[1] [http://dx.doi.org/10.1038/nrg3227 Slusarczyk, A. L., A., Weiss, R., Foundations for the design and implementation of synthetic genetic circuits, Nature Reviews Genetics, 13, 2012]

[2] [http://dx.doi.org/10.1016/j.molcel.2014.06.007 Ausländer, D. et al., A Synthetic Multifunctional Mammalian pH Sensor and CO₂ Transgene-Control Device, Molecular Cell, 55, 2014]

[3] [http://dx.doi.org/10.1016/j.cbpa.2012.04.009 Bugaj, L. J., Schaffer, D. V., Bringing next-generation therapeutics to the clinic through synthetic biology, Current Opinion in Chemical Biology, 16, 2012]

[4] [http://dx.doi.org/10.1021/bi00512a013 Eberhard, A. et al., Structural identification of autoinducer of Photobacterium fischeri luciferase, Biochemistry, 20, 1981]

[5] [http://dx.doi.org/10.1098/rstb.2007.2039 Williams, P. et al., Look who's talking: communication and quorum sensing in the bacterial world, Philosophical Transactions of the Royal Society B: Biological Sciences, 362.1483, 2007]

[6] [http://dx.doi.org/10.1146/annurev.bioeng.10.061807.160536 Jayaraman, A., Wood, T. K. Bacterial quorum sensing: signals, circuits, and implications for biofilms and disease, Annual Review of Biomedical Engineering, 10, 2008]

[7] [http://dx.doi.org/10.1126/science.1237738 Benenson, Y., Recombinatorial Logic, Science, 340, 2013]

[8] [http://dx.doi.org/10.1038/nbt.2510 Siuti, P. et al., Synthetic circuits integrating logic and memory in living cells, Nature Biotechnology, 31.5, 2013]

[9] [http://dx.doi.org/10.1126/science.1232758 Bonnet, J. et al., Amplifying genetic logic gates, Science, 340.6132, 2013]

[10] [http://dx.doi.org/10.1038/nbt986 Collins, J. et al., Engineered riboregulators enable post-transcriptional control of gene expression, Nature Biotechnology, 22, 2004]

[11] [http://www.wolframscience.com/nksonline/toc.html Stephen, W., A new kind of science, Vol. 5, Champaign: Wolfram media, 2002]

[12][http://www.plluisi.org/emergence.html Luisi, P. L., The emergence of life: from chemical origins to synthetic biology, Chapter 6. Cambridge University Press, 2006]

[13][http://www.nature.com/nbt/journal/v27/n10/full/nbt.1568.html Salis, H. M., Mirsky, E. A., Voigt, C. A., Automated design of synthetic ribosome binding sites to control protein expression, Nature Biotechnology, 27, 2009]

[14][http://www.sciencedirect.com/science/article/pii/S1046202310003142 Brown, W. R. A. et al., Serine recombinases as tools for genome engineering, Methods 53.4: 372-379, 2011]

[15][http://www.sciencedirect.com/science/article/pii/0378111977900002 Bolivar, F. et al., Construction and characterization of new cloning vehicles. II. A multipurpose cloning system, Gene 2.2: 95-113, 1977]

[16][http://onlinelibrary.wiley.com/store/10.1002/bit.22660/asset/22660_ftp.pdf?v=1&t=i16i1rwr&s=2e51942db05c273bde36a22670b3baa138f7faf7 Lennen, R. M. et al., A Process for Microbial Hydrocarbon Synthesis: Overproduction of Fatty Acids in Escherichia coli and Catalytic Conversion to Alkanes Biotechnology and Bioengineering 106.2: 193-202, 2010]

[17] [http://kirschner.med.harvard.edu/files/bionumbers/Protein%20half-lives%20in%20E.%20coli.pdf Maurizi M. R., Proteases and protein degradation in Escherichia coli, Experientia. 1992 Feb 15 48(2):178-201. p.181 table 2]

