Team:Tokyo-NoKoGen

From 2014.igem.org

(Difference between revisions)
(Prototype team page)
 
(117 intermediate revisions not shown)
Line 1: Line 1:
{{CSS/Main}}
{{CSS/Main}}
 +
<html>
 +
<style>
-
<html>
+
div#wrapper {
 +
    width:1300px;
 +
    background-color:#ffffff;
 +
    text-align:center;       
 +
            }
-
<!--main content -->
+
div#nav {
-
<table width="70%" align="center">
+
    width:1000px;
 +
    margin:0 auto;
 +
    background-color:#ffffff
 +
    text-align:center;
 +
<!--     position:fixed;
 +
    top:12px;left:140px;-->
 +
        }
 +
div#nav table {
 +
    margin:0 auto;
 +
        }
 +
div#nav td{
 +
width:300px;height:45px;
 +
        margin:0 auto;
 +
text-align:center;
 +
border:none;
 +
font-family:Impact;
 +
        font-size:18px;
 +
}
 +
td a{
 +
text-decoration:none;
 +
}
-
<!--welcome box -->
+
div#header {
-
<tr>
+
    width:900px;
-
<td style="border:1px solid black;" colspan="3" align="center" height="150px" bgColor=#FF404B>
+
    padding-top:5px;
-
<h1 >WELCOME TO iGEM 2014! </h1>
+
    margin:0 auto;
-
<p>Your team has been approved and you are ready to start the iGEM season!
+
    background-image:url("https://static.igem.org/mediawiki/2014/c/c2/Noko14%EF%BC%BFheader.jpg");
-
<br>On this page you can document your project, introduce your team members, document your progress <br> and share your iGEM experience with the rest of the world! </p>
+
<!--    position:fixed;
-
<br>
+
    top:75px;left:130px;-->
-
<p style="color:#E7E7E7"> <a href="https://2014.igem.org/wiki/index.php?title=Team:Tokyo-NoKoGen&action=edit"style="color:#FFFFFF"> Click here  to edit this page!</a> </p>
+
            }
-
</td>
+
-
</tr>
+
-
<tr> <td colspan="3"  height="5px"> </td></tr>
+
div#main {
-
<!-- end welcome box -->
+
    width:800px;
-
<tr>
+
    margin:50px auto;
 +
    text-align:left;
 +
          }
-
<!--navigation menu -->
+
div#content h1 {
-
<td align="center" colspan="3">
+
        display:none;
 +
                }
-
<table  width="100%">
+
div#sub {
 +
    width:150px;
 +
    float:left;
 +
    position:fixed;
 +
    top:100px;left:5px;
 +
        }
 +
div#footer {
 +
    margin:0 auto;
 +
    width:850px;
 +
        }
 +
div#footer img {
 +
    width:200px;
 +
        }
 +
 
 +
p {
 +
    font-size:16px;
 +
    font-family:Georgia;
 +
    line-height:2;
 +
  }
 +
h2 {
 +
    font-size:20px;
 +
    font-family:Georgia;
 +
    text-decoration:none;
 +
  }
 +
 
 +
 
 +
</style>
 +
<body>
 +
<div id="cont">
 +
  <div id="nav">
 +
<table>
<tr heigth="15px"></tr>
<tr heigth="15px"></tr>
<tr heigth="75px">  
<tr heigth="75px">  
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>   
+
<td style="bgcolor:#ffffff;width:400px;"
-
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen"style="color:#000000">Home </a> </td>
+
</td>
 +
 
 +
<td onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>   
 +
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen"style="color:#000000">Project</a> </td>
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
+
<td onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Team"style="color:#000000"> Team </a> </td>
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Team"style="color:#000000"> Team </a> </td>
-
<td style="border:1px solid black;" align="center"  height ="45px"  onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
 
-
<a href="https://igem.org/Team.cgi?year=2014&team_name=Tokyo-NoKoGen"style="color:#000000"> Official Team Profile </a></td>
 
-
<td style="border:1px solid black" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>   
+
<td onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>   
-
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Project"style="color:#000000"> Project</a></td>
+
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/result"style="color:#000000"> Result</a></td>
-
<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
+
<td onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Parts"style="color:#000000"> Parts</a></td>
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Parts"style="color:#000000"> Parts</a></td>
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
+
<td onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
-
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Modeling"style="color:#000000"> Modeling</a></td>
+
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/protocol"style="color:#000000"> Protocols</a></td>
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>   
+
<td onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>   
-
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Notebook"style="color:#000000"> Notebook</a></td>
+
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/note"style=" color:#000000"> Notebook</a></td>
-
<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
+
<td onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Safety"style=" color:#000000"> Safety </a></td>
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Safety"style=" color:#000000"> Safety </a></td>
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
+
<td onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
-
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Attributions"style="color:#000000"> Attributions </a></td>
+
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/HumanPractice"style="color:#000000"> Human Practice </a></td>
 +
 
