Team:Bielefeld-CeBiTec/Notebook/Journal/CO2-fixation/Sep
From 2014.igem.org
(Difference between revisions)
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<div class="content" style="margin-right:10%; margin-left:10%"> | <div class="content" style="margin-right:10%; margin-left:10%"> | ||
+ | <ul> | ||
+ | <li><b>tkt</b></li> | ||
+ | <ul> | ||
+ | <li>This week we want to the enzymes for the SBPase assay.</li> | ||
+ | <ul> | ||
+ | <li>Cultivation of pet16b_tkt in 250 ml <a href="https://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Media#LBmedium" target="_blank">LB medium</a></li> | ||
+ | <li>Induction with 1 mM IPTG at OD 0.8. Taking samples:t<sub>0</sub>, t<sub>1</sub>, t<sub>2</sub>, t<sub>3</sub>, t<sub>15</sub>, t<sub>17</sub></li> | ||
+ | <li><a href="https://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Protocols#Sodiumdodecylsulfatepolyacrylamidegelelectrophoresis (SDS-PAGE)" target="_blank">SDS-Page</a> of cultivation result in correct bands at ~100kD</li> | ||
+ | <li><a href="https://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Protocols#HisTrapFFPurification" target="_blank">His-Tag purification</a> of tkt</li> | ||
+ | <li><a href="https://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Protocols#Sodiumdodecylsulfatepolyacrylamidegelelectrophoresis (SDS-PAGE)" target="_blank">SDS-Page</a> of His-Tag purification result in correct bands at imidazol concentration of ...</li> | ||
+ | </ul> | ||
+ | </ul> | ||
+ | </ul> | ||
+ | <ul> | ||
+ | <li><b>fba</b></li> | ||
+ | <ul> | ||
+ | <li>This week we want to the enzymes for the SBPase assay.</li> | ||
+ | <ul> | ||
+ | <li>Cultivation of pet16b_fba in 250 ml <a href="https://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Media#LBmedium" target="_blank">LB medium</a></li> | ||
+ | <li>Induction with 1 mM IPTG at OD 0.8. Taking samples:t<sub>0</sub>, t<sub>1</sub>, t<sub>2</sub>, t<sub>3</sub>, t<sub>15</sub>, t<sub>17</sub></li> | ||
+ | <li><a href="https://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Protocols#Sodiumdodecylsulfatepolyacrylamidegelelectrophoresis (SDS-PAGE)" target="_blank">SDS-Page</a> of cultivation result in correct bands at ~40kD</li> | ||
+ | <li><a href="https://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Protocols#HisTrapFFPurification" target="_blank">His-Tag purification</a> of fba</li> | ||
+ | <li><a href="https://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Protocols#Sodiumdodecylsulfatepolyacrylamidegelelectrophoresis (SDS-PAGE)" target="_blank">SDS-Page</a> of His-Tag purification result in correct bands at imidazol concentration of ...</li> | ||
+ | </ul> | ||
+ | </ul> | ||
+ | </ul> | ||
+ | <ul> | ||
+ | <li><b>glpX</b></li> | ||
+ | <ul> | ||
+ | <li>This week we want to do the enzyme assay for the SBPase.</li> | ||
+ | <ul> | ||
+ | <li>Cultivation of pet16b_glpX in 250 ml <a href="https://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Media#LBmedium" target="_blank">LB medium</a></li> | ||
+ | <li>Induction with 1 mM IPTG at OD 0.8. Taking samples:t<sub>0</sub>, t<sub>1</sub>, t<sub>2</sub>, t<sub>3</sub>, t<sub>15</sub>, t<sub>17</sub></li> | ||
+ | <li><a href="https://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Protocols#Sodiumdodecylsulfatepolyacrylamidegelelectrophoresis (SDS-PAGE)" target="_blank">SDS-Page</a> of cultivation result in correct bands at ~38kD</li> | ||
+ | <li><a href="https://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Protocols#HisTrapFFPurification" target="_blank">His-Tag purification</a> of glpX</li> | ||
+ | <li><a href="https://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Protocols#Sodiumdodecylsulfatepolyacrylamidegelelectrophoresis (SDS-PAGE)" target="_blank">SDS-Page</a> of His-Tag purification result in correct bands at imidazol concentration of ...</li> | ||
+ | </ul> | ||
+ | </ul> | ||
+ | </ul> | ||
+ | |||
+ | |||
</div> | </div> | ||
</div> | </div> |
Revision as of 20:45, 6 October 2014
September |
- csoS1-4
- We tried to amplify csoS1-4 (shell proteins) for a fusion with GFP.
