dependent Switch" style="width:400px; margin-left:-135px;">Analysis of C4HSL-dependent Switch</a></li>
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                            </ul>
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                              <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Modeling/Economic Wave"  style="width:400px; margin-left:-135px;">Economic Wave</a></li>
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                          </ul>
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<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">Parts</a></li>
<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">Parts</a></li>
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<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Policy_and_Practices" style="height:45px; padding-top:4px;">Policy and Practices</a></li>
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<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Policy_and_Practices" style="height:50px; padding-top:3px;">Policy and Practices</a></li>
<li class="current_page_item"><a href="#">More</a>
<li class="current_page_item"><a href="#">More</a>
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      <h2 class="title"><a href="https://2014.igem.org/Team:Tokyo_Tech/Policy_and_Practice">Attribution and Contribution </a></h2>
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          <h2 class="title">Attribution and Contribution</h2>
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             <span class="meta">We could not reach this point without everyone </span>
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             <span class="meta">We could not reach this point without anyone </span>
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              <div id="gototop"><a href="#"><img src="https://static.igem.org/mediawiki/2014/5/55/Tokyo_Tech_Go-to-top-icon.png" height="50" /></a></div>
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                   <td colspan="2" class="info-18">We are proud to say that all the ideas we worked on this summer were proposed by undergraduate members of our team Tokyo_Tech 2014. Moreover, the whole experimental data created by our team comes from experiments all carried out by undergraduates. The "Bank E. coli" project was proposed by Naoto Takahashi. Modeling related to this project was done by Takuya Kato and Ye Kai. We want to thank every advisors and instructors who helped us discussing these ideas and guided us in the experiments.</td>
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                   <td colspan="2"><p class="info-18">We are proud to say that all the ideas we worked on this year were proposed by undergraduate members of our team Tokyo_Tech 2014. Moreover, the whole experimental data created by our team comes from experiments all carried out by undergraduates. The project "Bank <i>E. coli</i>" was proposed by Naoto Takahashi. Modeling related to this project was done by Takuya Kato and Ye Kai. We want to thank every advisers and instructors who helped us with discussing these ideas and guided us in the experiments.</p></td>
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                  <td class="head">Student team members </td>
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<td class="head">Student team members </td>
                   <td>&nbsp;</td>
                   <td>&nbsp;</td>
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                   <td colspan="2">&nbsp;</td>
                   <td colspan="2">&nbsp;</td>
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                   <td colspan="2" class="info-18">All cloning (transformation, culture cells, mini prep):</td>
                   <td colspan="2" class="info-18">All cloning (transformation, culture cells, mini prep):</td>
                 </tr>
                 </tr>
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              <tr>
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                <tr>
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                   <td colspan="2" class="info">     -
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                   <td colspan="2"><p class="info">     - Yuta Kino, Yuya Nakamura, Kohdai Hibi with helping of other team members </p>                  </td>
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                    <em>Yuta Kino</em></td>
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-
                </tr>
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            <tr>
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                  <td colspan="2" class="info">     -
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                    <em>Yuya Nakamura</em></td>
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                </tr>
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            <tr>
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                  <td colspan="2" class="info">     -
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                    <em>Kohdai Hibi</em></td>
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                </tr>
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              <tr>
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                  <td colspan="2" class="info">     -
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                    with helping of other team members</td>
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                 </tr>
                 </tr>
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                 <tr>
                 <tr>
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                   <td colspan="2" class="info">     -
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                   <td colspan="2"><p class="info">     - Yuta Kino, Yuya Nakamura, Kohdai Hibi </p></td>
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                    <em>Yuta Kino</em></td>
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                </tr>
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                <tr>
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                  <td colspan="2" class="info">     -
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                    <em>Yuya Nakamura</em></td>
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                </tr>
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                <tr>
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                  <td colspan="2" class="info">     -
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                    <em>Kohdai Hibi</em></td>
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                   <td colspan="2" class="info-18">AHL-dependent gene expression assay: </td>
                   <td colspan="2" class="info-18">AHL-dependent gene expression assay: </td>
                 </tr>
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                 <tr>
                 <tr>
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                   <td colspan="2" class="info">     -
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                   <td colspan="2"><p class="info">    - Shoko Suzuki, Naoto Takahashi, Keina Matsumura</p></td>
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                    <em>Shoko Suzuki</em></td>
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                </tr>
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                <tr>
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                  <td colspan="2" class="info">     -
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                    <em>Naoto Takahashi</em></td>
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                <tr>
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                  <td colspan="2" class="info">     -
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                    <em>Yuya Nakamura</em></td>
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                </tr>
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                <tr>
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                  <td colspan="2" class="info">     -
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                    <em>Ayaka Murase</em></td>
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                   <td colspan="2" class="info">     -
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                   <td colspan="2"><p class="info">    - Yuya Nakamura, Gyomon Ryu</p></td>
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                    <em>with helping of other team members</em></td>
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                </tr>
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                <tr>