 +
<td onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
 +
<a href="https://2014.igem.org/Team:Tokyo-NoKoGen/achievement"style="color:#000000">Achievement</a></td>
<td align ="center"> <a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="55px"></a> </td>
<td align ="center"> <a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="55px"></a> </td>
 +
<td style="background-color:#ffffff;width:200px;"></td>
</tr>
</tr>
</table>
</table>
 +
  </div>
 +
  <div id="header">
 +
<img src="https://static.igem.org/mediawiki/2014/c/c2/Noko14%EF%BC%BFheader.jpg">
 +
  </div>
 +
  <div id="main">
 +
<h2>Overview</h2>
 +
-
<!--end navigation menu -->
+
<p> Pesticides are not only harmful to insects, such as cockroaches, but also pose a risk to humans and the environment. A safe pesticide is greatly needed. Our project for iGEM 2014 is “<i>Exterminator coli</i>”, an <i>Escherichia coli</i> machine that exterminates insects such as roaches while being completely safe to mammals and the environment.</p><br>
-
</tr>
+
 +
<p> Roaches and many other insects store their energy in the form of trehalose, which can be converted to glucose, when needed, by the enzyme trehalase. However, mammals store their energy in the form of glycogen, which does not require trehalase for conversion to glucose. Trehalase inhibitors can therefore be used as a pesticide that can control roaches while being harmless for mammals and the environment.</p><br>
-
</tr>
+
<p> We engineered <i>E. coli</i> that produces the trehalase inhibitor, 3,3´-diketotrehalose (3,3´-dkT), a pesticide that is harmless for the environment and mammals. Our engineered <i>E. coli</i> will overexpress trehalose 6-phosphate synthase (OtsA) and trehalose 6-phosphate phosphatase (OtsB), which convert glucose-6-phosphate and UDP-glucose to trehalose, and glucose-3-dehydrogenase (G3DH), which converts trehalose to 3,3’-dkT. We predict that <i>Exterminator coli</i> will continue to produce 3,3’-dkT even after it is ingested by the insect.</p>
-
+
-
</td>
 
-
<tr> <td colspan="3" height="15px"> </td></tr>
+
<img src="https://static.igem.org/mediawiki/2014/4/4a/NoKo14_Ecoli.jpg"><br>
-
<tr><td bgColor="#e7e7e7" colspan="3" height="1px"> </tr>
+
<img src="https://static.igem.org/mediawiki/2014/4/45/Noko14_Project1.png"><br>
-
<tr> <td colspan="3"  height="5px"> </td></tr>
+
<p>Fig. 1 Outline of our project, <i>Exterminator coli</i>.</p><br>
 +
<br>
 +
<h2>Why did we focus on pesticide?</h2>
 +
<p>  Pesticides for insects are used almost everywhere -- not only in agriculture, but also in homes, parks, schools, buildings, forests, and roads. However, it is known that substances included in the pesticide have harmful influence for environment and also to humans. These harmful substances can be diffused in the environment. For example, organophosphates included in the agricultural chemicals affects nervous system, then cause miosis, vomiting, ataxia and muscular twitching. Also, pyrethroid included in spray pesticide does not cause serious poisoning unless it is overdose, but if we absorb surplus pyrethroid, it cause nausea, diarrhea, dizziness and convulsion. Furthermore, boric acid included in poison bait for cockroaches causes dehydration, gastroenteritis and lethargic sleep. There is a fatal case by overdose of boric acid. Therefore, we need pesticide that can exterminate only insects without any effect for environment and humans.</p><br><br>
 +
<h2>Mammal friendly pesticide    -Trehalase inhibitor-</h2>
 +
<p>  Many insects, including cockroaches, store their energy in the form of the disaccharide trehalose in their blood. Insects utilize trehalose in their cell metabolism by reconverting it into glucose by the enzyme trehalase (α-glucoside-1-glucohydrolase), which hydrolyses trehalose (1). The glucose can then be phosphorylated and used for glycogen synthesis or catabolized via glycolysis or the pentose phosphate pathway. Although mammals do not synthesize trehalose, they possess a trehalase in their intestine and kidney, which allows them assimilate trehalose if present in their diet. A trehalose inhibitor will therefore not pose any significant harm to mammals.<p><br>
 +
<img src="https://static.igem.org/mediawiki/2014/d/de/Noko14_Ins1.png" width="80%">
 +
<p>Fig. 2 Synthesis of trehalose in insects</p><br><br>
-
<!--requirements section -->
+
<p>   We discovered from the literature that 3,3’-diketotrehalose (3,3’-dkT) can be used as a trehalase inhibitor (Kojima <i>et al</i>, 2001). Trehalose is converted to 3,3’-dkT by the enzymatic reaction of glucose 3 dehydrogenase (G3DH). The chemical structure of 3,3’-dkT resembles trehalose, so the enzyme activity of trehalase will be prevented by competitive inhibition.  </p><br><br>
-
<tr><td colspan="3"> <h3> Requirements </h3></td></tr>
+
-
<tr>
+
-
<td width="45%"  valign="top">  
+
-
<p> Please be sure to keep these links, your audience will want to find your: </p>
+
<p><b>Reference</b></p>
 +
<p>(1) Becker, A. <i>et al </i>. (1996) The regulation of trehalose metabolism in insects. <i>Experientia </i>, <b>52</b>, 433-439</p>
-
<!-- Links to other team pages -->
 
