Team:UESTC-China/yanTeam

From 2014.igem.org

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<a href="https://2014.igem.org/Team:UESTC-China"><p>Home</p></a>
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<a href="https://2014.igem.org/Team:UESTC-China/Team"><li>Members</li></a>
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<a href="https://2014.igem.org/Team:UESTC-China/Team"><li>Members</li></a>
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<a href="https://2014.igem.org/Team:UESTC-China/Attribution"><li>Attribution</li></a>
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<a href="https://2014.igem.org/Team:UESTC-China/Attribution"><li>Attribution</li></a>
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<a href="https://igem.org/Team.cgi?year=2014&team_name=UESTC-China"><li>Team Profile</li></a>
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<a href="https://igem.org/Team.cgi?year=2014&team_name=UESTC-China"><li>Team Profile</li></a>
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<a href="https://2014.igem.org/Team:UESTC-China/Notebook"><li>Notebook</li></a>
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<a href="https://2014.igem.org/Team:UESTC-China/Notebook"><li>Notebook</li></a>
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<a href="https://2014.igem.org/Team:UESTC-China/Project"><li>Overview</li></a>
<a href="https://2014.igem.org/Team:UESTC-China/Project"><li>Overview</li></a>
<a href="https://2014.igem.org/Team:UESTC-China/Design"><li>Design</li></a>
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<a href="https://2014.igem.org/Team:UESTC-China/Judingform"><li>Judging Criteria</li></a>
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<a href="https://2014.igem.org/Team:UESTC-China/Modeling1"><li>HPS/PHI</li></a>
<a href="https://2014.igem.org/Team:UESTC-China/Modeling1"><li>HPS/PHI</li></a>
<a href="https://2014.igem.org/Team:UESTC-China/Modeling2"><li>FALDH/FDH</li></a>
<a href="https://2014.igem.org/Team:UESTC-China/Modeling2"><li>FALDH/FDH</li></a>
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<a href="https://2014.igem.org/Team:UESTC-China/Protocol"><li>Protocol</li></a>
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<a href="https://2014.igem.org/Team:UESTC-China/Lecture.html"><li>Lecture</li></a>
<a href="https://2014.igem.org/Team:UESTC-China/Communication.html"><li>Communication</li></a>
<a href="https://2014.igem.org/Team:UESTC-China/Communication.html"><li>Communication</li></a>
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<a href="https://2014.igem.org/Team:UESTC-China/Art"><li>Art</li></a>
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<p>Safety</p>
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<a href="https://2014.igem.org/Team:UESTC-China/Safety"><li>Safety</li></a>
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<p style="color:#1b1b1b;">In order to further increase the plant ability of formaldehyde uptake and metabolism by synthesis biology technology, we choosed four enzyme-coding genes related to formaldehyde metabolic pathways from microorganism and plant: they are 3-hexulose-6-phosphate (HPS), 6-phospho-3-hexuloisomerase (PHI), formaldehyde dehydrogenase (FALDH) and formate-dehydrogenase (FDH). These genes are transformed into plants and will promote formaldehyde metabolism. For security reasons, we also induce <i>AdCP</i> gene into our plans because of its capability to lead to pollen abortion. At the same time, chloroplast transformation is taken into consideration to avoid gene flow and improve gene expression.
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</p><br/>
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  <h1 class="SectionTitles" style="width:1100px;">HPS-PHI</h1>
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<p style="color:#1b1b1b;">
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<br/>
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The ribulose monophosphate (RuMP) pathway is one of the formaldehyde-fixation pathways found in microorganisms called methylotrophs, which utilize one-carbon compounds as the sole carbon source. The key enzymes of this pathway are 3-hexulose-6-phosphate synthase (HPS), which fixes formaldehyde to D-ribulose-5-phosphate (Ru5P) to produce D-arabino-3-hexulose-6-phosphate (Hu6P), and 6-phospho-3-hexuloisomerase (PHI), which converts Hu6P to fructose 6-phosphate (F6P).The two key enzymes work in chloroplast both.We will use fusion expression to conduct heterologous expression in tobacco <i>( Li-mei Chen et al,2010)</i>.
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<br/><br/></p>
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<div align="center"><img style="width:50% ;" src="https://static.igem.org/mediawiki/2014/3/3f/Regu1.png" naptha_cursor="text">
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<p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:1000px; color:#1b1b1b;">
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<strong>Fig.1</strong>
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Schematic Representation of the Bacterial RuMP Pathway and the Plant Calvin-Benson Cycle. HPS and PHI denote 3-hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase respectively. The abbreviations for several sugar phosphates are as follows: Ru5P, ribulose 5-phosphate; Hu6P, hexulose 6-phosphate; F6P, fructose 6-phosphate; FBP, fructose 1,6-bisphosphate; RuBP, ribulose1, 5-bisphosphate; 3-PGA, 3-phosphoglyce-rate. The other metabolites in the pathway are symbolized merely by their carbon numbers for simplicity <i></i>.
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<a href="https://2014.igem.org/Team:UESTC-China/Safety"><li>Safety</li></a>
+
-
</ul>
+
-
  </div>
+
  <h1 class="SectionTitles" style="width:1100px;">FALDH</h1>
 +
<p style="color:#1b1b1b;">
 +
<br/>
 +