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                  <td colspan="2" class="info">     -
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                    <em>with helping of other team members</em></td>
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                </tr>
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                <tr>
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                  <td colspan="2" class="info">     -
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                    <em>with helping of other team members</em></td>
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                   <td colspan="2" class="info">     -
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                   <td colspan="2"><p class="info">    - Naoto Takahashi, Keina Matsumura, Ayaka Murase </p></td>
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                    <em>Naoto Takahashi</em></td>
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                </tr>
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                  <td colspan="2" class="info">     -
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                    <em>Keina Matsumura</em></td>
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                </tr>
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                  <td colspan="2" class="info">     -
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                    <em>Ayaka Murase</em></td>
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                <td colspan="2" class="info-18">Cysteine production assay:</td>
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                  <td colspan="2" class="info-18">Modeling (simulation of the genetic circuit):</td>
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                </tr>
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                  <td colspan="2" class="info">     -
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                    <em>Ryu Gyomon</em></td>
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                  <td colspan="2" class="info">     -
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                    <em>Shoko Suzuki</em></td>
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                   <td colspan="2" class="info">     -
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                   <td colspan="2" class="info"><p class="info">     - Takuya Kato, Kai Ye </p></td>
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                    <em>Xinan Wang</em></td>
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                <td colspan="2" class="info-18">Modeling (simulation of the genetic circuit):</td>
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                  <td colspan="2" class="info-18">Wiki and slide design: </td>
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                   <td colspan="2" class="info">     -
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                   <td colspan="2" class="info"><p class="info">     - Paniti Achararit, Kai Ye, Riku Shinohara </p></td>
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                    <em>Takuya Kato</em></td>
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                  <td colspan="2" class="info">     -
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                    <em>Kai Ye</em></td>
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                <td colspan="2" class="info-18">Wiki and slide design: </td>
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                   <td colspan="2" class="info-18">Policy and Practices: </td>
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                   <td colspan="2" class="info">     -
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                    <em>Paniti Achararit</em></td>
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                  <td colspan="2" class="info">     -
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                    <em>Kai Ye</em></td>
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                  <td colspan="2" class="info">     -
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                    <em>Riku Shinohara</em></td>
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                  <td colspan="2">&nbsp;</td>
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                <td colspan="2" class="info-18">Policy and Practices: </td>
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                </tr>
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                <tr>
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                  <td colspan="2" class="info">     -
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                    <em>Miyabi Hishinuma</em></td>
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                </tr>
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                <tr>
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                  <td colspan="2" class="info">     -
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                    <em>Ayaka Murase</em></td>
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                   <td colspan="2" class="info">     -
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                   <td colspan="2" class="info"><p class="info">     - Miyabi Hishinuma, Ayaka Murase with helping of other team members </p></td>
-
                    with helping of other team members</td>
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                   <td colspan="2" class="info-18">- Prof. Kiga let us use his lab for all of our experiments. He also has led many Tokyo Tech teams to the excellent results in iGEM since this competition has started.</td>
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                   <td colspan="2" class="info-18">Prof. Kiga let us use his lab for all of our experiments. He also has led many Tokyo Tech teams to the excellent results in iGEM since this competition has started.</td>
                 </tr>
                 </tr>
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                 <tr>
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                   <td colspan="2">&nbsp;</td>
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                   <td colspan="2" class="info-18">Prof. Yamamura and Prof. Konagaya supported us in many ways to give us a better researching environment.&nbsp; </td>
                 </tr>
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                   <td colspan="2" class="info-18">-  Prof. Yamamura and Prof. Konagaya supported us in many ways to give us a better  researching environment.&nbsp; </td>
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                   <td colspan="2" class="info-18">Prof. Ayukawa supported us in all of our experiments throughout the preparations for iGEM.
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                </tr>
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                   </td>
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                <tr>
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                  <td colspan="2">&nbsp;</td>
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                </tr>
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                <tr>
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                  <td colspan="2" class="info-18">- Prof. Ayukawa supported us in our experiment throughout the preparations for iGEM.</td>
+
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                </tr>
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                <tr>
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                  <td colspan="2">&nbsp;</td>
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                </tr>
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                <tr>
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                  <td colspan="2" class="info-18">- Mr. Sekine and Mr. Amikura gave us  the helpful advice for playing an active part in iGEM competition.&nbsp;</td>
+
-
                </tr>
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                <tr>
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                   <td colspan="2">&nbsp;</td>
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                 </tr>
                 </tr>
                 <tr>
                 <tr>
-
                   <td colspan="2" class="info-18">- Promega provided us the part of restriction enzyme we used without any charge.</td>
+
                   <td colspan="2" class="info-18">Promega KK provided us a part of the restriction enzyme we used without any charge.
 +
                  </td>
                 </tr>
                 </tr>
 +
               
