"
Team:UCL/Science/Proto
From 2014.igem.org
(Difference between revisions)
Adamdenyer (Talk | contribs) |
m |
||
| Line 19: | Line 19: | ||
<ul class="tabs"> | <ul class="tabs"> | ||
<li><a href="#view1">Creating competent cells</a></li> | <li><a href="#view1">Creating competent cells</a></li> | ||
| - | <li><a href="#view2"> | + | <li><a href="#view2">Digestion</a></li> |
| - | <li><a href="#view3"> | + | <li><a href="#view3">Ligation</a></li> |
| - | <li><a href="#view4"> | + | <li><a href="#view4">Making LB Agar Plates</a></li> |
| - | + | <li><a href="#view5">Transformation</a></li> | |
| - | <li><a href="#view6"> | + | <li><a href="#view6">Agarose Gel Electrophoresis</a></li> |
<li><a href="#view7">Protocol</a></li> | <li><a href="#view7">Protocol</a></li> | ||
</ul> | </ul> | ||
| Line 53: | Line 53: | ||
8. Discard supernatant and gently resuspend on 5ml cold 0.1M CaCl/15%Glycerol.<br/> | 8. Discard supernatant and gently resuspend on 5ml cold 0.1M CaCl/15%Glycerol.<br/> | ||
9. Dispense in microtubes (300ųl/tube). Freeze at -80oC.<br/> | 9. Dispense in microtubes (300ųl/tube). Freeze at -80oC.<br/> | ||
| + | |||
| + | Note: Home-made competent cells were used to transform registry BioBricks | ||
</p1> | </p1> | ||
| + | </div> | ||
| + | |||
| + | |||
| + | |||
| + | <!--- This is the second biobrick ---> | ||
| + | <div id="view2"><div class="textTitle"><h4>Digestion</h4></div><br> | ||
| + | <p1> | ||
| + | <b>Materials</b><br/> | ||
| + | MilliQ water, NEBuffer 2.1, BSA, Pipettes and autoclaved tips Enzymes: EcoRI-HF, SpeI, XbaI and PstI, <br/><br/> | ||
| + | |||
| + | <b>Notes</b><br/> | ||
| + | 1. The volume of DNA to be digested will depend on the concentration obtained from miniprep of the DNA from culture. This must be made up to 500ng for each 50ul digestion<br/> | ||
| + | eg. | ||
| + | |||
| + | <b>Procedure</b><br/> | ||
| + | </div> | ||
| + | |||
| + | <!--- This is the third biobrick ---> | ||
| + | <div id="view3"><div class="textTitle"><h4>Ligation</h4></div><br> | ||
| + | </div> | ||
| + | |||
| + | <!--- This is the fourth biobrick ---> | ||
| + | <div id="view4"><div class="textTitle"><h4>Protocol</h4></div><br> | ||
</div> | </div> | ||
<!--- This is the first biobrick ---> | <!--- This is the first biobrick ---> | ||
| - | <div id=" | + | <div id="view5"><div class="textTitle"><h4>Plasmid DNA Transformation</h4></div><br> |
<p1> | <p1> | ||
| Line 73: | Line 98: | ||
If biobrick from distribution, resuspend DNA well in 10uL ddH20<br/><br/> | If biobrick from distribution, resuspend DNA well in 10uL ddH20<br/><br/> | ||
| - | 4. Add | + | 4. Add 2-5uL DNA i.e. ligation product or BioBrick re-suspension to 50uL competent cells<br/> |
| - | 5 | + | 5. Flick by hand or pipette up and down gently<br/> |
| - | + | 6. Place cells on ice for 30 minutes<br/> | |
| - | + | 7. Place cells in water bath or heat block at 42oC for 30 seconds<br/> | |
| - | + | 8. Place cells on ice for 2 minutes<br/> | |
| - | + | 9. Add 950ul of SOC or LB media and place in a shaking incubator for a maximum of 2 hours (37oC/250rpm) | |
| - | + | 10. Label two petri dishes with LB agar and the appropriate antibiotics(s) with the date, plasmid backbone and ligated genes/parts and antibiotic added.<br/> | |
| - | + | You may also choose to write down the volume of transformed product plated <br/> | |
| - | + | 11. Spin down the incubated cells for 2mins at 4000rpm to obtain a cell pellet.<br/> | |
| - | 12. | + | 12. Pipette 100ul of the supernatant or fresh LB media before discarding the rest of the supernatant and re-suspending the pellet in the 100ul of media <br/> |
| - | 13. Incubate the plates at 37ºC for 12-14 hours, | + | 13. Incubate the plates at 37ºC for 12-14 hours, always place plates lid-down.<br/><br/> |
