[1] Slusarczyk, A. L., A., Weiss, R., Foundations for the design and implementation of synthetic genetic circuits, Nature Reviews Genetics, 13, 2012

[2] Ausländer, D. et al., A Synthetic Multifunctional Mammalian pH Sensor and CO₂ Transgene-Control Device, Molecular Cell, 55, 2014

[3] Bugaj, L. J., Schaffer, D. V., Bringing next-generation therapeutics to the clinic through synthetic biology, Current Opinion in Chemical Biology, 16, 2012

[4] Eberhard, A. et al., Structural identification of autoinducer of Photobacterium fischeri luciferase, Biochemistry, 20, 1981

[5] Williams, P. et al., Look who's talking: communication and quorum sensing in the bacterial world, Philosophical Transactions of the Royal Society B: Biological Sciences, 362.1483, 2007

[6] Jayaraman, A., Wood, T. K. Bacterial quorum sensing: signals, circuits, and implications for biofilms and disease, Annual Review of Biomedical Engineering, 10, 2008

[7] Benenson, Y., Recombinatorial Logic, Science, 340, 2013

[8] Siuti, P. et al., Synthetic circuits integrating logic and memory in living cells, Nature Biotechnology, 31.5, 2013

[9] Bonnet, J. et al., Amplifying genetic logic gates, Science, 340.6132, 2013

[10] Collins, J. et al., Engineered riboregulators enable post-transcriptional control of gene expression, Nature Biotechnology, 22, 2004

[11] Stephen, W., A new kind of science, Vol. 5, Champaign: Wolfram media, 2002

[12]Luisi, P. L., The emergence of life: from chemical origins to synthetic biology, Chapter 6. Cambridge University Press, 2006

[13]Salis, H. M., Mirsky, E. A., Voigt, C. A., Automated design of synthetic ribosome binding sites to control protein expression, Nature Biotechnology, 27, 2009

[14]Brown, W. R. A. et al., Serine recombinases as tools for genome engineering, Methods 53.4: 372-379, 2011

[15]Bolivar, F. et al., Construction and characterization of new cloning vehicles. II. A multipurpose cloning system, Gene 2.2: 95-113, 1977

[16]Lennen, R. M. et al., A Process for Microbial Hydrocarbon Synthesis: Overproduction of Fatty Acids in Escherichia coli and Catalytic Conversion to Alkanes Biotechnology and Bioengineering 106.2: 193-202, 2010

[17] Maurizi M. R., Proteases and protein degradation in Escherichia coli, Experientia. 1992 Feb 15 48(2):178-201. p.181 table 2

[18] Callura, J. M., Cantor, C. R., Collins, J. J., Genetic switchboard for synthetic biology applications, PNAS, 2012

[19] Weber M., Buceta J., Dynamics of the quorum sensing switch: stochastic and non-stationary effects, BMC Systems Biology, 2013

[20] Basu S., Gerchman Y., Collins C.H., Arnold F.H., Weiss R., A synthetic multicellular system for programmed pattern formation, Nature, 2005

[21] Team MIT 2010

[22] Liang S. T., Ehrenberg M., Dennis P., Bremer H.,Decay of rplN and lacZ mRNA in Escherichia coli, Journal of molecular biology, 1999

[23] Haynes, W. M., ed. CRC handbook of chemistry and physics, CRC press, 2012

[24] Draget, K. I., Smidsrød, O., Skjåk-Bræk, G., Alginates from Algae, Biopolymers Online, 6, 2005

[25] Smidsrød, O., Skjåk-Bræk, G., Alginate as immobilization matrix for cells, Trends in Biotechnology, 8, 1990

[26] O., Egea, J.A et. al, "MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics ", BMC Bioinformatics, 15:136, 2014

[27] Stewart, Philip S. "Diffusion in biofilms." Journal of bacteriology 185.5 : 1485-1491, 2003

[28] Kaplan, HEIDI B., and E. P. Greenberg. "Diffusion of autoinducer is involved in regulation of the Vibrio fischeri luminescence system." Journal of Bacteriology 163.3 : 1210-1214, 1985

[29] Lars Müller, "Growing of encapsulated Escherichia coli in picolitre sized calcium alginate beads", Master Thesis, Supervisor: Dr. Rene Pellaux, Bioprocess Laboratory ETH Zürich, 2008

[30] Hannoun, Betty JM, and Gregory Stephanopoulos. "Diffusion coefficients of glucose and ethanol in cell‐free and cell‐occupied calcium alginate membranes." Biotechnology and bioengineering 28.6 : 829-835, 1986

[31] Kitson, P.J., Rosnes, M. H., Sans, V., Dragone, V., Cronin, L., Configurable 3D-Printed millifluidic and microfluidic ‘lab on a chip’ reactionware devices, Lab on a Chip, 12, 2012

[32] Isaacs, F. J., Dwyer, D. J., Ding, C, Pervouchine, D. D., Cantor, C. R., Collins, J. J., Engineered riboregulators enable post-transcriptional control of gene expression, Nature Biotechnology, 22, 2004

[33] Panke, S., Meyer, S., Huber, C. M., Witholt, B., Wubbolts, M.G., An alkane-responsive expression system for the production of fine chemicals, Applied and environmental microbiology, 65,1999