Team:UI-Indonesia/Log Book/References

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<sup>[1]</sup> Agtini MD, Soeharno R, Lesmana M, Punjabi NH, Simanjuntak C, Wangsasaputra F, et al (2005) The Burden of Diarrhea, Shigellosis, and Cholera in North Jakarta, Indonesia: Findings From 24 Hours Surveillance. BMC Infectious Disease.; 5: 89. <br>
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<center> Thank you to our Almighty God, for only by His kindness and love we could finally get to finish our dearest project :) </center></h3>
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2. Eisenbach, M. (2001). Bacterial Chemotaxis. Encyclopedia Of Life Sciences.<br>
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<p>
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3. Faruque SM, Albert MJ, Mekalanos JJ (1998).  Epidemiology, Genetics, and Ecology of Toxigenic Vibrio cholerae. Microbiol Mol Biol Rev. 62(4): 1301-1314.<br>
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<br>
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4. Glass RI, Black RE (1992). The Epidemiology of Cholera. Current Topics In Infectious Disease.; 129-154.<br>
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<ul><b><h3> Our Instructors </h3> </b>
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5. Hall-Stoodley L, Costerton J, Stoodley P (2004). Bacterial Biofilms: From the Natural Environment to Infectious Diseases. Nature Reviews Microbiology.; 2(2): 95-108.<br>
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<li>Dr. Budiman Bela, our instructor, for troubleshooting, advising, and letting us use the IHVCB lab for the experiments. <br>
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6. iGEM UT-Tokyo team. (2011).  L-aspartate Chemotaxis Assay. Accessed: 17 Juli 2014. Available on: <https://2011.igem.org/Team:UT-Tokyo/Data/Method.> <br>
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<li>Mr. Muhamad Sahlan, our instructor, for consulting and introducing Mr. Yohda to our team. <br>
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7. Lee CM, Ispanine S, Crossman A (2011). E.coli Periplasmic Alpha Amylase. International Genetically Enginereed Machine (iGEM) Edinburg. Access: 28 August 2014. Available on:< http://parts.igem.org/Part:BBa_K523001><br>
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<li>Dr. Endang Winiati Bachtiar, our instructor, for consulting and give many advices, so with the bio-imaging microscope in DRPM UI. <br>
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8. Lengsfeld C. Schonert S. Dippel R. Boos W (2009). Glucose- and Glucokinase-Controlled mal Gene Expression in Escherichia coli. J. Bacteriol. February. vol. 191 no. 3 701-712.<br>
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<li>Mr. Abinawanto, our instructor, for every consultation and advices.
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9. Molobela P, Cloete TE, Beukes M (2010). Protease and Amylase Enzyme for Biofilm Removal and Degradation of Extracellular Polymeric Substances (EPS) Produced by Pseudomonas flourescens bacteria. Ajmr. 4(4),pp.1515-1524<br>
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</ul><br>
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10. Nijland R, Hall MJ, Burgess JG (2010). Dispersal of Biofilm by Secreted Matrix Degrading Bacterial DNase. Plos ONE 5(12): e15668.doi:10.1371/journal.pone.0015668<br>
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11. Nunez CF, Reffuveille F, Haney EF, Hancock REW (2014). Broad Spectrum Antibiofilm Peptide that Targets a Cellular Stress Response. PloS Pathog 10(5):e1004152.doi:10.1371/journal.ppat.1004152<br>
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12. Ohgishi M (2011). IPTG-inducible CheZ Expression Device. International Genetically Enginereed Machine (iGEM) Tokyo, Japan. Access: 28 August 2014. Available on: http://parts.igem.org/wiki/index.php?title=Part:BBa_K518008<br>
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13. Protein Knowledgebase (UNIPROT) (2014) Substilisin E. Accessed: 28 August 2014. Available on: < http://www.uniprot.org/uniprot/P04189><br>
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14. Shao Yi (2014). Regulation of Quorum sensing in Vibrio harveyi and Vibrio cholerae. Dissertation of Ph.D. Princeton University<br>
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15. Sohrabi B (2012). Nuclease from Staphylococcus aureus. International Genetically Engineered Machine (iGEM) London. Accessed: 28 August 2014. Available on: <http://parts.igem.org/Part:BBa_K729004><br>
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16. Source: Watson JT. Gayer M. Connolly (2007). Epidemic after Natural Disaster. Emerg Infect Dis. Jan; 13(1):1-5.<br>
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17. The Marshal Protocol Knowledge Base ( 2014). Biofilm Bacteria. Accessed : 28 August 2014. Available in:<http://mpkb.org/home/pathogenesis/microbiota/biofilm><br>
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18. UNICAMP EMSE Brazil (2011). HlyA Secretion Signal Peptide. International Genetically Enginereed Machine (iGEM) Brazil. Access: 28 August 2014. Available on: < http://parts.igem.org/Part:BBa_K554002><br>
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19. Watnick PI, Fullner KJ, Kolter R (1999). A Role for the Mannose-sensitive Hemagglutinin in Biofilm Formation by Vibrio cholerae El Tor. J Bacteriol. 181(11): 3606-3609.<br>
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20. Zhu J, Mekalanos JJ (2003). Quorum sensing-dependent Biofilms Enhance Colonization in Vibrio Cholerae. Developmental Cell. 5: 647-656.<br>
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21. Zhu J, Miller MB, Vance RE, Dziejman M, Bassler BL, Mekalanos JJ (2002). Quorum-sensing Regulators Control Virulence Gene Expression in Vibrio cholerae. Proc Natl Acad Sci USA.; 99: 3129–3134.<br>
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<ul><b><h3> Our Advisors </h3></b>
 
