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Team:Colombia/Interlab
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<h4>Transformations and plasmidic DNA extration</h4> | <h4>Transformations and plasmidic DNA extration</h4> | ||
| - | This process was carried out as it is indicated in our [https://2014.igem.org/Team:Colombia/Protocols protocols page] | + | This process was carried out as it is indicated in our [https://2014.igem.org/Team:Colombia/Protocols protocols page]. |
<h4>Fluorescence Microscopy</h4> | <h4>Fluorescence Microscopy</h4> | ||
All the pictures shown here were taken using a [http://www.nikoninstruments.com/Products/Microscope-Systems/Inverted-Microscopes/Eclipse-Ti Nikon® ECLIPSE Ti inverted microscope] equiped with an [http://www.andor.com/scientific-cameras/ixon-emccd-camera-series/ixon-ultra-897 ANDOR iXon Ultra 897] camera. The filter used was FITC. | All the pictures shown here were taken using a [http://www.nikoninstruments.com/Products/Microscope-Systems/Inverted-Microscopes/Eclipse-Ti Nikon® ECLIPSE Ti inverted microscope] equiped with an [http://www.andor.com/scientific-cameras/ixon-emccd-camera-series/ixon-ultra-897 ANDOR iXon Ultra 897] camera. The filter used was FITC. | ||
| + | |||
| + | <h4>Fluorescence Microscopy</h4> | ||
| + | The fluorometric measures were taken using a DGEASGAES. The measures were carried out three times while 10 min with an ON culture diluted in a 1:10 proportion in 2mL of fresh LB, with a previous measuring of OD. | ||
| + | |||
| + | <h4>Image Analysis</h4> | ||
| + | The image analysis were performed with ImageJ 1.46r using Nikon ND Reader and interactive 3D surface plot pluggins. We used the ''Analyzing fluorescence microscopy images with ImageJ'' (Queens University Belfast 2014) as guide. You can download this usefull material here: [[Media:Guide_Fluoresence_ImageJ.pdf]]. | ||
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Revision as of 02:58, 8 July 2014
Interlab Study
This year Colombia Team-iGEM is participating in Interlab Study! We are glad of share our results and measures. You can find them in the tabs below, you can find the specifications of our equipments and the methodology we used as well.
Methods
Text overviewContents |
Methods
Strains and culture
All transformations were carried out in E. coli TOP10. This bacterium was cultured in LB (suplemented with the appropiate antibiotic for each case) at 37 °C.
Transformations and plasmidic DNA extration
This process was carried out as it is indicated in our protocols page.
Fluorescence Microscopy
All the pictures shown here were taken using a [http://www.nikoninstruments.com/Products/Microscope-Systems/Inverted-Microscopes/Eclipse-Ti Nikon® ECLIPSE Ti inverted microscope] equiped with an [http://www.andor.com/scientific-cameras/ixon-emccd-camera-series/ixon-ultra-897 ANDOR iXon Ultra 897] camera. The filter used was FITC.
Fluorescence Microscopy
The fluorometric measures were taken using a DGEASGAES. The measures were carried out three times while 10 min with an ON culture diluted in a 1:10 proportion in 2mL of fresh LB, with a previous measuring of OD.
Image Analysis
The image analysis were performed with ImageJ 1.46r using Nikon ND Reader and interactive 3D surface plot pluggins. We used the Analyzing fluorescence microscopy images with ImageJ (Queens University Belfast 2014) as guide. You can download this usefull material here: Media:Guide_Fluoresence_ImageJ.pdf.
Validation
The following gels show respectively the plasmids with the devices and the restriction profiles for each of the tree devices digested with EcoRI and PstI. For restrictions we obtained two bands (the plasmid and the device) with the expected sizes in all cases.
GELES :)
You can check the size of each device with the next table:
| Name | Backbone + device / bp | Device / bp | Linearized backbone / bp |
| BBa_I20260 | 5344 | 919 | 4425 |
| BBa_J23101 + BBa_E0240(B0032-E0040-B0015) | 2981 | 911 | 2070 |
| BBa_J23115 + BBa_E0240 (B0032-E0040-B0015) | 2981 | 911 | 2070 |
Measures
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Fluorometry
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Measures
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Fluorometry
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Figure 1. Scatter Plot of changes in Cortisol Levels (nmol/L) in Males, depending on the hour of the day.
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Figure 2. Scatter Plot of changes in Cortisol Levels (nmol/L) in Females, depending on the hour of the day.
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Figure 3. Scatter Plot of changes in Cortisol Levels (nmol/L) in the Mean between Males and Females, depending on the hour of the day with shaded area of threshold identified.
Measures
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Fluorometry
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