Team:UESTC-China/Protocol

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   <div id="SensorEditingArea" class="SensorEditingAreaClass">
   <div id="SensorEditingArea" class="SensorEditingAreaClass">
     <div class="tableEditing">
     <div class="tableEditing">
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<h1 style="color:#1b1b1b; position:relative; left:25px; padding:15 5px; font-size:40px; font-family: calibri, arial, helvetica, sans-serif; font-weight: bold;font-style: Italic; text-align:center; width:1140px;">Protocol</h1>
       <div id="SectionTitles1" style="width:1100px;">Fragments Ligation
       <div id="SectionTitles1" style="width:1100px;">Fragments Ligation
         </h1>
         </h1>
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           <tr>
           <tr>
             <td class="mid">Insert DNA</td>
             <td class="mid">Insert DNA</td>
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             <td class="mid"> the moles of insert DNA to vector DNA is 5:1</td>
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             <td class="mid"> the moles rate of insert DNA to vector DNA is 5:1</td>
           </tr>
           </tr>
           <tr>
           <tr>
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           <tr>
           <tr>
             <td class="mid">Insert DNA </td>
             <td class="mid">Insert DNA </td>
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             <td class="mid"> the moles of insert DNA to vector DNA is 5:1</td>
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             <td class="mid"> the moles rate of insert DNA to vector DNA is 5:1</td>
           </tr>
           </tr>
           <tr>
           <tr>
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           <tr>
           <tr>
             <td class="mid">DNA</td>
             <td class="mid">DNA</td>
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             <td class="mid">1-2ug</td>
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             <td class="mid">1-2µg</td>
           </tr>
           </tr>
           <tr>
           <tr>
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           <tr>
           <tr>
             <td class="mid">10mM dNTPs</td>
             <td class="mid">10mM dNTPs</td>
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             <td class="mid">5ug</td>
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             <td class="mid">5µg</td>
           </tr>
           </tr>
           <tr>
           <tr>
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     </div>
     </div>
     <div class="textEditingArea" >
     <div class="textEditingArea" >
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       <h1 class="textEditingTitle" style="width: 1100px">E. coli Transformation</br>
       <h1 class="textEditingTitle" style="width: 1100px">E. coli Transformation</br>
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         </h1><p class="textEditingstyle">1)Streak E.coli cells (DH5α) on an LB plate, (BL21 (DE3) LysS cells on LB plate + 25 mg/ml chloramphenicol);<br>
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         </h1><p class="textEditingstyle">1)Streak <i>E.coli</i> cells (DH5α) on an LB plate, (BL21 (DE3) LysS cells on LB plate + 25 mg/ml chloramphenicol);<br>
           2) Allow cells to grow at 37℃ overnight;<br>
           2) Allow cells to grow at 37℃ overnight;<br>
           3)Place one colony in 10 ml LB media (+ antibiotic selection if necessary), grow overnight at 37℃;<br>
           3)Place one colony in 10 ml LB media (+ antibiotic selection if necessary), grow overnight at 37℃;<br>
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           8) Pour off media and resuspend cells in 30 ml of cold 0.1 M CaCl2. Transfer the suspended cells into 50 ml polypropylene tubes, and incubate on ice for 30 min;<br>
           8) Pour off media and resuspend cells in 30 ml of cold 0.1 M CaCl2. Transfer the suspended cells into 50 ml polypropylene tubes, and incubate on ice for 30 min;<br>
           9) Centrifuge cells at 40℃ for 10 min at 3,000 g;<br>
           9) Centrifuge cells at 40℃ for 10 min at 3,000 g;<br>
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           10) Pour supernatant and resuspend cells (by pipetting) in 8 ml cold 0.1M CaCl2 containing 15% glycerol Transfer 140 ml into (1.5 ml). Eppendorf tubes placed on ice. Freeze the cells in liquid nitrogen. Cells stored at -80℃ can be used for transformation for up to ~6 months;<br>
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           10) Pour supernatant and resuspend cells (by pipetting) in 8 ml cold 0.1M CaCl2 containing 15% glycerol Transfer 140 ml into (1.5 ml).Eppendorf tubes placed on ice. Freeze the cells in liquid nitrogen. Cells stored at -80℃ can be used for transformation for up to ~6 months;<br>
           11) Add 10 to 40 ng (10 to 25 ml volume) of DNA to 250 ml of competent cells in step;<br>
           11) Add 10 to 40 ng (10 to 25 ml volume) of DNA to 250 ml of competent cells in step;<br>
           12) Incubate the mixture on ice for 30 minutes;<br>
           12) Incubate the mixture on ice for 30 minutes;<br>
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           15) Incubate on ice for 2 minutes;<br>
           15) Incubate on ice for 2 minutes;<br>