The glutathione-dependent formaldehyde dehydrogenase (FALDH) plays a key role in formaldehyde metabolism (Fig.3). FALDH is identified as an enzyme expressed in the cytoplasm. If we make <i>FALDH</i> over-express in plants, we can enhance plants’ tolerance to formaldehyde and increase the ability of plants to absorb formaldehyde. In the process of metabolism of formaldehyde, the formaldehyde may first combined with glutathione (GSH) to form the product of S-hydroxymethyl glutathione (HM-GSH), then FALDH in cytoplasm will catalyzes the formation of a S-formyl glutathione (F-GSH). Next the F-GSH will be hydrolyzed to formate (HCOOH) and GSH by S-formyl glutathione hydrolase (FGH).
 +
<br/><br/></p>
 +
<div align="center"><img style="width:40% ;" src="https://static.igem.org/mediawiki/2014/a/a7/Faldh.jpg">
 +
<p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:1000px; color:#1b1b1b;">
 +
<strong>Fig.2</strong>  a. <img align="top" src="https://static.igem.org/mediawiki/2014/0/04/C13-nmr.gif"> spectra from leaf extracts of transgenic tobacco plant treated with gaseous <img align="top" src="https://static.igem.org/mediawiki/2014/e/e7/H13CHO.gif"> for 2 h. b. <img align="top" src="https://static.igem.org/mediawiki/2014/0/04/C13-nmr.gif"> spectra from leaf extracts of WT treated with gaseous <img align="top" src="https://static.igem.org/mediawiki/2014/e/e7/H13CHO.gif"> for 2 h. c. The extract from WT plant leaves without <img align="top" src="https://static.igem.org/mediawiki/2014/e/e7/H13CHO.gif"> treatment was used to monitor the background <img align="top" src="https://static.igem.org/mediawiki/2014/0/04/C13-nmr.gif"> signal levels <i>(H Nian et al,2013)</i>.
 +
<br>
 +
</p>
</div>
</div>
-
</div>
+
<br/>
-
</div>
+
-
    <div id="middle-photo">
+
  <h1 class="SectionTitles" style="width:1100px;">FDH</h1>
-
<div class="middle-photo-each">
+
<p style="color:#1b1b1b;">
 +
<br/>
 +
Formate dehydrogenase is a mitochondrial-localized NAD-requiring enzyme while the HCOOH is getting into the mitochondrial,FDH will oxidize the formic acid into CO2, and reduce NAD+ to NADH with a high degree of specificity.In our project, the heterologous expression of <i>FDH</i> from arabidopsis thaliana in tobacco was completed.
 +
<br/><br/></p>
 +
<div align="center"><img style="width:50% ;" src="https://static.igem.org/mediawiki/2014/e/e9/Regu2.png">
 +
<p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:1000px; color:#1b1b1b;">
 +
<strong>Fig.3</strong> The abbreviations are as follows: FALDH:glutathione-dependent formaldehyde dehydrogenase; FDH: Formate dehydrogenase; HM-GSH: S-Hydroxymethyl glutathione; Forml-GSH: Formyl glutathione; SMM cycle: Methionine cycle.
 +
<br>
 +
</p>
 +
</div>
 +
<br/>
-
<div id="all">
+
  <h1 class="SectionTitles" style="width:1100px;">Stomatal opening</h1>
-
<div class="container">
+
<p style="color:#1b1b1b;">
-
  <div class="main">
+
<br/>
-
    <ul class="cbp_tmtimeline">
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Stomata are microscopic pores surrounded by two guard cells and play an important role in the uptake of CO2 for photosynthesis. Recent researches revealed that light-induced stomatal opening is mediated by at least three key components: blue light receptor phototropin, plasma membrane H+-ATPase, and plasma membrane inward-rectifying K+ channels. However, Yin Wang, et al (2014) showed that only increasing the amount of H+-ATPase in guard cells had a significant effect on light-induced stomatal opening (Fig. 4). Transgenic Arabidopsis plants by overexpressing H+-ATPase in guard cells exhibited enhanced photosynthesis activity and plant growth. Therefore,in order to strengthen the ability of absorbing formaldehyde, we overexpressed H+-ATPase (AtAHA2) in transgenic tobacco guard cells,resulting in a significant effect on light-induced stomatal opening.
-
      <li>
+
<br/><br/></p>
-
        <time class="cbp_tmtime" datetime="2013-04-10 18:30"><span></span><span>
+
<div align="center"><img style="width:40% ;" src="https://static.igem.org/mediawiki/2014/c/c8/Stoma.png">
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February</span></time>
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<p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:800px; color:#1b1b1b;">
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        <div class="cbp_tmicon cbp_tmicon-phone"></div>
+
<strong>Fig.4</strong> Typical stomata in the epidermis illuminated with light for 30 min (<i>Yin Wang,et al.2014</i>).
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        <div class="cbp_tmlabel">
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<br>
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</p>
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          <p>
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</div>
-
<B>Feb 14</B><br/>
+
<br/>
-
iGEM 2014 registration opens.<br/>
+
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<b>Feb 20</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
Team of iGEM 2014 in UESTC is founded.<br/>
+
-
<b>Feb 21</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
We name our team Green Life;<br/>
+
-
Discuss the direction we will focus on for the iGEM 2014.<br/>
+
-
<b>Feb 24</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
We meet the supervisors Yong Zhang, Xuelian Zheng, Lixia Tang, discussing the direction and acquiring their opinions of our project.<br/>
+
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  </p>
+
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        </div>
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      </li>
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      <li>
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-
        <time class="cbp_tmtime" datetime="2013-04-11 12:04"><span></span><span>
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-
March</span></time>
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-
        <div class="cbp_tmicon cbp_tmicon-screen"></div>
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-
        <div class="cbp_tmlabel">
+
-
         
