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Team:Evry/Biology/GenomeAssembly
From 2014.igem.org
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<h1> De novo Genome assembly</h1> | <h1> De novo Genome assembly</h1> | ||
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| - | < | + | <h4> Assembly Strategy</h4> |
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Our DNA was sequenced by the Genoscope and the quality of the data analysed by the fastqc softvare, provide the link of the data | Our DNA was sequenced by the Genoscope and the quality of the data analysed by the fastqc softvare, provide the link of the data | ||
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for that purpose I chose to to perform my analyse with the velvet software which is known to have good reference | for that purpose I chose to to perform my analyse with the velvet software which is known to have good reference | ||
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| - | < | + | <h4>Proteome Comparisons with FOBEG1<h4> |
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| + | <h4>Antibiotic resistance </h4> | ||
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| - | < | + | <h4>Restriction enzyme</h4> |
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| + | <h4> Nitrate/nitrite</h4> | ||
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| + | <h4>Cadmium</h4> | ||
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| - | < | + | <h4>Copper </h4> |
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| + | <h4>Mercuric</h4> | ||
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| + | <h4>Phenol </h4> | ||
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| + | <div align="center"><img src=https://static.igem.org/mediawiki/2014/9/9e/Phenol4.png></div> | ||
| + | <p>Figure : Anaerobic pathway degradation for phenol | ||
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| - | < | + | <h4>REFERENCE</h4> |
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Revision as of 03:10, 18 October 2014
Biology - Genome Assembly
De novo Genome assembly
Assembly Strategy
Our DNA was sequenced by the Genoscope and the quality of the data analysed by the fastqc softvare, provide the link of the data Our stategy was to used the velvet software whi is a de novo assembler for that purpose I chose to to perform my analyse with the velvet software which is known to have good reference
Proteome Comparisons with FOBEG1
Antibiotic resistance
Restriction enzyme
Nitrate/nitrite
Cadmium
Copper
Mercuric
Phenol
Figure : Anaerobic pathway degradation for phenol
REFERENCE
Antibiotic resistance
Restriction enzyme
Nitrate/nitrite
Cadmium
Copper
Mercuric
Phenol
Figure : Anaerobic pathway degradation for phenol
REFERENCE