                 <tr>
                 <tr>
                   <td colspan="2" class="info-18">&nbsp;</td>
                   <td colspan="2" class="info-18">&nbsp;</td>
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                 </tr>
                 </tr>
                 <tr>
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                   <td colspan="2" class="info-18">- Biomaterial Analysis Center, Technical Department, sequenced the sequence of plasmids which we had asked for. </td>
+
                   <td colspan="2" class="info-18">Biomaterial Analysis Center, Technical Department, checked the sequence of the plasmids which we had asked. </td>
                 </tr>
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                   <td colspan="2" class="head">Human Practice Support</td>
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                   <td colspan="2" class="head">Policy and Practice Support</td>
                 </tr>
                 </tr>
                 <tr>
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                 </tr>
                 <tr>
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                   <td colspan="2" class="info-18">- Mr. Katayama who is working in Tokyo Institute of Technology Graduate  School of Innovation Management gave us his opinion on issues of environmental  and beneficiary survey of our projects.</td>
+
                   <td colspan="2" class="info-18">Tomoya Saito, who is working for National Institute of Public Health, gave us a lecture on dual-use technologies, and gave us useful advice about <a href="https://2014.igem.org/Team:Tokyo_Tech/Policy_and_Practices/Our_question_about_biosafety">biosafety.</a></td>
                 </tr>
                 </tr>
                 <tr>
                 <tr>
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                   <td colspan="2">&nbsp;</td>
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                   <td colspan="2" class="info-18">Hiromichi Ando arranged <a href="https://2014.igem.org/Team:Tokyo_Tech/Policy_and_Practices#MUSE">MUSE TALK</a> and let us present there.</td>
                 </tr>
                 </tr>
                 <tr>
                 <tr>
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                   <td colspan="2" class="info-18">-
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                   <td colspan="2" class="info-18">Akihiro Hiyoshi, who is the principal of <a href="https://2014.igem.org/Team:Tokyo_Tech/Policy_and_Practices#Visit">Ohyamaguchi Elementary School</a>, gave us a chance to communicate with students.</td>
-
Mr. Kawabata who is working in JA ZENNOH CHIBA advised what problems and benefits  will be occurred if our project was applied.</td>
+
                 </tr>　
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                 </tr>
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                 <tr>
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                   <td colspan="2">&nbsp;</td>
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                   <td colspan="2" class="info-18">&nbsp;</td>
                 </tr>
                 </tr>
                 <tr>
                 <tr>
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                   <td colspan="2" class="info-18">-
+
                   <td colspan="2" class="head">Presentation Adviser</td>
-
Takeda Science Foundation introduced us in their book.</td>
+
                 </tr>
                 </tr>
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                   <td colspan="2" class="info-18">-
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                   <td colspan="2" class="info-18">We would like to thank all the people who came to check our presentations and gave us useful feedbacks:</td>
-
Mr. Sato (a teacher of Shinjuku high school) proposed the experimental classroom, and led us.</td>
+
                 </tr>
                 </tr>
                 <tr>
                 <tr>
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                   <td colspan="2">&nbsp;</td>
+
                   <td colspan="2"><p class="info"><strong>Professor: </strong>Masaaki Wachi, Hiroshi Iwasaki, Masaaki Kotera, Nobuhiro Hayashi, Nobutaka Nakashima, Satoshi Nakamura, Shunichiro Ogura, Hideki Taguchi, Masahiro Takinoue, Toshiaki Fukui, Fumio Arisaka, Yasunori Tanji, Hirokazu Urabe, Hisakazu Mihara, Yasunori Aizawa, Hiroyuki Ohta, Kumiko Sogawa, Masayuki Yamamura,Takao Terano, Robert F. Whitter, Robert Cox</td>
                 </tr>
                 </tr>
                 <tr>
                 <tr>
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                   <td colspan="2" class="info-18">-
+
                   <td colspan="2"><p class="info"><strong>Veteran: </strong>Ryota Fujiwara, Toshiki Hashimoto, Taku Nakayama, Nobuaki Yasuo, Shinya Suzuki, Hiroshi Fujimoto, Sara Ogino, Shunta Suzuki</td>
-
Ms. Inoue (a teacher of Sagamihara high school) and Ms. Miyamoto (a teacher of  Toin Gakuen) collected lots of high school students to our experimental classroom.</td>
+
-
                </tr>
+
-
                <tr>
+
-
                  <td colspan="2" class="info-18">&nbsp;</td>
+
-
                </tr>
+
-
                <tr>
+
-
                  <td colspan="2" class="head">And last but not least</td>
+
-
                </tr>
+
-
                <tr>
+
-
                  <td colspan="2">&nbsp;</td>
+
-
                </tr>
+
-
                <tr>
+
-
                  <td colspan="2" class="info-18">We would like to thank everyone who came to our  progress presentations and gave useful feedback and input:</td>
+
-
                </tr>
+
-
                <tr>
+
-
                  <td colspan="2" class="info">         - <em>Fumio Arisaka, Toshiaki Fukui, Takeshi Hata, Junji  Hirota, Hiroshi Iwasaki, Satoshi Nakamura, Shunichiro Ogura, Hideki Taguchi,  Masahiro Takinoue, Yasunori Tanji, Hirokazu Urabe, Masaaki Wachi, Robert F.  Whittier, Daniel Berrar, Mai Miura, Taku Nakayama, Goshi Sugano, Naoki Tsukuda  and Nobuaki Yasuo</em></td>
+
                 </tr>
                 </tr>
               </table>
               </table>
               <p>&nbsp;</p>
               <p>&nbsp;</p>
-
              </div>
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          </div>
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            </div>
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        </div>
  </div>
  </div>
<!-- end #content -->
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Latest revision as of 01:22, 18 October 2014