[18] [http://www.pnas.org/content/109/15/5850.abstract Callura, J. M., Cantor, C. R., Collins, J. J., Genetic switchboard for synthetic biology applications, PNAS, 2012]

[19] [http://www.biomedcentral.com/1752-0509/7/6.abstract Weber M., Buceta J., Dynamics of the quorum sensing switch: stochastic and non-stationary effects, BMC Systems Biology, 2013]

[20] [http://www.nature.com/nature/journal/v434/n7037/full/nature03461.html.abstract Basu S., Gerchman Y., Collins C.H., Arnold F.H., Weiss R., A synthetic multicellular system for programmed pattern formation, Nature, 2005]

[21] Team MIT 2010

[22] [http://www.ncbi.nlm.nih.gov/pubmed/10329160, Liang S. T., Ehrenberg M., Dennis P., Bremer H.,Decay of rplN and lacZ mRNA in Escherichia coli, Journal of molecular biology, 1999]

[23] [http://www.hbcpnetbase.com/ Haynes, W. M., ed. CRC handbook of chemistry and physics, CRC press, 2012]

[24] [http://onlinelibrary.wiley.com/doi/10.1002/3527600035.bpol6008/full Draget, K. I., Smidsrød, O., Skjåk-Bræk, G., Alginates from Algae, Biopolymers Online, 6, 2005]

[25] [http://ac.els-cdn.com/016777999090139O/1-s2.0-016777999090139O-main.pdf?_tid=ae84eb60-54a0-11e4-b254-00000aab0f6c&acdnat=1413401162_64b33e6ee56a40fe717b500d16a4db15 Smidsrød, O., Skjåk-Bræk, G., Alginate as immobilization matrix for cells, Trends in Biotechnology, 8, 1990]

[26] [http://www.biomedcentral.com/1471-2105/15/136, O., Egea, J.A et. al, "MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics ", BMC Bioinformatics, 15:136, 2014]

[27] [http://jb.asm.org/content/185/5/1485.full Stewart, Philip S. "Diffusion in biofilms." Journal of bacteriology 185.5 : 1485-1491, 2003]

[28] [http://jb.asm.org/content/163/3/1210.short Kaplan, HEIDI B., and E. P. Greenberg. "Diffusion of autoinducer is involved in regulation of the Vibrio fischeri luminescence system." Journal of Bacteriology 163.3 : 1210-1214, 1985]

[29] [http://www.sabrinaandlars.ch/download/scientific/MasterThesis.pdf Lars Müller, "Growing of encapsulated Escherichia coli in picolitre sized calcium alginate beads", Master Thesis, Supervisor: Dr. Rene Pellaux, Bioprocess Laboratory ETH Zürich, 2008]

[30] [http://onlinelibrary.wiley.com/doi/10.1002/bit.260280609/pdf Hannoun, Betty JM, and Gregory Stephanopoulos. "Diffusion coefficients of glucose and ethanol in cell‐free and cell‐occupied calcium alginate membranes." Biotechnology and bioengineering 28.6 : 829-835, 1986]

[31] [http://dx.doi.org/10.1039/C2LC40761B Kitson, P.J., Rosnes, M. H., Sans, V., Dragone, V., Cronin, L., Configurable 3D-Printed millifluidic and microfluidic ‘lab on a chip’ reactionware devices, Lab on a Chip, 12, 2012]

[32] [http://dx.doi.org/10.1038/nbt986 Isaacs, F. J., Dwyer, D. J., Ding, C, Pervouchine, D. D., Cantor, C. R., Collins, J. J., Engineered riboregulators enable post-transcriptional control of gene expression, Nature Biotechnology, 22, 2004]

[33] [http://dx.doi.org/10.1038/nbt986 Panke, S., Meyer, S., Huber, C. M., Witholt, B., Wubbolts, M.G., An alkane-responsive expression system for the production of fine chemicals, Applied and environmental microbiology, 65,1999]