Team:Waterloo

From 2014.igem.org

(Difference between revisions)
 
(84 intermediate revisions not shown)
Line 1: Line 1:
-
{{CSS/Main}}
+
{{Team:Waterloo/CSS/baseWiki}}
-
 
+
{{Team:Waterloo/CSS/WaterlooTeam}}
 +
{{Team:Waterloo/TopBar}}
<html>
<html>
 +
<title>Waterloo iGem 2014 Team</title>
 +
<meta charset="UTF-8">
 +
<style>
 +
#contentSub, #footer-box, #catlinks, #search-controls, #p-logo, .printfooter, .firstHeading,.visualClear {display: none;} /*-- hides default wiki settings --*/
 +
</style>
 +
<div style="position: relative; top: -30px; margin: 0px -5px;">
 +
<div class="blueOnGrey">
 +
<h1>Staphylocide</h1>
 +
<h3 style="text-align: center">Delivery of an Antibiotic Resistance Gene Silencing Mechanism to a MRSA Population using Bacterial Conjugation</h3>
 +
</div>
 +
<!--Content below images-->
 +
<div class="content" style="margin-top: 0px;">
 +
<div class="tabcontents">
 +
                        <div class="anchor" id="view0" style="padding-top:0px;">
 +
<div style="padding-bottom:50px; min-height: 200px; margin-bottom: 40px;">
 +
<div  class="half-column floatLeft">
 +
  <h2 class="centerUpper blueOnGrey">Problem</h2>
 +
  <img class="smallIcon floatRight" src="https://static.igem.org/mediawiki/2014/c/cc/Waterloo_mrsa_face.png" />
 +
  <p>MRSA is sweeping the nation, an antibiotic-resistant scourge migrating from hospitals into communities. We need a hero to fight it and Waterloo iGEM has designed a synthetic bacterium that just might do the trick...</p>
 +
</div>
 +
<div class="half-column floatRight">
 +
  <h2 class="centerUpper blueOnGrey">Solution</h2>
 +
  <img class="smallIcon floatRight" src="https://static.igem.org/mediawiki/2014/9/94/Waterloo_staphylocide_face.png" />
 +
  <p>...Staphylocide! Staphylocide delivers antibiotic resistance gene silencing <em>in vivo</em> and could one day be incorporated into a treatment that would help doctors defeat MRSA once and for all.</p>
 +
</div>
 +
</div>
 +
<p>&nbsp;</p>
 +
<!-- here go the centered images -->
 +
<h2 class="centerUpper blueOnGrey" style="margin-left: 2%; margin-right: 2%; margin-top: 80;"">Project Cornerstones</h2>
 +
<div style="padding:20px 20px; text-align:center; width:100%; margin: auto;" >
 +
<a href="https://2014.igem.org/Team:Waterloo/Deliver"><img src="https://static.igem.org/mediawiki/2014/9/98/Waterloo_deliver_icon.png" class="icon" /></a>
 +
<a href="https://2014.igem.org/Team:Waterloo/Silence"><img src="https://static.igem.org/mediawiki/2014/9/9e/Waterloo_silence_icon.png" class="icon" /></a>
 +
<a href="https://2014.igem.org/Team:Waterloo/Translate"><img src="https://static.igem.org/mediawiki/2014/7/7e/Waterloo_translate_icon.png" class="icon" /></a>
 +
</div>
 +
<div style="text-align: center; width: 90%; margin: auto;"><p>Explore the three cornerstones of this year's project: <a href="https://2014.igem.org/Team:Waterloo/Deliver">delivering</a> the silencing <em>in vivo</em> using conjugation, <a href="https://2014.igem.org/Team:Waterloo/Silence">silencing</a> <em>mecA</em> expression using CRISPRi and sRNA and <a href="https://2014.igem.org/Team:Waterloo/Translate">translating</a> from the lab to the patients.</p></div>
 +
</div></div></div></div>
-
<!--main content -->
 
-
<table width="70%" align="center">
 
-
 
-
 
-
<!--welcome box -->
 
-
<tr>
 
-
<td style="border:1px solid black;" colspan="3" align="center" height="150px" bgColor=#FF404B>
 
-
<h1 >WELCOME TO iGEM 2014! </h1>
 
-
2014 Project Description:
 
-
Waterloo’s 2014 iGEM project aims to remove antibiotic resistance in MRSA populations by using CRISPR and RNA interference systems that target mecA expression. The gene mecA in MRSA is responsible for it’s resistance against beta-lactam antibiotics. CRISPRi and RNAi systems can be incorporated onto a Staphylococcus conjugative plasmid, which would be able to replicate and transfer within a MRSA population, effectively disabling the antibiotic resistant phenotype in the population over time. A beta-lactam antibiotic can then be administered to kill the newly antibiotic-sensitive bacteria.
 