           16) Spread the appropriate quantity of cells (50 to 100 ml) on selective media. Store the remaining cells at 4℃.<br>
           16) Spread the appropriate quantity of cells (50 to 100 ml) on selective media. Store the remaining cells at 4℃.<br>
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           (A) E. coli cells from the control tube without DNA in step 12 above are plated on selective medium and nonselective medium. The first plating ensures that the selective medium is working properly since no growth should be observed. The second plating provides the number of viable cells in the absence of selective medium. <br>
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           (A) <i>E. coli</i> cells from the control tube without DNA in step 12 above are plated on selective medium and nonselective medium. The first plating ensures that the selective medium is working properly since no growth should be observed. The second plating provides the number of viable cells in the absence of selective medium. <br>
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           (B) E. coli cells being tested for competency are plated on LB agar containing ampicillin (50 mg/ml final concentration) to ensure that the transformation efficiency has not decreased over time due to storage.<br>
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           (B) <i>E. coli</i> cells being tested for competency are plated on LB agar containing ampicillin (50 mg/ml final concentration) to ensure that the transformation efficiency has not decreased over time due to storage.<br>
           17) Incubate all plates overnight at 37℃.<br>
           17) Incubate all plates overnight at 37℃.<br>
           18) Count the number of colonies.<br>
           18) Count the number of colonies.<br>
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2)Frozen in liquid nitrogen for 5 min, grow at 37 C for 5 min, on ice for 2 min;<br>
2)Frozen in liquid nitrogen for 5 min, grow at 37 C for 5 min, on ice for 2 min;<br>
3)Pour in 1000 LYEB, 200 rpm, grow at 28℃ for 2~3 h;<br>
3)Pour in 1000 LYEB, 200 rpm, grow at 28℃ for 2~3 h;<br>
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4)6000rpm, 2min. Suspend collected bacteria with 100µl YEB and evenly coat that at a YEB medium. (125 mg/L Sm or 50 mg/L rif, and 50 mg/L Kan included);<br>
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4)6000rpm,2min. Suspend collected bacteria with 100µl YEB and evenly coat that at a YEB medium. (125 mg/L Sm or 50 mg/L rif, and 50 mg/L Kan included);<br>
5)Grow upside down at 28℃, for 48h;<br>
5)Grow upside down at 28℃, for 48h;<br>
6)Pick positive clones and grow them in LB medium with antibiotic at 28℃ for 48h;<br>
6)Pick positive clones and grow them in LB medium with antibiotic at 28℃ for 48h;<br>
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           <tr>
           <tr>
             <td class="lastmid">Qualitative detection</td>
             <td class="lastmid">Qualitative detection</td>
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             <td class="lastmid">Have 6 positive seedlings from every transgenic line (about 8 leaves age) , and 6 wild-type seedings with the same growth equally distributed into three 650ml culture bottles. Treat with 10µl 37% formaldehyde for a week. </td>
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             <td class="lastmid">Have 6 positive plants from every transgenic line (about 8 leaves age) , and 6 wild-type seedings with the same growth equally distributed into three 650ml culture bottles. Treat with 10µl 37% formaldehyde for two weeks. </td>
<td class="mid"></td>
<td class="mid"></td>
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    <tr>
    <tr>
             <td class="lastmid"><br>Quantitative detection</td>
             <td class="lastmid"><br>Quantitative detection</td>
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             <td class="lastmid"><br> Have 4 positive seedlings from every transgenic line (about 8 leaves age) in a 650ml culture bottle. Treat with 10µl 37% formaldehyde for 2 weeks. Using a formaldehyde detector (Gastec Passive Dositube, 91D, Ayase, Kanagawa, Japan) was set in the hole to detect gaseous formaldehyde. Three and a half hours later, the measurement was stopped and the results were photographed <i>(Chen et al., 2010)</i>.</td>
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             <td class="lastmid"><br> Have 4 positive plants from every transgenic line (about 8 leaves age) in a 650ml culture bottle. Treat with 10µl 37% formaldehyde for 3 weeks. Using a formaldehyde detector (Gastec Passive Dositube, 91D, Ayase, Kanagawa, Japan) was set in the hole to detect gaseous formaldehyde. Three and a half hours later, the measurement was stopped and the results were photographed <i>(Chen et al., 2010)</i>.</td>
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            <td class="lastmid"><br>Put 4 wild -type seedlings with the same growth of seedlings in experimental group into 650ml culture bottle , with same processing as the case of the experimental group .</td>
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            <td class="lastmid"><br>Put 4 wild -type seedlings with the same growth of seedlings in experimental group into 650ml culture bottle,with same processing as the case of the experimental group.</td>
           </tr>
           </tr>

Latest revision as of 03:29, 18 October 2014

UESTC-China