Team:Bielefeld-CeBiTec/Notebook/Organisms

From 2014.igem.org

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                 <a  style="font-size:24px" href="#"><h6><i>Escherichia coli</i>  <a href="https://static.igem.org/mediawiki/2014/ .pdf" target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
                 <a  style="font-size:24px" href="#"><h6><i>Escherichia coli</i>  <a href="https://static.igem.org/mediawiki/2014/ .pdf" target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
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                 <a  style="font-size:24px" href="#"><h6><i>Lactococcus lactis</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
                 <a  style="font-size:24px" href="#"><h6><i>Lactococcus lactis</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
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       <a href="https://static.igem.org/mediawiki/2014/0/02/Bielefeld-CeBiTec_2014-09-29_Llactis.png" target="_blank"><img src="https://static.igem.org/mediawiki/2014/0/02/Bielefeld-CeBiTec_2014-09-29_Llactis.png" width="250px"></a>
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<p><br>Coding sequences of this organism were used for the isobutanol production:
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<ul>
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<li>kivD - &alpha;-ketoisovalerate decarboxylase</li>
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<li>adhA - Alcoholdehydrogenase</li>
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</ul></p>
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                 <a  style="font-size:24px" href="#"><h6><i>Halothiobacillus neapolitanus</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
                 <a  style="font-size:24px" href="#"><h6><i>Halothiobacillus neapolitanus</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
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<p><br>Coding sequences of this organism were used for the carboxysome:
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<ul>
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<li>sap - shell associated protein</li>
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<li>can - carbonic anhydrase</li>
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<li>csoS1-4 - shell protein</li>
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<li>csoS1D - pore protein</li>
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</ul></p>
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                 <a  style="font-size:24px" href="#"><h6><i>Bacillus subtilis</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
                 <a  style="font-size:24px" href="#"><h6><i>Bacillus subtilis</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
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       <a href="https://static.igem.org/mediawiki/2014/8/88/Bielefeld-CeBiTec_2014-09-29_Bsubtilis.png" target="_blank"><img src="https://static.igem.org/mediawiki/2014/8/88/Bielefeld-CeBiTec_2014-09-29_Bsubtilis.png" width="250px"></a>
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<p><br>A coding sequence of this organism was used for the isobutanol production:
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<ul>
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<li>alsS - &alpha;-acetolactate synthase</li>
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</ul></p>
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                 <a  style="font-size:24px" href="#"><h6><i>Synechococcus elongatus</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
                 <a  style="font-size:24px" href="#"><h6><i>Synechococcus elongatus</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
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       <a href="https://static.igem.org/mediawiki/2014/2/20/Bielefeld-CeBiTec_2014-09-29_Selongatus.png" target="_blank"><img src="https://static.igem.org/mediawiki/2014/2/20/Bielefeld-CeBiTec_2014-09-29_Selongatus.png" width="250px"></a>
       <a href="https://static.igem.org/mediawiki/2014/2/20/Bielefeld-CeBiTec_2014-09-29_Selongatus.png" target="_blank"><img src="https://static.igem.org/mediawiki/2014/2/20/Bielefeld-CeBiTec_2014-09-29_Selongatus.png" width="250px"></a>
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<p><br>A coding sequence of this organism was used for the carbon dioxide fixation:
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<ul>
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<li>RuBisCO - Ribulose 1,5-bisphosphate carboxylase / oxygenase</li>
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</ul></p>
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                 <a  style="font-size:24px" href="#"><h6><i>Actinobacillus succinogenes</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
                 <a  style="font-size:24px" href="#"><h6><i>Actinobacillus succinogenes</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
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       <a href="https://static.igem.org/mediawiki/2014/4/4a/Bielefeld-CeBiTec_2014-09-29_Asuccinogenes.png" target="_blank"><img src="https://static.igem.org/mediawiki/2014/4/4a/Bielefeld-CeBiTec_2014-09-29_Asuccinogenes.png" width="250px"></a>
       <a href="https://static.igem.org/mediawiki/2014/4/4a/Bielefeld-CeBiTec_2014-09-29_Asuccinogenes.png" target="_blank"><img src="https://static.igem.org/mediawiki/2014/4/4a/Bielefeld-CeBiTec_2014-09-29_Asuccinogenes.png" width="250px"></a>
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<p><br>A coding sequence of this organism was used for the transport of reduction equivalents:
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<li>asuC_1813/1814/1815/1816 - fumarate reductase</li>
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</ul></p>
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                 <a  style="font-size:24px" href="#"><h6><i>Geobacter sulfurreducens</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
                 <a  style="font-size:24px" href="#"><h6><i>Geobacter sulfurreducens</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
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                 <a  style="font-size:24px" href="#"><h6><i>Sinorhizobium meliloti</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
                 <a  style="font-size:24px" href="#"><h6><i>Sinorhizobium meliloti</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
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                 <a  style="font-size:24px" href="#"><h6><i>Corynebacterium glutamicum</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
                 <a  style="font-size:24px" href="#"><h6><i>Corynebacterium glutamicum</i> <a href="https://static.igem.org/mediawiki/2014/.pdf"  target="_blank"> <img src="https://static.igem.org/mediawiki/2014/b/bd/Bielefeld-CeBiTec_2014-08-12_pdf_Icon.png" height="30px"> </a></h6></a>
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<p><br>A coding sequence of this organism was used for an enzyme assay:
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<li>pgk - Phosphoglycerate kinase</li>
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Revision as of 10:44, 30 September 2014