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          <p>
+
-
<b>March 3</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
We firstly choose plant as our receptor, each member of our team give advices for the details we plan to do, such as which plant to use, tobacco, Arabidopsis or any other plant?<br/>
+
-
<b>March 10</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
We talk with our supervisors and decide to use tobacco as our receptor for its simpleness as model organism.<br/>
+
-
<b>March 17</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
We discuss the project and firstly decide to create a plant which can absorb formaldehyde largely by synthetic biology. And we choose Yasong Cui as our team leader.<br/>
+
-
<b>March 24</b><br/>
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-
Site: West 304 of main building in UESTC<br/>
+
-
Team leader assign task for us;<br/>
+
-
The first phase for our task begins, searching references and designing our logo.<br/>
+
-
<b>March 31</b><br/>
+
-
We registered our team with the name of Green Life;<br/>
+
-
iGEM 2014 registration closes;<br/>
+
-
Team registration fee due.<br/>
+
-
  </p>
+
  <h1 class="SectionTitles" style="width:1100px;">Biosafty</h1>
-
</div>
+
<p style="color:#1b1b1b;">
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      </li>
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<br/>
-
      <li>
+
In order to promise biology safety, we use male sterility systems which can be used as a biological safety containment to prevent horizontal transgene flow. Pawan Shukla et al (2014) has used a plant pathogen-induced gene, cysteine protease for inducing male sterility. This gene was identified in the wild peanut, <i>Arachis diogoi</i> differentially expressed when it was challenged with the late leaf spot pathogen, <i>Phaeoisariopsis personata</i>. <i>Arachis diogoi</i> cysteine protease (AdCP) was expressed under the strong tapetum-specific promoter (TA29) and tobacco transformants were generated. Morphological and histological analysis of <i>AdCP</i> transgenic plants showed ablated tapetum and complete pollen abortion.
-
        <time class="cbp_tmtime" datetime="2013-04-13 05:36"><span></span><span>
+
-
April</span></time>
+
-
        <div class="cbp_tmicon cbp_tmicon-mail"></div>
+
-
        <div class="cbp_tmlabel">
+
-
         
