Team:EPF Lausanne/Data

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DATA


Data For Our Favorite New Parts

Characterization of New Parts Submitted to the Registry

Documented & submitted:

  • CpxR reporters were made with the promoter in forward and reverse direction, respectively BBa_K1486049 and BBa_K1486050.
  • A BioBrick consisting of CpxR under Arabinose Promoter was made, and then sfGFP was fused to CpxR's N terminus (BBa_K1486002) and C terminus (BBa_K1486005).
  • BBa_K1486008 (CxpR & Split IFP1.4 [Cterm + Cterm] http://parts.igem.org/Part:BBa_K1486002 )
  • BBa_K1486043 (LeuZ + rLuc http://parts.igem.org/Part:BBa_K1486043 )
  • BBa_K1486056 (Ga1Mut http:/parts.igem.org/Part:BBa_K1486056 )

Works as expected:

  • BBa_K1486008 (CxpR & Split IFP1.4 [Cterm + Cterm] http://parts.igem.org/Part:BBa_K1486008 )
  • BBa_K1486012 (CpxR IFP1 http://parts.igem.org/Part:BBa_K1486012 )
  • BBa_K1486013 (cpxR IFP2 http://parts.igem.org/Part:BBa_K1486013 )
  • BBa_K1486014 (IFP1 CpxR rLuc http://parts.igem.org/Part:BBa_K1486014 )
  • BBa_K1486015 (IFP2 CpxR rLuc http://parts.igem.org/Part:BBa_K1486015 )
  • BBa_K1486023 (Yeast optimized surperfolder GFP http://parts.igem.org/Part:BBa_K1486023 )
  • BBa_K1486024 (Yeast Kanamycin resistance http://parts.igem.org/Part:BBa_K1486024 )
  • BBa_K1486025 (ADH1 Terminator http://parts.igem.org/Part:BBa_K1486025 )
  • BBa_K1486026 (sfGFP + AHD1 terminator + Kanamycin resistance for yeast http://parts.igem.org/Part:BBa_K1486026 )
  • BBa_K1486027 (R.reniformis luciferase + ADH1 terminator + Kanamycin resistance http://parts.igem.org/Part:BBa_K1486027 )
  • BBa_K1486028 (Yeast optimized sfGFP N-terminus (1-214) http://parts.igem.org/Part:BBa_K1486028 )
  • BBa_K1486029 (sfGFPN + ADH1 terminator + Kanamycin resistance http://parts.igem.org/Part:BBa_K1486029)
  • BBa_K1486031 (CaUra3 selection marker http://parts.igem.org/Part:BBa_K1486031)
  • BBa_K1486034 (R.reniformis luciferase + ADH1 terminator + CaUra3 http://parts.igem.org/Part:BBa_K1486034 )
  • BBa_K1486035 (sfGFPC + ADH1 terminator + CaUra3 Cassette http://parts.igem.org/Part:BBa_K1486035 )


Further Characterization and Improvement of Parts Already in the Registry

  • We realized that Calgary's CpxR reporter biobrick was missing a part of the sequence, so we repaired it and sent it as our BBa_K1486048. The BioBrick was also perfected by testing the complete CpxR target (as Calgary's part did not include the whole sequence). These are BioBricks BBa_K1486049 and BBa_K1486050, with the promoter in forward and reverse direction respectively.
  • Submitted the two parts of the split of EPIC Firefly luciferase (N-terminal part (BBa_K1486016) and C-terminal part (BBa_K1486017)) from Cambridge 2010. The plasmid (BBa_K1486018) containing the two parts of the split separated by a spacer can be very useful as a negative control or to establish a background noise for a complementation assay experiment.
  • Compared the EPIC Firefly luciferase from Cambridge 2010 team to the renilla luciferase (BBa_K1486022) in the same conditions, to determine which one is best suited for a complementation assay experiment. The full and split luciferases has been compared. Renilla luciferase (full and splits(BBa_K1486021)) have been submitted.

Microfluidics

  • Design of SmashColi - a testing chip to analyse the effects of different mechanical stresses on cells
  • Design of FilterColi - a testing chip to analyse the effects of different osmotic stresses on cells
  • Design of the BioPad - a large-scaled chip implemented to be the touch-senstive interface of our final trackpad
  • Design of CleanColi - blabla

MITOMI MITOMI modified SmashColi BioPad FilterColi CleanColi
Full chip





Unit Cell




Designed
Mold fabrication
Fabrication of the chip
Application
Reference MITOMI paper

Human Practices

  • Met with a journalist from the biggest newspaper of our region (Le Temps) and got an article about our project.
  • Our work was commented by Bent Stumpe, inventor of the touchscreen, as well as Rolf Heuer, the current director of the CERN, in Geneva.
  • Organized an outreach event with 80 highschool students at EPFL, teaching them about synthetic biology as well as laboratory techniques and made them participate in a game called « mini iGEM ».
  • Presented iGEM and our work at the Hackuarium, the new BioHackerspace in Lausanne.

Sponsors