-
<ul>
 
-
<li><a href="https://2014.igem.org/Team:Tokyo-NoKoGen">Home</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Team">Team</a> </li>
 
-
<li><a href="https://igem.org/Team.cgi?year=2013&team_name=Tokyo-NoKoGen">Official Team Profile</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Project">Project</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Parts">Parts</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Modeling">Modeling</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Notebook">Notebook</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Safety">Safety</a> </li>
 
-
<li><a href="https://2014.igem.org/Team:Tokyo-NoKoGen/Attributions">Attributions</a> </li>
 
-
</ul>
 
-
</td>
+
  </div>
-
 
+
<div id="sub">
-
<td > </td>
+
<img src="https://static.igem.org/mediawiki/2014/6/6e/Noko14_Background.jpg">
-
<td width="45%">
+
</div>
-
 
+
<div id="footer">
-
<p>There are a few wiki requirements teams must follow:</p>
+
<a href="http://www.idtdna.com/site"><img src="https://static.igem.org/mediawiki/2014/5/5e/Noko14_IDT.png"></a>
-
<ul>
+
<a href="http://www.ultizyme.jp/"><img src="https://static.igem.org/mediawiki/2014/c/ce/Noko14_Image91.jpg"></a>
-
<li>All pages, images and files must be hosted on the <a href ="https://2014.igem.org/Special:Upload">  2014.igem.org server</a>. </li>
+
<a href="http://www.cosmobio.co.jp/index_e.asp"><img src="https://static.igem.org/mediawiki/2014/e/e5/Noko14_Logo_e.jpg"></a>
-
<li>All pages must be created under the team’s name space.</li>
+
<a href="http://www.mbl.co.jp/e/index.html"><img src="https://static.igem.org/mediawiki/2014/4/4f/Noko14_MBL.gif"></a>
-
<li>As part of your documentation, keep the links from the menu to the left. </li>
+
<a href="http://www.idtdna.com/site"><img src="https://static.igem.org/mediawiki/2014/a/ad/Noko14_li.png"></a>
-
<li>Do not use flash in wiki code. </li>
+
<a href="http://www.tuat.ac.jp/en/index.html"><img src="https://static.igem.org/mediawiki/2014/3/39/Noko14_tuat.png"></a>
-
<li>The <a href="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png"> iGEM logo </a> should be placed on the upper part of every page and should link to <a href="https://2014.igem.org/Main_Page">2014.igem.org</a>.</li>
+
<a href="http://www.tuat.ac.jp/~tanpaku/"><img src="https://static.igem.org/mediawiki/2014/3/3c/Noko14_ike.jpg"></a>
-
</ul>
+
<a href="http://www.tuat.ac.jp/~kakusan/index.html"><img src="https://static.igem.org/mediawiki/2014/7/77/Noko14_ikeken.jpg"></a>
-
<p>Visit the <a href="https://2014.igem.org/Wiki_How-To"> Wiki How To page </a> for a complete list of requirements, tips and other useful information. </p>
+
  </div>
-
 
+
</div>
-
</td>
+
</body>
-
</tr>
+
</html>
-
 
+
-
 
+
-
<tr> <td colspan="3"  height="15px"> </td></tr>
+
-
<tr><td bgColor="#e7e7e7" colspan="3" height="1"> </tr>
+
-
 
+
-
 
+
-
<!--tips  -->
+
-
<tr><td colspan="3" > <h3> Tips  </h3></td></tr>
+
-
 
+
-
<tr>
+
-
<td width="45%" valign="top">  
+
-
<p>We are currently working on providing teams with some easy to use design templates.
+
-
<br> In the meantime you can also view other team wikis for inspiration! Here are some very good examples</p>
+
-
 