+
-
          <p>
+
-
<b>April 9</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
Group meeting for the references and information we have researched last few days. Team leader Yasong Cui and Jingyao Lireport the key enzymes through the formaldehyde metabolic pathways. HPS, PHI are critical enzymes of RuMP pathway in formaldehyde assimilation. The references show that the transformation method is chloroplast transformation. The crucial enzyme in amplifying stomas of foliage.<br/>
+
-
<b>April 13</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
Group meeting for the reference reading.<br/>
+
-
Mingyuan Wang report one gene (AdCP) of pollen sterility;<br/>
+
-
Jiao He report FDH which can amplify metabolic pathway in plant;<br/>
+
-
Yasong Cui report gene AHA2 which can amplify stoma of foliage.<br/>
+
-
<b>April 16</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
Group meeting for the wiki constructing;<br/>
+
-
The responsible person of wiki, Zhiqiang Yan assign task for the rest.<br/>
+
-
<b>April 20</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
Jie Li report Faldh which can amplify metabolic pathway in plant;<br/>
+
-
Rui Liu report some information about HPS, PHI;<br/>
+
-
Yasong Cui report some information about AHA2.<br/>
+
-
<b>April 23</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
Vector construction and confirmation of the gene (HPS, PHI, FDH, Faldh, AHA2, AdCP) being used in our project.<br/>
+
-
<b>April 23</b><br/>
+
-
Site: online<br/>
+
-
We exchange the team name Green Life into UESTC-China.<br/>
+
-
<b>April 30</b><br/>
+
-
Site: The seventh middle school in Chengdu.<br/>
+
-
We introduce the concept and racing type of iGEM to the students in the seventh middle school who were the best students in Sichuan province.<br/>
+
-
<b>April 30</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
We talk about the PrbcS-3C promoter sequence and the gene sequence of transit peptide of chloroplast.<br/>
+
-
  </p>
+
<br/><br/></p>
-
        </div>
+
-
      </li>
+
-
      <li>
+
-
        <time class="cbp_tmtime" datetime="2013-04-15 13:15"><span></span><span>
+
-
May </span></time>
+
-
        <div class="cbp_tmicon cbp_tmicon-phone"></div>
+
-
        <div class="cbp_tmlabel">
+
-
       
