Team:UESTC-China/Protocol

From 2014.igem.org

(Difference between revisions)
Line 598: Line 598:
   <div id="SensorEditingArea" class="SensorEditingAreaClass">
   <div id="SensorEditingArea" class="SensorEditingAreaClass">
     <div class="tableEditing">
     <div class="tableEditing">
-
       <div id="SectionTitles1" style="width:1100px;">DNA Ligation with T4 DNA Ligase
+
       <div id="SectionTitles1" style="width:1100px;">Fragments Ligation
         </h1>
         </h1>
         <table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
         <table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
Line 627: Line 627:
         </table>
         </table>
       </div>
       </div>
-
       <div id="SectionTitles2" style="width:1100px;">DNA Ligation with Gibson Assemble
+
       <div id="SectionTitles2" style="width:1100px;">DNA Ligation with Gibson Assembly
         </h1>
         </h1>
         <table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
         <table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
Line 660: Line 660:
         </table>
         </table>
       </div>
       </div>
-
       <div id="SectionTitles3" style="width:1100px;">Double Digestion of DNA
+
       <div id="SectionTitles3" style="width:1100px;">Fragment Digestion
         </h1>
         </h1>
         <table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
         <table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
Line 693: Line 693:
         </table>
         </table>
       </div>
       </div>
-
       <div id="SectionTitles4" style="width:1100px;">PCR Protocol for KOD-Plus-Neo
+
       <div id="SectionTitles4" style="width:1100px;">PCR Amplication Protocol for KOD-Plus-Neo
         </h1>
         </h1>
         <table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
         <table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
Line 781: Line 781:
         </table>
         </table>
       </div>
       </div>
-
       <div id="SectionTitles6" style="width:1100px;">Fusion PCR with KOD-Plus-Neo
+
       <div id="SectionTitles6" style="width:1100px;">Fusion PCR Amplication
         </h1>
         </h1>
       <p id="underTitle">Each template will be diluted by the number of moles into 2-10ng/µl.</p>
       <p id="underTitle">Each template will be diluted by the number of moles into 2-10ng/µl.</p>
Line 874: Line 874:
         </table>
         </table>
         </div>
         </div>
-
       <div id="SectionTitles8" style="width:1100px;">Colony PCR with Taq DNA Polymerase
+
       <div id="SectionTitles8" style="width:1100px;">Colony PCR
         </h1>
         </h1>
         <table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
         <table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
Line 959: Line 959:
     </div>
     </div>
     <div class="textEditingArea" >
     <div class="textEditingArea" >
-
       <h1 class="textEditingTitle" style="width: 1100px">E. coli Calcium Chloride Competent Cell Protocol</br>
+
       <h1 class="textEditingTitle" style="width: 1100px">E. coli Transformation</br>
-
         </h1><p class="textEditingstyle">1)Streak E.coli cells (DH5α) on an LB plate, (BL21(DE3)LysS cells on LB plate + 25 mg/ml chloramphenicol);<br>
+
         </h1><p class="textEditingstyle">1)Streak E.coli cells (DH5α) on an LB plate, (BL21 (DE3) LysS cells on LB plate + 25 mg/ml chloramphenicol);<br>
           2) Allow cells to grow at 37℃ overnight;<br>
           2) Allow cells to grow at 37℃ overnight;<br>
           3)Place one colony in 10 ml LB media (+ antibiotic selection if necessary), grow overnight at 37℃;<br>
           3)Place one colony in 10 ml LB media (+ antibiotic selection if necessary), grow overnight at 37℃;<br>
Line 978: Line 978:
           (A) E. coli cells from the control tube without DNA in step 12 above are plated on selective medium and nonselective medium. The first plating ensures that the selective medium is working properly since no growth should be observed. The second plating provides the number of viable cells in the absence of selective medium. <br>
           (A) E. coli cells from the control tube without DNA in step 12 above are plated on selective medium and nonselective medium. The first plating ensures that the selective medium is working properly since no growth should be observed. The second plating provides the number of viable cells in the absence of selective medium. <br>
           (B) E. coli cells being tested for competency are plated on LB agar containing ampicillin (50 mg/ml final concentration) to ensure that the transformation efficiency has not decreased over time due to storage.<br>
           (B) E. coli cells being tested for competency are plated on LB agar containing ampicillin (50 mg/ml final concentration) to ensure that the transformation efficiency has not decreased over time due to storage.<br>
-
           17) Incubate all plates overnight at 37℃ (agar side up); <br>
+
           17) Incubate all plates overnight at 37℃.<br>