- PCR amplification (fw-GFP-csoS1B, rv-rv-GFP-csoS1A)
- Annealing temperature: 54 °C
- Bands as expected (~4000 bp (~1800 bp csoS1-4, ~2200 bp pSB1C3))
- PCR products were purified
- csoS1-4 and GFP
- We tried to assemble the shell proteins of the carboxysome and GFP.
- Gibson Assembly with pSB1C3_csoS1-4 and GFP
- Transformation with electrocompotetent cells
- Colony PCR (fw-csoS1A-GFP, rv-csoS1B-GF)
- Annealing temperature: 68 °C
- Bands as expected (~1000 bp)
- Plasmid isolation of pSB1C3_csoS1-4_GFP
- Restriction digestion with NotI
- Bands as expected (~2000 bp and ~2400 bp)
- csoS1-4_GFP and T7
- We tried to assemble our pSB1C3_csoS1-4_GFP construct with the T7 promotor.
- BioBrick Assembly (Suffix)
- Transformation with electrocompotetent cells
- Colony PCR (VF-Primer, rv_csoS4A_PstI)
- Annealing temperature: 55 °C
- Bands as expected (~320 bp)
- can and csoS1-4
- This week we tried to find positive clones of our transformation.
- Colony PCR (VF-Primer, VR-Primer)
- Annealing temperature: 55 °C
- Bands as expected (~3600 bp)
- Plasmid isolation of pSB1C3_can_csoS1-4
- Restriction digestion with EcoRI and PstI
- Bands as expected (~2100 bp and ~3300 bp)
- can_csoS1-4 and csoS1D
- We tried to assemble our pSB1C3_can_csoS1-4 construct with csoS1D.
- BioBrick Assembly (Suffix)
- Transformation with electrocompotetent cells
- Colony PCR (VF-Primer, VR-Primer)
- Annealing temperature: 55 °C
- Bands as expected (~4300 bp)
- Plasmid isolation of pSB1C3_can_csoS1-4_csoS1D
- Restriction digestion with NotI
- Bands as expected (~2000 bp and ~4000 bp)
- Hneap and T7
- This week we tried to assemble the T7 promotor with the Hneap.
- BioBrick Assembly (Suffix)
- Transformation with electrocompotetent cells
- Hneap and T7
- We tried to find positiv clones of pSB3A2_T7_Hneap.
- Colony PCR (VF-Primer, VR-Primer)
- Annealing temperature: 55 °C
- Bands as expected (~2000 bp)
- Plasmid isolation of pSB1A2_T7_Hneap
- Restriction digestion with EcoRI and PstI
- Bands as expected (~2000 bp and ~1800 bp)
- sap
- We tried to assemble both parts of sap.
- PCR amplification on the pJet plasmid for sap_2 (sap_2_fwd, sap_2_rev)
- Annealing temperature: 55 °C
- Bands as expected (~1500 bp)
- Gibson Assembly with sap_1, sap_2 and pSB1C3
- Transformation with electrocompotetent cells
- Colony PCR (VF-Primer, VR-Primer)
- Annealing temperature: 55 °C
- Bands as expected (~3000 bp)
- Restriction digestion with EcoRI and PstI
- Bands as expected (~2000 bp (backbone) and ~2700 bp (insert))
- Restriction digestion with EcoRV
- Bands as expected (~1500 bp and ~3200 bp)
- tkt
- This week we want to the enzymes for the SBPase assay.
- Cultivation of pet16b_tkt in 250 ml LB medium
- Induction with 1 mM IPTG at OD 0.8. Taking samples:t0, t1, t2, t3, t15, t17
- SDS-Page of cultivation result in correct bands at ~100kD
- His-Tag purification of tkt
- SDS-Page of His-Tag purification result in correct bands at imidazol concentration of ...
- fba
- This week we want to the enzymes for the SBPase assay.
- Cultivation of pet16b_fba in 250 ml LB medium
- Induction with 1 mM IPTG at OD 0.8. Taking samples:t0, t1, t2, t3, t15, t17
- SDS-Page of cultivation result in correct bands at ~40kD
- His-Tag purification of fba
- SDS-Page of His-Tag purification result in correct bands at imidazol concentration of ...
- glpX
- This week we want to do the enzyme assay for the SBPase.
- Cultivation of pet16b_glpX in 250 ml LB medium
- Induction with 1 mM IPTG at OD 0.8. Taking samples:t0, t1, t2, t3, t15, t17
- SDS-Page of cultivation result in correct bands at ~38kD
- His-Tag purification of glpX
- SDS-Page of His-Tag purification result in correct bands at imidazol concentration of ...