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Hanifi, Wian, Taufik, Teguh, for helping us on troubleshooting, gives us advices and solutions, never being tired with us of course.
 
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<br><br></ul>
 
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<ul><b><h3> General Support </h3></b>
 
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<li>All IHVCB Staffs: Ms. Aroem, Ms. Yuli, Ms. Nada, Ms. Ika, Ms. Gema, Mrs. Silvi, Mr. Ibnu, Mr. Atep, Mr. Kober, Mr. Ginanjar, Ms. Wendra, Ms. Sri, Ms. Qoqon, Ms. Eka, Mas Heru, and others who have helped us during our Lab Work.<br>
 
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<li>Professor Boy, Dr. Endang’s husband, to help us characterize using crystaviolet, give us EcoR1 enzyme, and thank you for being very open for consultation.<br>
 
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<li>Hans Yansen, from Faculty of Medicine, for supporting our team.<br>
 
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<li>Marsha Christanvia Wibowo, from Faculty of Biology MIT, for helping us stay in the MIT dormitory.<br>
 
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<li>Mr. Subur, for helping us printing our proposals––for free!<br>
 
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<li>Matthew Billy, from Faculty of Medicine UI, for helping us to process our data with SPSS method.<br>
 
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<li>Yosia Marsino, from Bioprocess Engineering UI, for helping us making our movie as the actor.
 
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</ul>
 
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<br>
 
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<ul><b><h3> Human Practice Support </h3></b>
 
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<li>Professor <a href="http://www.tuat.ac.jp/~yohda/" target="_blank"> Masafumi Yohda</a> from Tokyo University of Agriculture and Technology, as our guest lecturer and interview source about the development of Synbio in Asia and especially in Japan. <br>
 
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<li>Aroem Naroeni, DEA, Ph.D. from Institute of Human Virology and Cancer Biology UI (IHVCB-UI) who advises us on the biosafety aspect of our project and also as our interview source. <br>
 
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<li>Tokyo-Nokogen Team, for the team collaboration by exchanging questionnaire with us. <br>
 
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<li>Paris-Bettencourt Team, for asking us to join the weekly newspaper and finally able to help the MOOC Project.
 