If incubated for too long the antibiotics start to break down and un-transformed cells will begin to grow. This is especially true for ampicillin - because the resistance enzyme is excreted by the bacteria, and inactivates the antibiotic outside of the bacteria<br/><br/> | If incubated for too long the antibiotics start to break down and un-transformed cells will begin to grow. This is especially true for ampicillin - because the resistance enzyme is excreted by the bacteria, and inactivates the antibiotic outside of the bacteria<br/><br/> | ||
| Line 93: | Line 118: | ||
<p1> | <p1> | ||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
</div> | </div> | ||
Revision as of 16:59, 17 October 2014
- Creating competent cells
- Digestion
- Ligation
- Making LB Agar Plates
- Transformation
- Agarose Gel Electrophoresis
- Protocol
Creating competent cells
LB Media, 50ml Falcon Tubes, Ice, Chilled centrifuge, Calcium Chloride (CaCl2), Eppendorf tubes (300ul/tube)
Procedure
1. Inoculate a single colony into 5ml Lb in 50ml falcon tube. Grown O/N @ 37oC
2. Use 1ml to inoculate 100ml of LB in 250ml bottle the next morning.
Shake @ 37oC for 1.5-3 hours.
Or
1. Inoculate a single colony into 25ml LB in a 250ml bottle in the morning
2. Shake @ 37oC for 4-6 hours.
Then…
3. Put the cells on ice for 10mins (keep cold from now on).
4. Collect the cells by centrifugation in the big centrifuge for 3 minutes @ 6Krpm.
5. Decant supernatant and gently resuspend on 10ml cold 0.1M CaCl (cells sensitive to mechanical disruption).
6. Incubate on ice x 20 minutes
7. Centrifuge as in 2.
8. Discard supernatant and gently resuspend on 5ml cold 0.1M CaCl/15%Glycerol.
9. Dispense in microtubes (300ųl/tube). Freeze at -80oC.
Note: Home-made competent cells were used to transform registry BioBricks
Digestion
MilliQ water, NEBuffer 2.1, BSA, Pipettes and autoclaved tips Enzymes: EcoRI-HF, SpeI, XbaI and PstI,
Notes
1. The volume of DNA to be digested will depend on the concentration obtained from miniprep of the DNA from culture. This must be made up to 500ng for each 50ul digestion
eg. Procedure
Ligation
Protocol
Plasmid DNA Transformation
Competent Cells, Plasmid DNA, Antibiotic Plates
Procedure
1. Thaw competent cells on ice
2. 50uL cells enough for 1 transformation
3. Add 1ug of DNA to 50uL competent cells
If biobrick from distribution, resuspend DNA well in 10uL ddH20
4. Add 2-5uL DNA i.e. ligation product or BioBrick re-suspension to 50uL competent cells
5. Flick by hand or pipette up and down gently
6. Place cells on ice for 30 minutes
7. Place cells in water bath or heat block at 42oC for 30 seconds
8. Place cells on ice for 2 minutes
9. Add 950ul of SOC or LB media and place in a shaking incubator for a maximum of 2 hours (37oC/250rpm) 10. Label two petri dishes with LB agar and the appropriate antibiotics(s) with the date, plasmid backbone and ligated genes/parts and antibiotic added.
You may also choose to write down the volume of transformed product plated
11. Spin down the incubated cells for 2mins at 4000rpm to obtain a cell pellet.
12. Pipette 100ul of the supernatant or fresh LB media before discarding the rest of the supernatant and re-suspending the pellet in the 100ul of media
13. Incubate the plates at 37ºC for 12-14 hours, always place plates lid-down.
If incubated for too long the antibiotics start to break down and un-transformed cells will begin to grow. This is especially true for ampicillin - because the resistance enzyme is excreted by the bacteria, and inactivates the antibiotic outside of the bacteria
You can pick a single colony, make a glycerol stock, grow up a cell culture and miniprep.
Count the colonies on the 20 μl control plate and calculate your competent cell efficiency.