+
-
<ul>
+
-
<li> <a href="https://2013.igem.org/Team:SDU-Denmark/"> 2013 SDU Denmark </a> </li>
+
-
<li> <a href="https://2013.igem.org/Team:SYSU-China">2013 SYSU China</a> </li>
+
-
<li> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_ATCG"> 2013 Shenxhen BGIG ATCG </a></li>
+
-
<li> <a href="https://2013.igem.org/Team:Colombia_Uniandes">2013 Colombia Unianades </a></li>
+
-
<li> <a href="https://2013.igem.org/Team:Lethbridge">2013 Lethbridge</a></li>
+
-
</ul>
+
-
 
+
-
<p>For a full wiki list, you can visit <a href="https://igem.org/Team_Wikis?year=2013">iGEM 2013 web sites </a> and <a href="https://igem.org/Team_Wikis?year=2012">iGEM 2012 web sites</a>  lists. </p>
+
-
</td>
+
-
 
+
-
<td> </td>
+
-
<td width="45%">
+
-
 
+
-
<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
+
-
 
+
-
<ul>
+
-
<li>State your accomplishments! Tell people what you have achieved from the start. </li>
+
-
<li>Be clear about what you are doing and what you plan to do.</li>
+
-
<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
+
-
<li>Make sure information is easy to find; nothing should be more than 3 clicks away.  </li>
+
-
<li>Avoid using very small fonts and low contrast colors; information should be easy to read. </li>
+
-
<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="">iGEM 2013 calendar</a> </li>
+
-
<li>Have lots of fun! </li>
+
-
</ul>
+
-
</br>
+
-
</td>
+
-
</tr>
+
-
</table>
+

Latest revision as of 01:45, 18 October 2014

Overview

 Pesticides are not only harmful to insects, such as cockroaches, but also pose a risk to humans and the environment. A safe pesticide is greatly needed. Our project for iGEM 2014 is “Exterminator coli”, an Escherichia coli machine that exterminates insects such as roaches while being completely safe to mammals and the environment.


 Roaches and many other insects store their energy in the form of trehalose, which can be converted to glucose, when needed, by the enzyme trehalase. However, mammals store their energy in the form of glycogen, which does not require trehalase for conversion to glucose. Trehalase inhibitors can therefore be used as a pesticide that can control roaches while being harmless for mammals and the environment.


 We engineered E. coli that produces the trehalase inhibitor, 3,3´-diketotrehalose (3,3´-dkT), a pesticide that is harmless for the environment and mammals. Our engineered E. coli will overexpress trehalose 6-phosphate synthase (OtsA) and trehalose 6-phosphate phosphatase (OtsB), which convert glucose-6-phosphate and UDP-glucose to trehalose, and glucose-3-dehydrogenase (G3DH), which converts trehalose to 3,3’-dkT. We predict that Exterminator coli will continue to produce 3,3’-dkT even after it is ingested by the insect.



Fig. 1 Outline of our project, Exterminator coli.



Why did we focus on pesticide?

 Pesticides for insects are used almost everywhere -- not only in agriculture, but also in homes, parks, schools, buildings, forests, and roads. However, it is known that substances included in the pesticide have harmful influence for environment and also to humans. These harmful substances can be diffused in the environment. For example, organophosphates included in the agricultural chemicals affects nervous system, then cause miosis, vomiting, ataxia and muscular twitching. Also, pyrethroid included in spray pesticide does not cause serious poisoning unless it is overdose, but if we absorb surplus pyrethroid, it cause nausea, diarrhea, dizziness and convulsion. Furthermore, boric acid included in poison bait for cockroaches causes dehydration, gastroenteritis and lethargic sleep. There is a fatal case by overdose of boric acid. Therefore, we need pesticide that can exterminate only insects without any effect for environment and humans.



Mammal friendly pesticide -Trehalase inhibitor-

 Many insects, including cockroaches, store their energy in the form of the disaccharide trehalose in their blood. Insects utilize trehalose in their cell metabolism by reconverting it into glucose by the enzyme trehalase (α-glucoside-1-glucohydrolase), which hydrolyses trehalose (1). The glucose can then be phosphorylated and used for glycogen synthesis or catabolized via glycolysis or the pentose phosphate pathway. Although mammals do not synthesize trehalose, they possess a trehalase in their intestine and kidney, which allows them assimilate trehalose if present in their diet. A trehalose inhibitor will therefore not pose any significant harm to mammals.


Fig. 2 Synthesis of trehalose in insects



 We discovered from the literature that 3,3’-diketotrehalose (3,3’-dkT) can be used as a trehalase inhibitor (Kojima et al, 2001). Trehalose is converted to 3,3’-dkT by the enzymatic reaction of glucose 3 dehydrogenase (G3DH). The chemical structure of 3,3’-dkT resembles trehalose, so the enzyme activity of trehalase will be prevented by competitive inhibition.



Reference

(1) Becker, A. et al . (1996) The regulation of trehalose metabolism in insects. Experientia , 52, 433-439