Organisms

DomainBacteria
PhylumProteobacteria
ClassGammaproteobacteria
OrderEnterobacteriales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesE. coli









Coding sequences of this organism were used for the isobutanol production:

  • kivD - α-ketoisovalerate decarboxylase
  • adhA - Alcoholdehydrogenase

DomainBacteria
PhylumFirmicutes
ClassBacilli
OrderLactobacillales
FamilyStreptococcaceae
GenusLactococcus
SpeciesL. lactis


Coding sequences of this organism were used for the carboxysome:

  • sap - shell associated protein
  • can - carbonic anhydrase
  • csoS1-4 - shell protein
  • csoS1D - pore protein

DomainBacteria
PhylumProteobacteria
Classγ-Proteobacteria
OrderChromatiales
FamilyHalothiobacillaceae
GenusHalothiobacillus
SpeciesH. neapolitanus


A coding sequence of this organism was used for the isobutanol production:

  • alsS - α-acetolactate synthase

DomainBacteria
PhylumFirmicutes
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusBacillus
SpeciesB. subtilis


A coding sequence of this organism was used for the carbon dioxide fixation:

  • RuBisCO - Ribulose 1,5-bisphosphate carboxylase / oxygenase

DomainBacteria
PhylumCyanobacteria
ClassOscillatoriophycideae
OrderChroococcales
GenusSynechococcus
SpeciesS. elongatus


A coding sequence of this organism was used for the transport of reduction equivalents:

  • asuC_1813/1814/1815/1816 - fumarate reductase

DomainBacteria
PhylumProteobacteria
Classγ-Proteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusActinobacillus
SpeciesA. succinogenes
DomainBacteria
PhylumProteobacteria
Subphylumδ / ε-Proteobacteria
Classδ-Proteobacteria
OrderDesulfuromonadales
FamilyGeobacteraceae
GenusGeobacter
SpeciesG. sulfurreducens











DomainBacteria
PhylumProteobacteria
Classα-Proteobacteria
OrderRhizobiales
FamilyRhizobiaceae
GenusSinorhizobium
SpeciesS. meliloti











A coding sequence of this organism was used for an enzyme assay:

  • pgk - Phosphoglycerate kinase

DomainBacteria
PhylumActinobacteria
ClassActinobacteridae
OrderActinomycetales
SuborderCorynebacterineae
FamilyCorynebacteriaceae
GenusCorynebacterium
SpeciesC. glutamicum