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| <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/C4HSL-dependent_3OC12HSL_production" style="width:400px; margin-left:-135px;">C4HSL-dependent 3OC12HSL production</a></li> | | <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/C4HSL-dependent_3OC12HSL_production" style="width:400px; margin-left:-135px;">C4HSL-dependent 3OC12HSL production</a></li> |
| <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/3OC12HSL-dependent_C4HSL_production" style="width:400px; margin-left:-135px;">3OC12HSL-dependent C4HSL production</a></li> | | <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/3OC12HSL-dependent_C4HSL_production" style="width:400px; margin-left:-135px;">3OC12HSL-dependent C4HSL production</a></li> |
- | <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/Symbiosis_confirmation_by_co-culture" style="width:400px; margin-left:-135px;">Symbiosis confirmation by co-culture </a></li> | + | <li><a href="https://2014.igem.org/Team:Tokyo_Tech/Experiment/Symbiosis_confirmation_by_co-culture" style="width:400px; margin-left:-135px;">Mutualism Confirmation ~Co-culture Assay~</a></li> |
| | | |
| </ul> | | </ul> |
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| <p align="center"><span class="title-small">Contents</span></p> | | <p align="center"><span class="title-small">Contents</span></p> |
| <p align="left" class="info-24"><a href="#1">1. Introduction </a></p> | | <p align="left" class="info-24"><a href="#1">1. Introduction </a></p> |
- | <p align="left" class="info-24"><a href="#2">2. Summary of the experiments </a></p> | + | <p align="left" class="info-24"><a href="#2">2. Summary of the Experiments </a></p> |
| <p align="left" class="info-18"><a href="#2.1">2.1 C4HSL-dependent CmR expression</a></p> | | <p align="left" class="info-18"><a href="#2.1">2.1 C4HSL-dependent CmR expression</a></p> |
| <p align="left" class="info-18"><a href="#2.2">2.2 C4HSL-dependent 3OC12HSL production </a></p> | | <p align="left" class="info-18"><a href="#2.2">2.2 C4HSL-dependent 3OC12HSL production </a></p> |
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| <p align="left" class="info-18"><a href="#3.1">3.1. C4HSL-Dependent CmR Expression Assay</a></p> | | <p align="left" class="info-18"><a href="#3.1">3.1. C4HSL-Dependent CmR Expression Assay</a></p> |
| <p align="left" class="info-18"><a href="#3.2">3.2. C4HSL-Dependent 3OC12HSL Production Assay</a></p> | | <p align="left" class="info-18"><a href="#3.2">3.2. C4HSL-Dependent 3OC12HSL Production Assay</a></p> |
- | <p align="left" class="info-24"><a href="#4">4. Materials and methods</a></p> | + | <p align="left" class="info-24"><a href="#4">4. Materials and Methods</a></p> |
| <p align="left" class="info-18"><a href="#4.1">4.1. Construction</a></p> | | <p align="left" class="info-18"><a href="#4.1">4.1. Construction</a></p> |
| <p align="left" class="info-18"><a href="#4.2">4.2. Assay Protocol </a></p> | | <p align="left" class="info-18"><a href="#4.2">4.2. Assay Protocol </a></p> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><p class="info-18">We designed signal-dependent signal production in our system by using signaling molecules and antibioticss resistance gene. In our bank story, we used signaling molecules C4HSL as money.</p></td> | + | <td colspan="2"><p class="info-18">We designed signal-dependent signal production in our system by using signaling molecules and antibiotics resistance gene. In our bank story, we used signaling molecule C4HSL as money.