Team:HZAU-China/Modeling

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Modeling

References

Bennett, M. R., Volfson, D., Tsimring, L., & Hasty, J. (2007). Transient dynamics of genetic regulatory networks. Biophysical journal, 92(10), 3501-3512.

Ringrose, L., Lounnas, V., Ehrlich, L., Buchholz, F., Wade, R., & Stewart, A. F. (1998). Comparative kinetic analysis of FLP and cre recombinases: mathematical models for DNA binding and recombination. Journal of molecular biology, 284(2), 363-384.

Tlusty, T., Bar-Ziv, R., & Libchaber, A. (2004). High-fidelity DNA sensing by protein binding fluctuations. Physical review letters, 93(25), 258103.

Alon, U. (2006). An introduction to systems biology: design principles of biological circuits. CRC press.

Gillespie, D. T. (1977). Exact stochastic simulation of coupled chemical reactions. The journal of physical chemistry, 81(25), 2340-2361.

Elowitz, M. B., & Leibler, S. (2000). A synthetic oscillatory network of transcriptional regulators. Nature, 403(6767), 335-338.

Strelkowa, N., & Barahona, M. (2011). Transient dynamics around unstable periodic orbits in the generalized repressilator model. Chaos: An Interdisciplinary Journal of Nonlinear Science, 21(2), 023104.

Cao, Y., Gillespie, D. T., & Petzold, L. R. (2006). Efficient step size selection for the tau-leaping simulation method. The Journal of chemical physics, 124(4), 044109.

Ma, W., Trusina, A., El-Samad, H., Lim, W. A., & Tang, C. (2009). Defining network topologies that can achieve biochemical adaptation. Cell, 138(4), 760-773.

Contacts
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    430070 P.R.China
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