+
-
          <p>
+
-
DNA Distribution Kit sent to teams<br/>
+
-
<b>May 01</b><br/>
+
-
iGEM 2014 Late registration closes<br/>
+
-
<b>May 3</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
Decisionon the backbone vector.<br/>
+
-
The backbone named pXZY006 was proffered by one of our advisor Zhengyang Xie. And we designate it piGEM001.<br/>
+
-
Weixin Liu finds some chloroplast and cytoplasm transit peptide from Uniprot database.<br/>
+
-
<b>May 7</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
Take a group meeting and design the vectors we plan to use.<br/>
+
-
<b>May 14</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
Group meeting.<br/>
+
-
We discussed some details in the designing of vector constructing;<br/>
+
-
At the end of the meeting, we started our experiments.<br/>
+
-
<b>May 19</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
We extract pXZY006 plasmid from bacterium culture using TIANGEN kit.<br/>
+
-
Using SpeⅠand HpaⅠto do the double digestion of pXZY006 and F01 (contains HPS ) and do the ligation using T4 DNA ligase.<br/>
+
-
<b>May 22</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Do the transformation in competent recipient E.coli cell.<br/>
+
-
<b>May 23</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Repeat the experiment we do in May 19 and May 22 for the outcome is not that satisfactory.<br/>
+
-
Also we do not use the T4 ligase to do the ligation but by Gibson assembly.<br/>
+
-
<b>May 28</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Do the colony PCR to testify if the F01 has ligated to pXZY006.<br/>
+
-
And it comes out with positive clones, so the vector piGEM001 has been successfully constructed.<br/>
+
-
<b>May 29</b><br/>
+
-
Site: West 304 of main building in UESTC<br/>
+
-
Group meeting;<br/>
+
-
Decide to build the second vector piGEM002.<br/>
+
-
Ligate F05, F02, and F03 to piGEM001 to construct piGEM002;<br/>
+
-
Ligate F06, F07 to piGEM002 to construct piGEM011.<br/>
+
-
<b>May 30</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Ligate F06 and F07 to iGEM001.<br/>
+
-
<b>May 31</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Do the transformation using heat shock.<br/>
+
-
The outcome is satisfactory that there is no clone in control group and thirteen clones in experimental group.<br/>
+
-
  </p>
+
<div align="center"><img style="width:50% ;" src="https://static.igem.org/mediawiki/2014/1/1c/New_fig5.png">
-
        </div>
+
<p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:1000px; color:#1b1b1b;">
-
      </li>
+
<strong>Fig.5</strong> Pollen germination of untransformed control plant and sterile transgenic plantsin vitro. Pollen grains were germinated on sucrose-boric acid medium and over 500 pollen grains were observed. a. Untansformed control plant pollen, b. Sterile pollen.Scale bar 25 μm (<i>Pawan Shukla et al 2014</i>).
-
      <li>
+
<br>
-
        <time class="cbp_tmtime" datetime="2013-04-15 13:15"><span></span><span>
+
</p>
-
June  </span></time>
+
</div>
-
        <div class="cbp_tmicon cbp_tmicon-phone"></div>
+
<br/>
-
        <div class="cbp_tmlabel">
+
  <h1 class="SectionTitles" style="width:1100px;">Vectors</h1>
-
         