-
To execute this idea, the project was divided into three milestones. The first milestone aims to model the ability of CRISPRi and RNAi to inhibit gene expression in the level one organism, Staphylococcus epidermidis. The second milestone aims to develop an effective conjugative plasmid in Staphylococcus to ensure a proper delivery mechanism for CRISPRi and/or RNAi. Measuring the effectiveness of the conjugative plasmid will allow us to apply our current mathematical models to determine the optimal time periods to apply the antibiotics to the population after the addition of the donor cells. The third milestone would be to evaluate and improve this system for MRSA populations.
 
-
 
-
<p>Your team has been approved and you are ready to start the iGEM season!
 
-
<br>On this page you can document your project, introduce your team members, document your progress <br> and share your iGEM experience with the rest of the world! </p>
 
-
<br>
 
-
<p style="color:#E7E7E7"> <a href="https://2014.igem.org/wiki/index.php?title=Team:Waterloo&action=edit"style="color:#FFFFFF"> Click here  to edit this page!</a> </p>
 
-
</td>
 
-
</tr>
 
-
 
-
<tr> <td colspan="3"  height="5px"> </td></tr>
 
-
<!-- end welcome box -->
 
-
<tr>
 
-
 
-
<!--navigation menu -->
 
-
<td align="center" colspan="3">
 
-
 
-
<table  width="100%">
 
-
<tr heigth="15px"></tr>
 
-
<tr heigth="75px">
 
-
 
-
 
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7> 
 
-
<a href="https://2014.igem.org/Team:Waterloo"style="color:#000000">Home </a> </td>
 
-
 
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
 
-
<a href="https://2014.igem.org/Team:Waterloo/Team"style="color:#000000"> Team </a> </td>
 
-
 
-
<td style="border:1px solid black;" align="center"  height ="45px"  onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
 
-
<a href="https://igem.org/Team.cgi?year=2014&team_name=Waterloo"style="color:#000000"> Official Team Profile </a></td>
 
-
 
-
<td style="border:1px solid black" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7> 
 
-
<a href="https://2014.igem.org/Team:Waterloo/Project"style="color:#000000"> Project</a></td>
 
-
 
-
<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
 
-
<a href="https://2014.igem.org/Team:Waterloo/Parts"style="color:#000000"> Parts</a></td>
 
-
 
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
 
-
<a href="https://2014.igem.org/Team:Waterloo/Modeling"style="color:#000000"> Modeling</a></td>
 
-
 
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7> 
 
-
<a href="https://2014.igem.org/Team:Waterloo/Notebook"style="color:#000000"> Notebook</a></td>
 
-
 
-
<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
 
-
<a href="https://2014.igem.org/Team:Waterloo/Safety"style=" color:#000000"> Safety </a></td>
 
-
 
-
<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
 
-
<a href="https://2014.igem.org/Team:Waterloo/Attributions"style="color:#000000"> Attributions </a></td>
 
-
 
-
 
-
<td align ="center"> <a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="55px"></a> </td>
 
-
</tr>
 
-
</table>
 
-
 
-
<!--end navigation menu -->
 
-
</tr>
 
-
 
-
 
-
</tr>
 
-
 
-
 
-
 
-
 
-
 
-
</td>
 
-
 
-
<tr> <td colspan="3"  height="15px"> </td></tr>
 
-
<tr><td bgColor="#e7e7e7" colspan="3" height="1px"> </tr>
 
-
<tr> <td colspan="3"  height="5px"> </td></tr>
 
-
 
-
 
-
<!--requirements section -->
 
-
<tr><td colspan="3"> <h3> Requirements </h3></td></tr>
 
-
<tr>
 
-
<td width="45%"  valign="top">
 
-
 
-
<p> Please be sure to keep these links, your audience will want to find your: </p>
 
-
 
-
<!-- Links to other team pages -->
 
-
<ul>
 
-
<li><a href="https://2014.igem.org/Team:Waterloo">Home</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Waterloo/Team">Team</a> </li>
 
-
<li><a href="https://igem.org/Team.cgi?year=2013&team_name=Waterloo">Official Team Profile</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Waterloo/Project">Project</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Waterloo/Parts">Parts</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Waterloo/Modeling">Modeling</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Waterloo/Notebook">Notebook</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Waterloo/Safety">Safety</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Waterloo/Attributions">Attributions</a> </li>
 