</p></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><p class="info-18">For construction of the C4HSL-dependent chloramphenicol resistance (CmR) and 3OC12HSL production module, we constructed a new part Prhl(RL)-CmR-LasI(<a href="http://parts.igem.org/Part:BBa_K1529302">BBa_K1529302</a>). Prhl(RL)-CmR-LasI cell is an engineered <i>E. coli</i> that contains a C4HSL-dependent LasI generator and a constitutive RhlR generator. As a constitutive RhlR generator, we used Ptet-RhlR. In our bank story, this part imitates the functions of Company. (Fig. 3-3-1-1.) We confirmed that C4HSL-depedent growth by measuring optical density, and C4HSL-dependent 3OC12HSL production by using reporter cell. </p> </td> | + | <td colspan="2"><p class="info-18">For construction of the C4HSL-dependent chloramphenicol resistance gene product(CmR) and 3OC12HSL production module, we constructed a new part Prhl(RL)-CmR-LasI(<a href="http://parts.igem.org/Part:BBa_K1529302">BBa_K1529302</a>). Prhl(RL)-CmR-LasI cell is an engineered <i>E. coli</i> that contains a C4HSL-dependent LasI generator and a constitutive RhlR generator. As a constitutive RhlR generator, we used Ptet-RhlR. In our bank story, this part imitates the functions of Company. (Fig. 3-3-1-1) We confirmed the C4HSL-dependent growth by measuring optical density, and C4HSL-dependent 3OC12HSL production by using reporter cell. </p> </td> |
| </tr> | | </tr> |
| | | |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center">Fig. 3-3-1-1 Genetic Circuit of Company <i>E. coli</i></div></td> | + | <td colspan="2"><div align="center"><strong>Fig. 3-3-1-1.</strong> Genetic Circuit of Company <i>E. coli</i></div></td> |
| </tr> | | </tr> |
| + | |
| <tr> | | <tr> |
| <td colspan="2"> </td> | | <td colspan="2"> </td> |
- | </tr>
| |
- | <tr>
| |
- | <td colspan="2"><p class="info-18">In order to confirm Company’s dependency on C4HSL, we measured the growth of Company cell and expression of 3OC12HSL in the presence and absence of C4HSL. </p></td>
| |
| </tr> | | </tr> |
| <tr> | | <tr> |
| <td colspan="2"> </td> | | <td colspan="2"> </td> |
- | </tr>
| |
- | <tr>
| |
- | <td colspan="2"> </td>
| |
- | </tr>
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- | <tr>
| |
- | <td width="445"><div align="center"><a href="https://2014.igem.org/File:Tokyo_Tech_3-3-1-2.png"><img src="https://static.igem.org/mediawiki/2014/thumb/9/9a/Tokyo_Tech_3-3-1-2.png/742px-Tokyo_Tech_3-3-1-2.png" width="300" /></a></div></td>
| |
- | <td width="445"><div align="center"><a href="https://2014.igem.org/File:Tokyo_Tech_3-3-1-3.png"><img src="https://static.igem.org/mediawiki/2014/thumb/4/45/Tokyo_Tech_3-3-1-3.png/800px-Tokyo_Tech_3-3-1-3.png" width="300" /></a></div></td>
| |
| </tr> | | </tr> |
| | | |
- | <tr>
| |
- | <td><div align="center">Fig. 3-3-1-2. C4HSL-depemdent CmR expression Assay Flow Chart</div></td>
| |
- | <td><div align="center">Fig. 3-3-1-3. C4HSL-dependent 3OC12HSL <br />
| |
- | production Assay Flow Chart</div></td>
| |
- | </tr>
| |
| <tr> | | <tr> |
| <td colspan="2" class="entry-long"> <a name="2" id="2"></td> | | <td colspan="2" class="entry-long"> <a name="2" id="2"></td> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><p class="info-18"> We confirmed the function of C4HSL-dependent CmR expression by measuring optical density of the cell cultures containing chloramphenicol. </a></td> | + | <td colspan="2"> </td> |
| + | </tr> |
| + | <tr> |
| + | <td width="445"><div align="center"><a href="https://2014.igem.org/File:Tokyo_Tech_3-3-1-2.png"><img src="https://static.igem.org/mediawiki/2014/9/9a/Tokyo_Tech_3-3-1-2.png" width="500" /></a></div></td> |
| + | </tr> |
| + | <tr> |
| + | <td><div align="center"><strong>Fig. 3-3-2-1.</strong> Flow chart of C4HSL-dependent CmR expression assay</div></td> |
| + | </tr> |
| + | <tr> |
| + | <td colspan="2"> </td> |
| + | </tr> |
| + | <tr> |
| + | <td colspan="2"><p class="info-18"> We confirmed the function of C4HSL-dependent CmR expression by measuring optical density of the cultures containing chloramphenicol(Fig. 3-3-2-1). </a></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><p class="info-18">In this experiment we prepared three plasmids, A, B and C. (See Fig. 3-4-2-1.) Right after the C4HSL induction, we added chloramphenicol into the medium containing Company cell. We measured optical density for about 8 h to estimate the concentration of the cell.</a> | + | <td colspan="2"><p class="info-18">In this experiment we prepared three plasmids, A, B and C. (See Fig. 3-3-2-2) Right after the C4HSL induction, we added chloramphenicol into the medium containing Company cell. We measured the optical density for about eight hours to estimate the concentration of the cell.</a> |
