Team:BostonU/Acknowledgements

From 2014.igem.org

Revision as of 00:12, 1 October 2014

• TEAM
• PROJECT
  • Overview
  • Priority Encoder
  • MoClo Assembly Method
  • Low Copy Backbones
  • Tandem Promoters
  • Fusion Proteins
  • Repressor Proteins
  • Multiplexing
  • BioDesign Automation Tools
  • Future Work
• ACHIEVEMENTS
  • Data Collected
  • Parts Submitted
  • Chimera Workflow
  • Chimera Example
  • Medal Fulfillment
• NOTEBOOK
  • Training
  • Protocols
  • Backbones
  • Tandem Promoters and Repressors
  • Fusion Proteins
• CONSIDERATIONS
  • Collaborations
  • Measurement Track
  • Safety
  • Interlab Study
  • NEGEM
  • Policy and Practices
• ACKNOWLEDGEMENTS

Acknowledgements

CIDAR Lab
	Professor Douglas Densmore Primary Investigator, CIDAR Lab We would like to thank Professor Densmore for his lab space and his support throughout the summer.
	Dr. Ernst Oberortner Postdoctoral Researcher, CIDAR Lab We would also like to thank Dr. Ernst Oberortner for his help with Eugene.
Corporate Collaborations
	Jacob Beal BBN Technologies We would like to thank Dr. Jacob Beal from BBN Technologies for teaching us how to use the BBN Synthetic Biology Tools.
Contributions
The wetlab work was completed by Yash Agarwal (fusion proteins), Alan Pacheco (new vector backbones), and Katie Lewis (tandem promoters). Alan also designed our wiki page. Our advisor, Traci Haddock, and our mentor, Evan Appleton, trained us in the lab and provided us troubleshooting advice throughout the project. Ariela Esmuria did the wetlab work for the Interlab Study.
Sponsors
We'd like to thank all of our sponsors for their generous support. Without the support from the following Boston University departments and corporate sponsors, we would not have been able to compete in iGEM. Thank you very much!
As synthetic biology continues to expand, researchers are producing a greater variety of novel and innovative genetic circuits. This research revolves around a standard design-build-test cycle that defines the timeline of a project from its conception. The design and assembly of constructs depends on a thorough understanding of their individual components, making thorough part characterization data essential. The fact that there is currently little standardization in DBT workflows and poorly documented standard parts libraries represents an increasingly significant stymying factor to the growth of the field, especially as more laboratories continue to share resources and data. We seek to strengthen the traditional design-build-test cycle fundamental to synthetic biology with a formalized workflow defined by bio-design automation software tools and built upon a thoroughly characterized library of parts.
Motivation and Background We will complete a library of basic parts currently composed of existing ribosomal binding sites and terminators from the CIDAR Lab by adding a series of tandem promoters, fusion proteins, and vector backbones. These parts will will then be cloned using the MoClo assembly method in multiplexing reactions to create a library of transcriptional units. Data will be gathered for these TUs using flow cytometry in conjunction with the TASBE Tools developed at BBN Technologies to characterize all the parts in our library. The TASBE Tools allow for calibrated measurement of gene expression in absolute units of fluorescence, and will allow for effectively designing multi-TU genetic circuits. We hypothesize that guiding the design and construction of complex circuits with our characterization data and workflow will streamline the traditional design-build-test cycle and aid in a more efficient process for the assembly of novel devices. As a measurement team, we will also use our flow cytometer and the TASBE Tools to enhance the documentation of existing Registry parts. We will contribute our entire basic parts and TU libraries to the Registry to enable other synthetic biology groups to rely on well-characterized parts and methods for their research.

Our Sponsors