Tokyo_Tech

Attribution and Contribution

We could not reach this point without anyone
　
   
Attribution
   

We are proud to say that all the ideas we worked on this year were proposed by undergraduate members of our team Tokyo_Tech 2014. Moreover, the whole experimental data created by our team comes from experiments all carried out by undergraduates. The project "Bank E. coli" was proposed by Naoto Takahashi. Modeling related to this project was done by Takuya Kato and Ye Kai. We want to thank every advisers and instructors who helped us with discussing these ideas and guided us in the experiments.
   
Student team members  
 
All cloning (transformation, culture cells, mini prep):

     - Yuta Kino, Yuya Nakamura, Kohdai Hibi with helping of other team members

 
Parts construction (restriction digest, ligation):

     - Yuta Kino, Yuya Nakamura, Kohdai Hibi

 
AHL-dependent gene expression assay:

    - Shoko Suzuki, Naoto Takahashi, Keina Matsumura
 
Co-culture assay:

    - Yuya Nakamura, Gyomon Ryu
 
Improved rhl promoter assay:

    - Naoto Takahashi, Keina Matsumura, Ayaka Murase

 
Modeling (simulation of the genetic circuit):

     - Takuya Kato, Kai Ye

 
Wiki and slide design:

     - Paniti Achararit, Kai Ye, Riku Shinohara

 
Policy and Practices:

     - Miyabi Hishinuma, Ayaka Murase with helping of other team members

 
Contribution
 
General Support
 
Prof. Kiga let us use his lab for all of our experiments. He also has led many Tokyo Tech teams to the excellent results in iGEM since this competition has started.
Prof. Yamamura and Prof. Konagaya supported us in many ways to give us a better researching environment. 
Prof. Ayukawa supported us in all of our experiments throughout the preparations for iGEM.
Promega KK provided us a part of the restriction enzyme we used without any charge.
 
Instrumental Analysis Support
 
Biomaterial Analysis Center, Technical Department, checked the sequence of the plasmids which we had asked.
 
Policy and Practice Support
 
Tomoya Saito, who is working for National Institute of Public Health, gave us a lecture on dual-use technologies, and gave us useful advice about biosafety.
Hiromichi Ando arranged MUSE TALK and let us present there.
Akihiro Hiyoshi, who is the principal of Ohyamaguchi Elementary School, gave us a chance to communicate with students.
 
Presentation Adviser
 
We would like to thank all the people who came to check our presentations and gave us useful feedbacks:

Professor: Masaaki Wachi, Hiroshi Iwasaki, Masaaki Kotera, Nobuhiro Hayashi, Nobutaka Nakashima, Satoshi Nakamura, Shunichiro Ogura, Hideki Taguchi, Masahiro Takinoue, Toshiaki Fukui, Fumio Arisaka, Yasunori Tanji, Hirokazu Urabe, Hisakazu Mihara, Yasunori Aizawa, Hiroyuki Ohta, Kumiko Sogawa, Masayuki Yamamura,Takao Terano, Robert F. Whitter, Robert Cox

Veteran: Ryota Fujiwara, Toshiki Hashimoto, Taku Nakayama, Nobuaki Yasuo, Shinya Suzuki, Hiroshi Fujimoto, Sara Ogino, Shunta Suzuki

 

 

Retrieved from "http://2014.igem.org/Team:Tokyo_Tech/Attribution_and_Contribution"