| </p> </td> | | </p> </td> |
| </tr> | | </tr> |
| + | <tr> |
| + | <td colspan="2"> </td> |
| + | </tr> |
| + | <tr> |
| + | <tr><td colspan="2"><div align="center"><a href="https://2014.igem.org/File:Tokyo_Tech_3-3-2-2-1.png"><img src="https://static.igem.org/mediawiki/2014/9/9d/Tokyo_Tech_3-3-2-2-1.png" width="400" /></a></div></td> |
| + | </tr> |
| + | <td><div align="center"><strong>Fig. 3-3-2-2.</strong> Plasmids for the experiment of C4HSL-dependent CmR expression</div></td> |
| + | </tr> |
| + | </tr> |
| + | <tr> |
| + | |
| <tr> | | <tr> |
| <td colspan="2"> </td> | | <td colspan="2"> </td> |
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| <td colspan="2"><h1>2-2. C4HSL-dependent 3OC12HSL production</h1></td> | | <td colspan="2"><h1>2-2. C4HSL-dependent 3OC12HSL production</h1></td> |
| </tr> | | </tr> |
- | <tr>
| + | <tr> |
- | <td colspan="2"><p class="info-18">We performed a reporter assay by using reporter cells to characterize the function of C4HSL-dependent C4HSL production. Prhl(RL)-CmR-LasI cell containing constitutive RhlR generator expresses LasI and produces 3OC12HSL in the presence of C4HSL. Since 3OC12HSL is excreted to the culture, the supernatant of the sender cell contains 3OC12HSL when the part works as expected. </p></td> | + | <td colspan="2"> </td> |
| + | </tr> |
| + | <tr> |
| + | <td colspan="2"><p class="info-18">We performed a reporter assay by using reporter cells to characterize the function of C4HSL-dependent C4HSL production. Prhl(RL)-CmR-LasI cell containing constitutive RhlR generator expresses LasI and produces 3OC12HSL in the presence of C4HSL. Since 3OC12HSL is excreted to the culture, the supernatant of the sender cell contains 3OC12HSL when the part works as expected. </p></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><p class="info-18"> Reporter cells are incubated in the supernatant of the culture of sender cells. When there are 3OC12HSL in the supernatant, reporter cell expresses GFP. We checked the fluorescence of reporter cells to confirm of the expression of 3OC12HSL.The expression of the reporter cells were measured by Flow Cytometer.</p></td> | + | <td colspan="2"><p class="info-18"> Reporter cells are incubated in the supernatant of the culture of sender cells. When there are 3OC12HSL in the supernatant, reporter cell expresses GFP. We checked the fluorescence of reporter cells to confirm the expression of 3OC12HSL. The expression of the reporter cells were measured by flow cytometer.(See Fig.3-3-2-3)</p></td> |
| </tr><tr> | | </tr><tr> |
| <td colspan="2"> </td> | | <td colspan="2"> </td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><p class="info-18">We prepared the following conditions for the induction of reporter cells. (Plux-CmR cell was used as the negative control.)</p></td> | + | <td width="445"><div align="center"><a href="https://2014.igem.org/File:Tokyo_Tech_3-3-1-3.png"><img src="https://static.igem.org/mediawiki/2014/4/45/Tokyo_Tech_3-3-1-3.png" width="500" /></a></div></td> |
| + | </tr> |
| + | <tr> |
| + | <td><div align="center"><strong>Fig. 3-3-2-3. </strong>Flow chart of C4HSL-dependent 3OC12HSL production Assay </div></td> |
| + | </tr> |
| + | |
| + | <tr><td colspan="2"><div align="center"><a href="https://2014.igem.org/File:Tokyo_Tech_3-3-2-2.png"><img src="https://static.igem.org/mediawiki/2014/2/2f/Tokyo_Tech_3-3-2-2.png" width="700" /></a></div></td> |
| + | </tr> |
| + | <td><div align="center"><strong>Fig. 3-3-2-4.</strong>Plasmids for the experiment of C4HSL-dependent 3OC12HSL production</div></td> |
| + | </tr> |
| + | |