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</ul>
 
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<ul><b><h3> And Last but Not Least </h3></b>
 
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We would like to thank our parents, our big family, our friends, and people who were involved in this project but yet we couldn’t say the names one-by-one. We thank all of you guys! You know you're always in our heart! <br></ul>
 
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Revision as of 02:42, 18 October 2014

Attributions


[1] Agtini MD, Soeharno R, Lesmana M, Punjabi NH, Simanjuntak C, Wangsasaputra F, et al (2005) The Burden of Diarrhea, Shigellosis, and Cholera in North Jakarta, Indonesia: Findings From 24 Hours Surveillance. BMC Infectious Disease.; 5: 89.
2. Eisenbach, M. (2001). Bacterial Chemotaxis. Encyclopedia Of Life Sciences.
3. Faruque SM, Albert MJ, Mekalanos JJ (1998). Epidemiology, Genetics, and Ecology of Toxigenic Vibrio cholerae. Microbiol Mol Biol Rev. 62(4): 1301-1314.
4. Glass RI, Black RE (1992). The Epidemiology of Cholera. Current Topics In Infectious Disease.; 129-154.
5. Hall-Stoodley L, Costerton J, Stoodley P (2004). Bacterial Biofilms: From the Natural Environment to Infectious Diseases. Nature Reviews Microbiology.; 2(2): 95-108.
6. iGEM UT-Tokyo team. (2011). L-aspartate Chemotaxis Assay. Accessed: 17 Juli 2014. Available on:
7. Lee CM, Ispanine S, Crossman A (2011). E.coli Periplasmic Alpha Amylase. International Genetically Enginereed Machine (iGEM) Edinburg. Access: 28 August 2014. Available on:< http://parts.igem.org/Part:BBa_K523001>
8. Lengsfeld C. Schonert S. Dippel R. Boos W (2009). Glucose- and Glucokinase-Controlled mal Gene Expression in Escherichia coli. J. Bacteriol. February. vol. 191 no. 3 701-712.
9. Molobela P, Cloete TE, Beukes M (2010). Protease and Amylase Enzyme for Biofilm Removal and Degradation of Extracellular Polymeric Substances (EPS) Produced by Pseudomonas flourescens bacteria. Ajmr. 4(4),pp.1515-1524
10. Nijland R, Hall MJ, Burgess JG (2010). Dispersal of Biofilm by Secreted Matrix Degrading Bacterial DNase. Plos ONE 5(12): e15668.doi:10.1371/journal.pone.0015668
11. Nunez CF, Reffuveille F, Haney EF, Hancock REW (2014). Broad Spectrum Antibiofilm Peptide that Targets a Cellular Stress Response. PloS Pathog 10(5):e1004152.doi:10.1371/journal.ppat.1004152
12. Ohgishi M (2011). IPTG-inducible CheZ Expression Device. International Genetically Enginereed Machine (iGEM) Tokyo, Japan. Access: 28 August 2014. Available on: http://parts.igem.org/wiki/index.php?title=Part:BBa_K518008
13. Protein Knowledgebase (UNIPROT) (2014) Substilisin E. Accessed: 28 August 2014. Available on: < http://www.uniprot.org/uniprot/P04189>
14. Shao Yi (2014). Regulation of Quorum sensing in Vibrio harveyi and Vibrio cholerae. Dissertation of Ph.D. Princeton University
15. Sohrabi B (2012). Nuclease from Staphylococcus aureus. International Genetically Engineered Machine (iGEM) London. Accessed: 28 August 2014. Available on:
16. Source: Watson JT. Gayer M. Connolly (2007). Epidemic after Natural Disaster. Emerg Infect Dis. Jan; 13(1):1-5.
17. The Marshal Protocol Knowledge Base ( 2014). Biofilm Bacteria. Accessed : 28 August 2014. Available in:
18. UNICAMP EMSE Brazil (2011). HlyA Secretion Signal Peptide. International Genetically Enginereed Machine (iGEM) Brazil. Access: 28 August 2014. Available on: < http://parts.igem.org/Part:BBa_K554002>
19. Watnick PI, Fullner KJ, Kolter R (1999). A Role for the Mannose-sensitive Hemagglutinin in Biofilm Formation by Vibrio cholerae El Tor. J Bacteriol. 181(11): 3606-3609.
20. Zhu J, Mekalanos JJ (2003). Quorum sensing-dependent Biofilms Enhance Colonization in Vibrio Cholerae. Developmental Cell. 5: 647-656.
21. Zhu J, Miller MB, Vance RE, Dziejman M, Bassler BL, Mekalanos JJ (2002). Quorum-sensing Regulators Control Virulence Gene Expression in Vibrio cholerae. Proc Natl Acad Sci USA.; 99: 3129–3134.

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