+
<p style="color:#1b1b1b;">
-
          <p>
+
<br/>
-
<b>June 5</b><br/>
+
The production of HPS, PHI, and FDH are located in chloroplast, while the production of <i>FALDH</i> are located in cytoplasm. We used chloroplast transit peptides to locate these productions of genes. So we constructed different vectors with and without transit peptide. We hope to compare the ability of metabolizing formaldehyde of transgenic tobacco between different transgenic lines. We planned to constructed 11 vectors (Fig. 6), including two backbones, six mono-gene expression vectors and three multi-gene expression vectors (Fig. 7). piGEM003, piGEM004 and piGEM005 are individual mono-gene expression vectors with transit peptides, while piGEM006, piGEM006, piGEM008 are individual multi-gene expression vectors without transit peptides. piGEM009 is a multi-gene expression vector without any transit peptides, while piGEM011 is a multi-gene expression vector with three peptides. piGEM010 is a multi-gene expression vector with two transit peptides.
-
Site: West 121 of main building in UESTC<br/>
+
-
Do the colony PCR to testify if the F06 and F07 have ligated to piGEM001.<br/>
+
<br/><br/></p>
-
This ligation fail due to the outcome of colony PCR.<br/>
+
<div align="center"><img style="width:70% ;" src="https://static.igem.org/mediawiki/2014/2/22/Dd.png"><br><br>
-
<b>June 6</b><br/>
+
<p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:450px; color:#1b1b1b;">
-
Site: West 121 of main building in UESTC<br/>
+
<strong>Fig.6</strong> The procedure we constructed our vectors.
-
Repeating the experiment we did on May 31.<br/>  
+
<br>
-
<b>June 7</b><br/>
+
</p>
-
Site: West 121 of main building in UESTC<br/>
+
</div>
-
Do the transformation and colony PCR.<br/>  
+
<br/><br/><br/>
-
The outcome of colony PCR still demonstrate we fail again.<br/>
+
-
<b>June 8-13</b><br/>
+
<div align="center"><img width="70%" src="https://static.igem.org/mediawiki/2014/8/8f/Nvector.png">
-
Site: West 121 of main building in UESTC<br/>
+
  <p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:400px; color:#1b1b1b;">
-
We do the ligation and transformation repeatedly, asking help from our advisors, finally we got the right outcome of piGEM011 (not the originally piGEM011 we planned to construct, used to be F06+F07+piGEM002 and now is F06+F07+piGEM001)<br/>
+
<strong>Fig.7</strong> Schematic of vectors we constructed
-
<b>June 14</b><br/>
+
<br>
-
Site: West 121 of main building in UESTC<br/>
+
</p>
-
We ligate F02, F03, and F05 but fair.<br/>
+
</div>
-
<b>June 15</b><br/>
+
<br/>
-
Site: West 121 of main building in UESTC<br/>
+
<h1 class="SectionTitles" style="width:1100px;">References</h1>
-
We ligate F02, F03, and F05 but fair.<br/>
+
<p style="position:relative; left:0px; padding:15 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: Italic; text-align:justify; color:#1b1b1b;">
-
<b>June 16</b><br/>
+
Chen, L. M., H. Yurimoto, K. Z. Li, I. Orita, M. Akita, N. Kato, Y. Sakai and K. Izui (2010). "Assimilation of formaldehyde in transgenic plants due to the introduction of the bacterial ribulose monophosphate pathway genes." Biosci Biotechnol Biochem 74(3): 627-635.<br/>
-
Site: The area before Sun Shine dining hall in UESTC<br/>
+
Nian, H., Q. Meng, W. Zhang and L. Chen (2013). "Overexpression of the formaldehyde dehydrogenase gene from Brevibacillus brevis to enhance formaldehyde tolerance and detoxification of tobacco." Appl Biochem Biotechnol 169(1): 170-180.<br/>
-
We made a knowledge quiz which contains a few questions concerning iGEM or synthetic biology to expand people's horizon.<br/>
+
Shukla, P., N. K. Singh, D. Kumar, S. Vijayan, I. Ahmed and P. B. Kirti (2014). "Expression of a pathogen-induced cysteine protease (AdCP) in tapetum results in male sterility in transgenic tobacco." Funct Integr Genomics 14(2): 307-317.<br/>
-
<b>June 19</b><br/>
+
Wang, Y., K. Noguchi, N. Ono, S. Inoue, I. Terashima and T. Kinoshita (2014). "Overexpression of plasma membrane H+-ATPase in guard cells promotes light-induced stomatal opening and enhances plant growth." Proc Natl Acad Sci U S A 111(1): 533-538.
-
Open Office Hours -- ask safety questions, meet other iGEMers!<br/>
+
</p><br/>
-
<b>June 23</b><br/>
+
-
About our Lab form due<br/>
+
-
<b>June 17-30</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
We do the multiple ligation of F02, F03, and F05 repeatedly for changing the parameters in experiments but fair.<br/>
+
-
  </p>
+
</div>
-
        </div>
+
</div>
-
      </li>
+
<div class="middle-photo-each">
-
      <li>
+
<div class="middle-content" style="height: 0;"></div>
-
        <time class="cbp_tmtime" datetime="2013-04-15 13:15"><span></span><span>
+
</div>
-
July  </span></time>
+
-
        <div class="cbp_tmicon cbp_tmicon-phone"></div>
+
-
        <div class="cbp_tmlabel">
+
-
       