| + | <td colspan="2"><p class="info-18">We prepared the following conditions for the induction of reporter cells. (Plux-CmR cell was used as the negative control. See Fig. 3-3-2-4)</p></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><p class="info-18">(5) 5 microM of artificial C4HSL in LB medium </p></td> | + | <td colspan="2"><p class="info-18">(5) 5 microM of synthetic C4HSL in LB medium </p></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><p class="info-18">We tested two type of culture condition which contains different concentration of chloramphenicol(Cm). (0 and 100 microg / mL)</p></td> | + | <td colspan="2"><p class="info-18">We tested two types of culture condition which contains different concentration of chloramphenicol(Cm). (0 and 100 microg / mL)</p></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><p class="info-18">Fig.3-3-3-1. Fig.3-3-3-2. shows the condition in the absence and presence of chloramphenicol, respectively. </p></td> | + | <td colspan="2"><p class="info-18">Fig.3-3-3-1, Fig.3-3-3-2 shows the condition in the absence and presence of chloramphenicol, respectively. </p></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center">Fig. 3-3-3-1. C4HSL-Dependent Company Growth in no Cm</div></td> | + | <td colspan="2"><div align="center"><strong>Fig. 3-3-3-1.</strong> C4HSL-Dependent Company growth with no Cm addition</div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center">Fig. 3-3-3-2. C4HSL-Dependent Company Growth in 100 microg/mL Cm</div></td> | + | <td colspan="2"><div align="center"><strong>Fig. 3-3-3-2.</strong> C4HSL-Dependent Company Growth in 100 microg/mL Cm</div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><h1>3-2. C4HSL-dependent 3OC12HSL production Assay</h1></td> | + | <td colspan="2"><h1>3-2. C4HSL-dependent 3OC12HSL Production Assay</h1></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><p class="info-18">Fig. 3-3-3-3. shows the fluorescence intensities generated by reporter cells. When the reporter cell E was incubated in the condition (1) (the culture of the induced Company cell), the fluorescence intensity of the reporter cell increased. Comparing the results of condition (1) and (2) reporter cell in the supernatant of (1) had 29-fold higher fluorescence intensity. </p></td> | + | <td colspan="2"><p class="info-18">Fig. 3-3-3-3 shows the fluorescence intensities generated by the reporter cells. When the reporter cell E was incubated in the condition (1) (the culture of the induced Company cell), the fluorescence intensity of the reporter cell increased. Comparing the results of condition (1) and (2) reporter cell in the supernatant of (1) had 29-fold higher fluorescence intensity. </p></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center"><a href="#"><img src="" width="500" /></a></div></td> | + | <td colspan="2"><div align="center"><a href="https://2014.igem.org/File:Customer excretes 3OC12HSL when C4HSL exists.png"><img src="https://static.igem.org/mediawiki/2014/0/07/Customer_excretes_3OC12HSL_when_C4HSL_exists.png" width="500" /></a></div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center">Fig. 3-3-3-3. Customer excretes 3OC12HSL when C4HSL exists</div></td> | + | <td colspan="2"><div align="center"><strong>Fig. 3-3-3-3.</strong> Company excretes 3OC12HSL when C4HSL exists</div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18"><div align="left">A. Ptet-GFP-Ptet-RhlR (psB6A1), Prhl(RL)-CmR-LasI(pSB3K3)</div></td> | + | <td colspan="2" class="info-18"><div align="left">A. Ptet-GFP-Ptet-RhlR (pSB6A1), Prhl(RL)-CmR-LasI(pSB3K3)</div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center">Fig. 3-3-4-1.</div></td> | + | <td colspan="2"><div align="center"><strong>Fig. 3-3-4-1.</strong></div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">B. Ptet-GFP-Ptet-RhlR (psB6A1), PlacIq-CmR (pSB3K3)…Positive control</td> | + | <td colspan="2" class="info-18">B. Ptet-GFP-Ptet-RhlR (pSB6A1), PlacIq-CmR (pSB3K3)…Positive control</td> |
- | </tr> | + | </tr |
| <tr> | | <tr> |
