Team:Hong Kong HKUST/riboregulator/regulatory RNAs catalog

<p><font color="white"> Over the years, the number of regulatory RNAs in Part Registry has steadily increased over time and many has been made available to end users. Based on different mode actions and natures of regulatory RNAs, they can be grouped into different categories. However, the Part Registry currently does not have a catalog page, categorizing methods or guidelines to organize and curate existing regulatory RNAs. Some of them are grouped under type &quot;RNA&quot;, while others are not. This is not useful for looking up and utilizing them.Over the years, the number of non-coding RNAs in Part Registry has increased steadily over time and many have been made available to end users. More than 400 entries in the Part Registry are related to RNA devices (updated 25-12-2014). Based on different mode of actions and natures of non-coding RNAs (ncRNAs), they can be grouped under different categories. However, the Part Registry currently does not have a catalog page, categorizing methods or guidelines to organize and curate existing ncRNAs. Some of them are simply grouped under type "RNA", while others are not. This is not useful for looking up and utilizing them. For example, BBa_K145013, which is a part for antisense LuxI, could be used to add an extra layer of control to the widely utilized quorum sensing Lux pathway but it has not been extensively reused. It is likely that Part Registry users are unaware of its existence because there has yet to be an information hub for ncRNA.  

We would like to solve this problem by designing a list of category tags as well as a guideline, so that automated display of non-coding RNAs by the <parttable> function can be facilitated. By doing so, we hope that we can assist other users to find and use those parts efficiently. Ultimately we want to facilitate the implementation of the philosophy of Part Registry, which is to get and give (and share), through a better organization of ncRNA parts in the registry.

This page was written in compliance with Part Registry's format for general Catalog Pages. Currently, the information is uploaded manually because we have yet to submit our suggestions to iGEM HQ. Upon approval, we will tag existing regulatory RNAs and complete the page. Being part of the cross-cohort "Project Riboregulator", the page is far from complete and is expected to take shape by Summer 2015. We welcome and encourage constant update and adoption of this page in the future.</font>

</p>

<div class='content_1'><h3>ncRNA devices by YEAR</h3>

                                          To use this catalog, please select the desired type of ncRNA in the following box.  

                                          </p>

<p>

<select id="multiple">

  <option>RNA_aptamer</option>

<option>aptamer</option>

  <option>CRISPR</option>

<option>RNA_OUT</option>

<option>RNA_IN</option>

<option>riboregulator</option>

<option>riboswitch</option>

<option>antisense_RNA</option>

<option>asRNA</option>

<option>RNAi</option>

<option>aptazyme</option>

<option>ribozyme</option>

   <option>pT181</option>

<option>others</option>

<option>complex</option>

  <option>ligand</option>

  <option>target_sequence</option>

</select>

<button type="button" onclick="resettable()">Click to reset</button>

</p>

</p>

<div class = "catalog_table_area">

<table id="result2" class= "catalog_table"><tbody><tr>

<td>YEAR</td>

<td>Team</td>

<td>part number</td>

<td>part name</td>

<td>category 1</td>

<td>category 2</td>

<td>category 3</td>

<td>category 5</td>

<tr>

<td>2005</td>

<td>Berkeley</td>

<td>BBa_J01008</td>

<td>Riboregulator key 1</td>

<td>//RNA/ncRNA/regulation_level/RNA</td>

<td>//RNA/ncRNA/function/regulation</td>

<td>//RNA/ncRNA/nature/riboregulator/trans_activating</td>

<td></td>

<td></td>