+
-
          <p>
+
-
<b>July 1-16</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
We do the multiple ligation of F02, F03, and F05 repeatedly for changing the parameters in experiments but fair. And finally we abandon F03 and F05, ‘cause no matter how we improve the criteria of our experiments we still get the fail result. But we still add F02 into piGEM001 to construct the backbone.<br/>
+
-
<b>July 13</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Start to construct DNA samples in pSB1C3.<br/>
+
-
<b>July 16</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
We ligate F02 to piGEM001 as the new vector piGEM002.<br/>
+
-
<b>July 21</b><br/>
+
-
Preliminary safety forms due.<br/>
+
-
<b>July 23</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
<b>Group meeting;</b><br/>
+
-
We decide to construct the rest vectors piGEM003, piGEM004,piGEM005, piGEM006, piGEM007, piGEM008, piGEM009, piGEM010.<br/>
+
-
<b>July 25</b><br/>
+
-
Track selection due;<br/>
+
-
Site: West 121 and west 111 of main building in UESTC<br/>
+
-
We communicate with the students from SCU. We exchange our project to each other and make a long talk about what we have done during the last month.<br/>
+
-
<b>July 26</b><br/>
+
-
Site: West 121 and west 111 of main building in UESTC<br/>
+
-
From July 25th,we start to do the transformation part. That really requires large volume of work. Four members of our team do the most of the work,and other members also help a lot.<br/>
+
-
<b>July 27</b><br/>
+
-
Site: Before the main building of UESTC<br/>
+
-
The members of our team gather and take a photo.<br/>
+
-
<b>July 28</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Start to construct the vector piGEM003, piGEM004, piGEM005, piGEM006, piGEM008, piGEM010.<br/>
+
-
<b>July 29</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Design a questionnaire about iGEM and our project for constructing a plant which can highly absorb formaldehyde in the method of synthetic biology.<br/>
+
-
<b>July 28-31</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Go on constructing the vector piGEM003, piGEM004, piGEM005, piGEM006, piGEM008, piGEM010.<br/>
+
-
Start to construct piGEM007.<br/>
+
-
 
+
-
  </p>
+
-
        </div>
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-
      </li>
+
-
      <li>
+
-
        <time class="cbp_tmtime" datetime="2013-04-17 12:11"><span></span><span>
+
-
August </span></time>
+
-
        <div class="cbp_tmicon cbp_tmicon-earth"></div>
+
-
        <div class="cbp_tmlabel">
+
-
       
+
-
        <p>
+
-
<b>August 2</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Start to construct the vector piGEM009.<br/>
+
-
Do the colony PCR in the eight vectors to detect if the colony is positive or not.<br/>
+
-
<b>August 3</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Amplify 6*A-MASS, GSG-P2A, GSG-T2A, GSG-F2A by PCR.<br/>
+
-
<b>August 5</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Amplify AtAHA2 by PCR.<br/>
+
-
<b>August 8</b><br/>
+
-
Site: The playground of UESTC and the opening area in front of supermarket<br/>
+
-
We go to the playground and do the research for our questionnaire.<br/>
+
-
<b>August 11</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
All the vector (piGEM003-010) we planned to build has finished.<br/>
+
-
<b>August 15</b><br/>
+
-
Team project descriptions due.<br/>
+
-
<b>August 30</b><br/>
+
-
Project titles and abstracts due.<br/>
+
-
<b>August 18</b><br/>
+
-
Site: West 206 of main building in UESTC<br/>
+
-
During the summer vacation, besides communicating with the students in SCU, there is another activity which worth a notice, our principal came to our laboratory and gave us a speech, which totally stimulated us to work harder and excited. The principal told us do not be scared to have the new idea, ‘cause the study we received today is to make us to speak out a new idea no matter it is wizard or not.<br/>
+
-
<b>August 20</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
For about two months work, our wiki has its fundamental appearance.<br/>
+
-
<b>August 27</b><br/>
+
-
Site: West 304of main building in UESTC<br/>
+
-
Group meeting for the progress of our project.<br/>
+
-
<b>August 30</b><br/>
+
-
Site: Another campus named Qingshui river of UESTC<br/>
+
-
Before the new term begins, we go to another campus which is bigger than the campus we stayed in of UESTC to do the research. ‘Cause the people from different places gathered in our school this day for accompanying their children to go to school.<br/>
+
-
+
-
</p>
+
</div>
</div>
-
      </li>
+
</div>
-
      <li>
+
 