| <td colspan="2"> </td> | | <td colspan="2"> </td> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center">Fig. 3-3-4-2.</div></td> | + | <td colspan="2"><div align="center"><strong>Fig. 3-3-4-2.</strong></div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center">Fig. 3-3-4-3.</div></td> | + | <td colspan="2"><div align="center"><strong>Fig. 3-3-4-3.</strong></div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center">Fig. 3-3-4-4.</div></td> | + | <td colspan="2"><div align="center"><strong>Fig. 3-3-4-4.</strong></div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center">Fig. 3-3-4-5.</div></td> | + | <td colspan="2"><div align="center"><strong>Fig. 3-3-4-5.</strong></div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center">Fig. 3-3-4-6図が違う.</div></td> | + | <td colspan="2"><div align="center"><strong>Fig. 3-3-4-6.</strong></div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">F. Ptet-LuxR (pSB6A1), PlacIq-GFP (pSB3K3) (Positive control)</td> | + | <td colspan="2" class="info-18">F. Ptet-LuxR (pSB6A1), PlacIq-GFP (pSB3K3)...Positive control</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center">Fig. 3-3-4-7.</div></td> | + | <td colspan="2"><div align="center"><strong>Fig. 3-3-4-7.</strong></div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">G. Ptet-LuxR (pSB6A1), Promoter-less-GFP (pSB3K3) (Negative control)</td> | + | <td colspan="2" class="info-18">G. Ptet-LuxR (pSB6A1), Promoter-less-GFP (pSB3K3)...Negative control</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2"><div align="center">Fig. 3-3-4-8.</div></td> | + | <td colspan="2"><div align="center"><strong>Fig. 3-3-4-8.</strong></div></td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| | | |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">1. Grow the colony of sender cell in LB containing antibiotic O/N at 37°C.</td> | + | <td colspan="2" class="info-18">1. Prepare overnight cultures for the sender cells in 3 mL LB medium, containing ampicillin (50 microg / mL) and kanamycin (30 microg / mL) at 37°C for 12h.</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
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| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18"> 1) 3 mL of LB containing Amp and Kan + 3 microL C4HSL (5 microM)</td> | + | <td colspan="2" class="info-18"> 1) 3 mL of LB containing Amp and Kan + 30 microL C4HSL (final concentration is 5 microM)</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18"> 2) 3 mL of LB containing Amp and Kan + 3 microL DMSO</td> | + | <td colspan="2" class="info-18"> 2) 3 mL of LB containing Amp and Kan + 30 microL DMSO</td> |
| </tr> | | </tr> |
| | | |
| <tr> | | <tr> |
| <td colspan="2" class="info-18"> 3) 3 mL of LB containing Amp, Kan and Cm (final concentration is 100 microg/mL) <br /> | | <td colspan="2" class="info-18"> 3) 3 mL of LB containing Amp, Kan and Cm (final concentration is 100 microg/mL) <br /> |
- | + 30 microL C4HSL (500 microM)</td> | + | + 30 microL C4HSL (final concentration is 500 microM)</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18"> 4) 3 mL of LB containing Amp, Kan and Cm (final concentration is 100 microg/mL) + 30 microL DMSO</td> | + | <td colspan="2" class="info-18"> 4) 3 mL of LB containing Amp, Kan and Cm (final concentration of Cm is 100 microg/mL) + 30 microL DMSO</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
Line 491: |
Line 514: |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">5. Measure optical density every hour. (If optical density is over 1.0, dilute the cell medium to 1/10.)</td> | + | <td colspan="2" class="info-18">5. Measure optical density every hour. (If the optical density is over 1.0, dilute the cell medium to 1/10.)</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
Line 504: |
Line 527: |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">1. Grow the colony of sender cell in LB containing antibiotic O/N at 37°C.</td> | + | <td colspan="2" class="info-18">1. Prepare overnight cultures for the sender cells in 3 mL LB medium, containing ampicillin (50 microg / mL) and kanamycin (30 microg / mL) at 37°C for 12h. </td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">2. Make a 1:100 dilution in 3 mL of fresh LB containing antibiotic and grow the cells at 37°C until the observed OD590 reaches 0.5.If the OD becomes over 0.5, dilute to o.5 with LB medium.</td> | + | <td colspan="2" class="info-18">2. Make a 1:100 dilution in 3 mL of fresh LB containing antibiotic and grow the cells at 37°C until the observed OD590 reaches 0.5.</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
