From 2014.igem.org
UC Davis iGEM 2014
Assay Components
Michaelis-Menten
Now that we had identified four aldehyde dehydrogenases with unique specificity profiles, we proceeded to experimentally determine the kinetic constants (kcat and KM) of these enzymes on each substrate in our assay conditions.
Kinetic Constants of WT Escherichia coli Aldehyde Dehydrogenase |
Substrate | kcat | kcat Error | KM | KM Error | kcat/KM | kcat/KM Error |
Propionaldehyde | 8.00 | 0.27 | 782.87 | 50.83 | 10221.04 | 748.00 |
Butyraldehyde | 6.27 | 0.28 | 196.68 | 27.65 | 31867.74 | 4700.95 |
Pentanal | 6.18 | 0.22 | 45.92 | 6.77 | 134598.00 | 20398.49 |
Hexanal | 5.37 | 0.53 | 12.65 | 6.36 | 424348.82 | 217516.13 |
Heptanal | Bad Fit | --- | --- | --- | --- | --- |
Octanal | 4.53 | 0.61 | 40.33 | 23.41 | 112265.52 | 66927.82 |
Nonanal | 3.99 | 0.44 | 27.62 | 14.10 | 144584.42 | 75534.70 |
Decanal | Bad Fit | --- | --- | --- | --- | --- |
E-2-Pentenal | 0.94 | 0.05 | 99.33 | 20.74 | 9480.51 | 2054.66 |
E-2-Hexenal | 1.29 | 0.04 | 31.16 | 4.84 | 41478.41 | 6599.45 |
E-2-Octenal | 0.99 | 0.03 | 12.27 | 1.86 | 81100.47 | 12529.78 |
E-2-Nonenal | 0.87 | 0.02 | 9.60 | 1.16 | 90621.93 | 11127.45 |
E-2-Decenal | 0.66 | 0.01 | 13.34 | 1.37 | 49715.95 | 5217.05 |
E,E-2,4-Heptadienal | 0.68 | 0.11 | 142.08 | 75.99 | 4809.31 | 2682.89 |
E,E-2,4-Nonadienal | Bad Fit | --- | --- | --- | --- | --- |
E,E-2,4-Decadienal | ND | ND | ND | ND | ND | ND |
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Kinetic Constants of W176V Escherichia coli Aldehyde Dehydrogenase |
Substrate | kcat | kcat Error | KM | KM Error | kcat/KM | kcat/KM Error |
Propionaldehyde | 7.57 | 1.24 | 2575.71 | 559.82 | 2937.45 | 800.31 |
Butyraldehyde | 4.42 | 0.12 | 532.70 | 32.00 | 8306.37 | 546.34 |
Pentanal | 5.44 | 0.35 | 165.35 | 35.25 | 32877.93 | 7328.72 |
Hexanal | 7.29 | 0.37 | 38.93 | 8.48 | 187159.14 | 41828.31 |
Heptanal | 5.87 | 0.38 | 26.17 | 7.87 | 224363.85 | 68987.72 |
Octanal | 6.55 | 0.45 | 84.25 | 21.41 | 77758.66 | 20464.40 |
Nonanal | 6.41 | 0.31 | 75.29 | 13.54 | 85145.04 | 15837.70 |
Decanal | 4.79 | 0.18 | 47.93 | 7.32 | 99954.31 | 15711.24 |
E-2-Pentenal | ND | ND | ND | ND | ND | ND |
E-2-Hexenal | 0.22 | 0.02 | 28.11 | 9.85 | 7797.24 | 2796.55 |
E-2-Octenal | Bad Fit | --- | --- | --- | --- | --- |
E-2-Nonenal | Bad Fit | --- | --- | --- | --- | --- |
E-2-Decenal | Bad Fit | --- | --- | --- | --- | --- |
E,E-2,4-Heptadienal | ND | ND | ND | ND | ND | ND |
E,E-2,4-Nonadienal | ND | ND | ND | ND | ND | ND |
E,E-2,4-Decadienal | ND | ND | ND | ND | ND | ND |
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Kinetic Constants of WT Rattus norvegicus (Rat) Aldehyde Dehydrogenase |
Substrate | kcat | kcat Error | KM | KM Error | kcat/KM | kcat/KM Error |
Propionaldehyde | 19.90 | 0.51 | 1002.36 | 45.02 | 19856.17 | 1026.79 |
Butyraldehyde | 12.46 | 0.22 | 261.02 | 13.60 | 47740.02 | 2629.46 |
Pentanal | 10.51 | 0.44 | 118.05 | 17.28 | 89060.79 | 13565.38 |
Hexanal | 8.28 | 0.66 | 32.90 | 11.62 | 251744.09 | 91148.58 |
Heptanal | Bad Fit | --- | --- | --- | --- | --- |
Octanal | 6.62 | 0.57 | 107.94 | 32.67 | 61315.18 | 19282.67 |
Nonanal | 7.62 | 0.68 | 88.69 | 29.02 | 85930.06 | 29145.22 |
Decanal | 9.06 | 0.66 | 93.84 | 24.92 | 96541.80 | 26598.58 |
E-2-Pentenal | 8.68 | 0.54 | 694.05 | 86.75 | 12509.32 | 1745.41 |
E-2-Hexenal | 8.54 | 0.15 | 220.14 | 11.54 | 38785.27 | 2139.18 |
E-2-Octenal | 7.51 | 0.47 | 65.81 | 16.08 | 114129.56 | 28807.70 |
E-2-Nonenal | 9.50 | 0.58 | 75.41 | 17.52 | 125987.94 | 30284.84 |
E-2-Decenal | 6.05 | 0.25 | 58.69 | 9.63 | 103066.45 | 17434.71 |
E,E-2,4-Heptadienal | 6.01 | 0.31 | 31.77 | 7.40 | 189320.39 | 45208.07 |
E,E-2,4-Nonadienal | 6.44 | 0.47 | 49.38 | 14.83 | 130374.03 | 40304.11 |
E,E-2,4-Decadienal | 6.32 | 0.33 | 30.75 | 7.27 | 205360.25 | 49735.07 |