-
        <time class="cbp_tmtime" datetime="2013-04-17 12:11"><span></span><span>September</span></time>
+
<div id="footer">
-
        <div class="cbp_tmicon cbp_tmicon-screen"></div>
+
-
        <div class="cbp_tmlabel">
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</div>
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          <p>
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-
<b>September 1 to now</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
On September 1st, when the eighth leaves of the first batch of tobacco seedlings appear,we start the formal experiments of formaldehyde detection. Before that,some pre-tests are made based on some corresponding references. Finding the right amount of formaldehyde is the hardest part. By means of a series of experiments,we determine the final protocol which includes the qualitative detection and quantitative detection. From the experimental results,we can draw the conclusion that our super plants have remarkable formaldehyde tolerance and can dramatically reduce the concentration of formaldehyde in the air.<br/>
+
-
<b>September 1</b><br/>
+
-
Final safety forms due.<br/>
+
-
<b>September 5</b><br/>
+
-
Giant Jamboree attendance fee due at 11:59PM EDT;<br/>
+
-
Team rosters due.<br/>
+
-
<b>September 6</b><br/>
+
-
Site: West 213 of main building in UESTC<br/>
+
-
Extract the DNA and RNA from transgenosis plant, testifying.<br/>
+
-
Team rosters due.<br/>
+
-
<b>September 7-15</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Sum up the information of the questionnaire, and draw up the statistics.<br/>
+
-
<b>September 20-30</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
Analyze the statistics we get from the questionnaire. And start to consider how to present the conclusions on the wiki.<br/>
+
-
<b>September 24</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
The DNA samples in pSB1C3 have been completely finished.<br/>
+
-
<b>September 25</b><br/>
+
-
Site: West 121 of main building in UESTC<br/>
+
-
In the beginning of this new semester, our school held a science and culture activity. We caught this opportunity to advertise iGEM and our ultimate products, the plants which can absorb formaldehyde. The leaders and many teachers in our school also participated this activity. We displayed the plants which already owned the several genes which worked in the absorption of formaldehyde, to the people who visited our project. And the people visited our plant all said they want to owe one if there is already market available.<br/>
+
-
  </p>
 
-
</div>
 
-
      </li>
 
-
      <li>
 
-
        <time class="cbp_tmtime" datetime="2013-04-18 09:56"><span></span><span>October</span></time>
 
-
        <div class="cbp_tmicon cbp_tmicon-phone"></div>
 
-
        <div class="cbp_tmlabel">
 
-
         
 
-
          <p>
 
-
<b>October 1</b><br/>
 
-
Site: West 121 and west 111 of main building in UESTC<br/>
 
-
Examine the formaldehyde tolerance of the transgenosis plant and wild type plant.<br/>
 
-
<b>October 5</b><br/>
 
-
Site: West 121 and west 111 of main building in UESTC<br/>
 
-
Examine the formaldehyde tolerance of the transgenosis plant and wild type plant.<br/>
 
-
<b>October 3-8</b><br/>
 
-
Site: West 121 and west 111 of main building in UESTC<br/>
 
-
Improve the outcomes of Questionnaire researching.<br/>
 
-
<b>October 3-8</b><br/>
 
-
Site: West 121 and west 111 of main building in UESTC<br/>
 
-
Keep on constructing our wiki and doing the examination of our super plant’s tolerance of formaldehyde.<br/>
 
-
<b>October 9 to now</b><br/>
 
-
Site: West 121 and west 111 of main building in UESTC<br/>
 
-
Keep on constructing our wiki, doing the examination of our super plant’s tolerance of formaldehyde and extract DNA and RNA from transgenosis tobacco.<br/>
 
-
<b>October 10</b><br/>
 
-
Site: West 121 and west 111 of main building in UESTC<br/>
 
-
We mimic the iGEM jamboree spot and to present our project to the teachers.<br/>
 
-
<b>Up to October 17</b><br/>
 
-
We keep on constructing our wiki, examining the writing error and lack of standardization and replenishing the picture and results of our project.<br/>
 
-
<b>Up to now</b><br/>
 
-
We keep on replenish our experiments, and examining the formaldehyde tolerance of transgenosis plant. And continue to picture the differences of formaldehyde tolerance in transgenosis and wild type plant.<br/>
 
-
 
 
-
          </p>
 
-
</div>
 
-
      </li>
 
-
    </ul>
 
-
  </div>
 
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</div>
 
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Revision as of 12:37, 17 October 2014

UESTC-China