-
 
-
</ul>
 
-
 
-
</td>
 
-
 
-
<td > </td>
 
-
<td width="45%">
 
-
 
-
<p>There are a few wiki requirements teams must follow:</p>
 
-
<ul>
 
-
<li>All pages, images and files must be hosted on the <a href ="https://2014.igem.org/Special:Upload">  2014.igem.org server</a>. </li>
 
-
<li>All pages must be created under the team’s name space.</li>
 
-
<li>As part of your documentation, keep the links from the menu to the left. </li>
 
-
<li>Do not use flash in wiki code. </li>
 
-
<li>The <a href="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png"> iGEM logo </a> should be placed on the upper part of every page and should link to <a href="https://2014.igem.org/Main_Page">2014.igem.org</a>.</li>
 
-
</ul>
 
-
<p>Visit the <a href="https://2014.igem.org/Wiki_How-To"> Wiki How To page </a> for a complete list of requirements, tips and other useful information. </p>
 
-
 
-
</td>
 
-
</tr>
 
-
 
-
 
-
<tr> <td colspan="3"  height="15px"> </td></tr>
 
-
<tr><td bgColor="#e7e7e7" colspan="3" height="1"> </tr>
 
-
 
-
 
-
<!--tips  -->
 
-
<tr><td colspan="3" > <h3> Tips  </h3></td></tr>
 
-
 
-
<tr>
 
-
<td width="45%" valign="top">
 
-
<p>We are currently working on providing teams with some easy to use design templates.
 
-
<br> In the meantime you can also view other team wikis for inspiration! Here are some very good examples</p>
 
-
<ul>
 
-
<li> <a href="https://2013.igem.org/Team:SDU-Denmark/"> 2013 SDU Denmark </a> </li>
 
-
<li> <a href="https://2013.igem.org/Team:SYSU-China">2013 SYSU China</a> </li>
 
-
<li> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_ATCG"> 2013 Shenxhen BGIG ATCG </a></li>
 
-
<li> <a href="https://2013.igem.org/Team:Colombia_Uniandes">2013 Colombia Unianades </a></li>
 
-
<li> <a href="https://2013.igem.org/Team:Lethbridge">2013 Lethbridge</a></li>
 
-
</ul>
 
-
<p>For a full wiki list, you can visit <a href="https://igem.org/Team_Wikis?year=2013">iGEM 2013 web sites </a> and <a href="https://igem.org/Team_Wikis?year=2012">iGEM 2012 web sites</a>  lists. </p>
+
-
</td>
+
 +
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.1/jquery.min.js"></script>
 +
<script type="text/javascript">
-
<td> </td>
+
//Align headings
-
<td width="45%">  
+
function alignHeadings(){
 +
  var remainingWidth = $("div#topbar").width();
 +
    var allheadings = $("ul#headings >li");
 +
    allheadings.css("display", "block");
 +
    $("ul#shortheadings >li").css("display", "none");
 +
    allheadings.width(remainingWidth / (allheadings.length + 0.5))
 +
      .css({"text-align":"center","line-height":"150%"});
 +
}
-
<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
+
$(document).ready(alignHeadings);
 +
$(window).resize(alignHeadings);
 +
</script>
-
<ul>
+
</html>
-
<li>State your accomplishments! Tell people what you have achieved from the start. </li>
+
{{Template:Team:Waterloo/Footbar}}
-
<li>Be clear about what you are doing and what you plan to do.</li>
+
{{Template:Team:Waterloo/JS/WaterlooTeam}}
-
<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
+
{{Template:Team:Waterloo/JS/baseWiki}}
-
<li>Make sure information is easy to find; nothing should be more than 3 clicks away.  </li>
+
-
<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
+
-
<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="">iGEM 2013 calendar</a> </li>
+
-
<li>Have lots of fun! </li>
+
-
</ul>
+
-
</br>
+
-
</td>
+
-
</tr>
+
-
</table>
+

Latest revision as of 02:33, 18 October 2014

Waterloo iGem 2014 Team

Staphylocide

Delivery of an Antibiotic Resistance Gene Silencing Mechanism to a MRSA Population using Bacterial Conjugation

Problem

MRSA is sweeping the nation, an antibiotic-resistant scourge migrating from hospitals into communities. We need a hero to fight it and Waterloo iGEM has designed a synthetic bacterium that just might do the trick...

Solution

...Staphylocide! Staphylocide delivers antibiotic resistance gene silencing in vivo and could one day be incorporated into a treatment that would help doctors defeat MRSA once and for all.

 

Project Cornerstones

Explore the three cornerstones of this year's project: delivering the silencing in vivo using conjugation, silencing mecA expression using CRISPRi and sRNA and translating from the lab to the patients.