           18) Count the number of colonies.<br>
           18) Count the number of colonies.<br>
         </p>
         </p>
-
<h1 class="textEditingTitle" style="width: 1100px">Agrobacterium tumefacien EHA105 Mediated Transformation with Freeze-thawing Steps</br></h1>
+
<h1 class="textEditingTitle" style="width: 1100px">A.tume Transformation</br></h1>
         <p class="textEditingstyle">
         <p class="textEditingstyle">
-
(1)Have 0.5~1 g plasmid DNA into 100  L competent cells, on ice for 30 min;<br>
+
1)Have 0.5~1 g plasmid DNA into 100  L competent cells, on ice for 30 min;<br>
-
(2)Frozen in liquid nitrogen for 5 min, grow at 37 C for 5 min, on ice for 2 min;<br>
+
2)Frozen in liquid nitrogen for 5 min, grow at 37 C for 5 min, on ice for 2 min;<br>
-
(3)Pour in 1000 LYEB, 200 rpm, grow at 28℃ for 2~3 h;<br>
+
3)Pour in 1000 LYEB, 200 rpm, grow at 28℃ for 2~3 h;<br>
-
(4)6000rpm,2min. Suspend collected bacteria with 100µl YEB and evenly coat that at a YEB medium. (125 mg/L Sm or 50 mg/L rif, and 50 mg/L Kan included);<br>
+
4)6000rpm,2min. Suspend collected bacteria with 100µl YEB and evenly coat that at a YEB medium. (125 mg/L Sm or 50 mg/L rif, and 50 mg/L Kan included);<br>
-
(5)Grow upside down at 28℃, for 48h;<br>
+
5)Grow upside down at 28℃, for 48h;<br>
-
(6)Pick positive clones and grow them in LB medium with antibiotic at 28℃ for 48h;<br>
+
6)Pick positive clones and grow them in LB medium with antibiotic at 28℃ for 48h;<br>
-
(7)Inject to LB medium in flasks by the day of transformation, in the rate of 1:50. Grow to OD600 = 0.5. Ready to infect tobacco leaf discs.<br>
+
7)Inject to LB medium in flasks by the day of transformation, in the rate of 1:50. Grow to OD600 = 0.5. Ready to infect tobacco leaf discs.<br>
</p>
</p>
-
<h1 class="textEditingTitle" style="width:1100px">Agrobacterium-mediated Genetic Transformation to Tobacco </br></h1>
+
<h1 class="textEditingTitle" style="width:1100px">Agrobacterium-mediated Tobacco Transformation</br></h1>
         <p class="textEditingstyle">Tobacco was transformed essentially by following the leaf disk co-cultivation protocol of Horsch et al <i>(McCormick, Niedermeyer et al. 1986)</i>. Co-cultivation was initiated by dipping leaf disks in an Agrobacterium suspension, blotting them on sterile tissue paper, and incubating them for 2 d on MS medium <i>(Murashige and Skoog 1962)</i>  containing naphthalene acetic acid (NAA 0.1mg/L), 6-Benzylaminopurine (6-BA,2.0mg/L). Cefotaxime sodium (Cef) was included in the medium (500mg/L) to inhibit Agrobacterium growth. The leaf disks were then transferred onto a medium containing antibiotics for transgenic plant selection(kanamycin, 50 mg/L), and NAA (0.1 mg/L), 6-BA (2.0 mg/L), Cef (500mg/L). And incubate them for 1 month on the medium above. At last, cut off the bud from the callus, put the buds into the mudium containing NAA (0.1mg/L), Cef (500mg/L) and kanamycin (25 mg/L).
         <p class="textEditingstyle">Tobacco was transformed essentially by following the leaf disk co-cultivation protocol of Horsch et al <i>(McCormick, Niedermeyer et al. 1986)</i>. Co-cultivation was initiated by dipping leaf disks in an Agrobacterium suspension, blotting them on sterile tissue paper, and incubating them for 2 d on MS medium <i>(Murashige and Skoog 1962)</i>  containing naphthalene acetic acid (NAA 0.1mg/L), 6-Benzylaminopurine (6-BA,2.0mg/L). Cefotaxime sodium (Cef) was included in the medium (500mg/L) to inhibit Agrobacterium growth. The leaf disks were then transferred onto a medium containing antibiotics for transgenic plant selection(kanamycin, 50 mg/L), and NAA (0.1 mg/L), 6-BA (2.0 mg/L), Cef (500mg/L). And incubate them for 1 month on the medium above. At last, cut off the bud from the callus, put the buds into the mudium containing NAA (0.1mg/L), Cef (500mg/L) and kanamycin (25 mg/L).
Line 1,024: Line 1,024:
  <p id="references"><b>References</b><br>
  <p id="references"><b>References</b><br>
-
McCormick, S., J. Niedermeyer, J. Fry, A. Barnason, R. Horsch and R. Fraley (1986). "Leaf disc transformation of cultivated tomato (L. esculentum) using Agrobacterium tumefaciens." <i>Plant Cell Rep</i> 5(2): 81-84.<br>
+
<i>McCormick, S., J. Niedermeyer, J. Fry, A. Barnason, R. Horsch and R. Fraley (1986). "Leaf disc transformation of cultivated tomato (L. esculentum) using Agrobacterium tumefaciens."Plant Cell Rep 5(2): 81-84.<br>
-
Chen, L. M., H. Yurimoto, K. Z. Li, I. Orita, M. Akita, N. Kato, Y. Sakai and K. Izui (2010). "Assimilation of formaldehyde in transgenic plants due to the introduction of the bacterial ribulose monophosphate pathway genes." <i>Biosci Biotechnol Biochem</i> 74(3): 627-635.<br>
+
Chen, L. M., H. Yurimoto, K. Z. Li, I. Orita, M. Akita, N. Kato, Y. Sakai and K. Izui (2010). "Assimilation of formaldehyde in transgenic plants due to the introduction of the bacterial ribulose monophosphate pathway genes." Biosci Biotechnol Biochem</i> 74(3): 627-635.</i><br>
</p>
</p>

Revision as of 13:02, 17 October 2014

UESTC-China