Line 513: |
Line 536: |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18"> a) Add 15 microL of 10 microM C4HSL to 3 mL LB containing Amp and Kan</td> | + | <td colspan="2" class="info-18"> a) Add 15 microL of 10 mM C4HSL to 3 mL LB containing Amp and Kan (final concentration is 50 microM)</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
Line 522: |
Line 545: |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">5. Measure optical density every hour. (If optical density is over 1.0, dilute the cell medium to 1/10.)</td> | + | <td colspan="2" class="info-18">5. Measure the optical density every hour. (If the optical density is over 1.0, dilute the cell medium to 1/10.)</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">6. Centrifuge sample at 9000x g, 4°C for 1minute.Filter sterilize supernatant. (Pore size is 0.22 microm.)</td> | + | <td colspan="2" class="info-18">6. Centrifuge the sample at 9000x g, 4°C for 1 min. Filter sterilize the supernatant. (Pore size is 0.22 microm.)</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
Line 537: |
Line 560: |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">1. Grow the colony of Reporter cell (E~G) in LB containing antibiotic(Amp and Kan) over night at 37°C.</td> | + | <td colspan="2" class="info-18">1. Prepare overnight cultures for the Reporter cell (E~G) in 3 mL LB medium, containing ampicillin (50 microg / mL) and kanamycin (30 microg / mL) at 37°C for 12h.</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">2. Make a 1:100 dilution in 3 mL of fresh LB+ antibiotic and grow the cells at 37°C until you reach an 0.5 in OD590 (fresh culture).</td> | + | <td colspan="2" class="info-18">2. Make a 1:100 dilution in 3 mL of fresh LB + antibiotic and grow the cells at 37°C until you reach an 0.5 in OD590 (fresh culture).</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
Line 546: |
Line 569: |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18"> 1)2.7 mL filtrate of Aa +300 microL LB </td> | + | <td colspan="2" class="info-18"> 1) 2.7 mL filtrate of Aa +300 microL LB </td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18"> 2)2.7 mL filtrate of Ab +300 microL LB</td> | + | <td colspan="2" class="info-18"> 2) 2.7 mL filtrate of Ab +300 microL LB</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
Line 558: |
Line 581: |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18"> 5)3 mL LB + 500 microM C12HSL 30 microL (final concentration is 5 microM)</td> | + | <td colspan="2" class="info-18"> 5) 3 mL LB + 5 microM C12HSL 3 microL (Final concentration is 5 nM)</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18"> 6)3 mL LB + DMSO 30 microL </td> | + | <td colspan="2" class="info-18"> 6) 3 mL LB + DMSO 3 microL </td> |
| </tr> | | </tr> |
| | | |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">4. Grow the samples of Reporter cell in incubator at 37°C for 4 hours.</td> | + | <td colspan="2" class="info-18">4. Grow the samples of Reporter cell in incubator at 37°C for 4 h.</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">5. Start preparing the flow cytometer 1 h before the end of incubation.</td> | + | <td colspan="2" class="info-18">5. Start preparing the flow cytometer 1 h before the end of incubation.</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">6. After incubation, take the sample, and centrifuge at 9000x g, 1 min, 4°C.</td> | + | <td colspan="2" class="info-18">6. After the incubation, take the sample, and centrifuge at 9000x g, 1 min., 4°C.</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">7. Remove the supernatant by using P1000 pipette.</td> | + | <td colspan="2" class="info-18">7. Remove the supernatant by using P1000 pipette.</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |
- | <td colspan="2" class="info-18">8. Add 1 mL of filtered PBS (phosphate-buffered saline) and suspend. (The ideal of OD is 0.3.)</td> | + | <td colspan="2" class="info-18">8. Add 1 mL of filtered PBS (phosphate-buffered saline) and suspend. (The ideal of OD is 0.3.)</td> |
| </tr> | | </tr> |
| <tr> | | <tr> |