"
Team:Bielefeld-CeBiTec/Notebook/StrainsAndConstructs
From 2014.igem.org
(Difference between revisions)
| (2 intermediate revisions not shown) | |||
| Line 175: | Line 175: | ||
<br><br><br><br> | <br><br><br><br> | ||
| - | <h1> Constructs </h1> | + | <h1>Additional Constructs </h1> |
<div class="element"> | <div class="element"> | ||
| Line 245: | Line 245: | ||
</tr> | </tr> | ||
| - | + | <tr> | |
| + | <td width="30%" id=""> <i>pSB1A2-T7:Hneap-prkA</i> </td> | ||
| + | <td width="40%">Amp<sup>R</sup>, CDS of RubisCO (<i>Hneap</i>) from <i>Halothiobacillus neapolitanus</i> and CDS of prkA from <i>S.elongatus</i> under the T7 promoter</td> | ||
| + | <td width="30%"></td> | ||
| + | </tr> | ||
| Line 255: | Line 259: | ||
<tr> | <tr> | ||
| - | <td width="30%" id=""> <i>pSB1A2_T7_alsS_ilvC_ilvD_kivD </td> | + | <td width="30%" id="pSB1A2_T7_IB"> <i>pSB1A2_T7_alsS_ilvC_ilvD_kivD </td> |
<td width="40%">Isobutanol production pathway under the T7 promoter</td> | <td width="40%">Isobutanol production pathway under the T7 promoter</td> | ||
<td width="30%"></td> | <td width="30%"></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td width="30%" id=""> <i>pSB1A2_T7_alsS_ilvC_ilvD_kivD </td> | + | <td width="30%" id="pSB1A2_T7_IB_adhA"> <i>pSB1A2_T7_alsS_ilvC_ilvD_kivD </td> |
<td width="40%">Isobutanol production pathway including the <i>adhA</i> from <i>L. lactis</i> under the T7 promoter</td> | <td width="40%">Isobutanol production pathway including the <i>adhA</i> from <i>L. lactis</i> under the T7 promoter</td> | ||
<td width="30%"></td> | <td width="30%"></td> | ||
Latest revision as of 21:49, 17 October 2014
Strains
| Name | Properties / Genotype | BioBrick / Reference |
|---|---|---|
| General | ||
| Escherichia coli KRX | [F ́,traD36,ΔompP,proA+B+,lacIq,Δ(lacZ)M15]ΔompT,endA1,recA1,gyrA96(Nalr),thi-1,hsdR17 (rK–, mK+), e14–(McrA–),relA1,supE44,Δ(lac-proAB),Δ(rhaBAD)::T7 RNA polymerase | Promega |
| E. coli DH5α | F-φ80lacZ∆M15∆(lacZYA-argF) U169recA1endA1hsdR17(rk-, mk+)gal-phoAsupE44λ-thi-1gyrA96relA1 | invitrogen |
| Module 1 | ||
| E.coli KRX ΔdcuB::oprF | [F ́,traD36,ΔompP,proA+B+,lacIq,Δ(lacZ)M15]ΔompT,endA1,recA1,gyrA96(Nalr),thi-1,hsdR17 (rK–, mK+), e14–(McrA–),relA1,supE44,Δ(lac-proAB),Δ(rhaBAD)::T7 RNA polymerase, ΔdcuB::oprF | BBa_K1172507 |
| JW4084-1 | ΔdcuB749::kan | Baba et al., 2006 |
| JW0506-1 | ΔfdrA730::kan | Baba et al., 2006 |
| Actinobacillus succinogenes 130Z | wild type | Guettler et al., 1999 |
| Geobacter sulfurreducens PCA | wild type | Viulu et al., 2013 |
| Module 2 | ||
| E.coli BL21 | F– ompT gal dcm lon hsdSB(rB- mB-) λ(DE3 [lacI lacUV5-T7 gene 1 ind1 sam7 nin5]) | NEB |
| Module 3 | ||
| JW1228-1 | ΔadhE748::kan | Baba et al., 2006 |
| Biosafety | ||
| E. coli KRX Δalr | [F ́,traD36,ΔompP,proA+B+,lacIq,Δ(lacZ)M15]ΔompT,endA1,recA1,gyrA96(Nalr),thi-1,hsdR17 (rK–, mK+), e14–(McrA–),relA1,supE44,Δ(lac-proAB),Δ(rhaBAD)::T7 RNA polymerase, Δalr | |
| E. coli KRX ΔdadX | [F ́,traD36,ΔompP,proA+B+,lacIq,Δ(lacZ)M15]ΔompT,endA1,recA1,gyrA96(Nalr),thi-1,hsdR17 (rK–, mK+), e14–(McrA–),relA1,supE44,Δ(lac-proAB),Δ(rhaBAD)::T7 RNA polymerase, ΔdadX | |
| E. coli KRX Δalr ΔdadX | [F ́,traD36,ΔompP,proA+B+,lacIq,Δ(lacZ)M15]ΔompT,endA1,recA1,gyrA96(Nalr),thi-1,hsdR17 (rK–, mK+), e14–(McrA–),relA1,supE44,Δ(lac-proAB),Δ(rhaBAD)::T7 RNA polymerase, ΔdadX, Δalr | |
| E. coli DH5α Δalr | F-φ80lacZ∆M15∆(lacZYA-argF) U169recA1endA1hsdR17(rk-, mk+)gal-phoAsupE44λ-thi-1gyrA96relA1 Δalr | |
| E. coli DH5α ΔdadX | F-φ80lacZ∆M15∆(lacZYA-argF) U169recA1endA1hsdR17(rk-, mk+)gal-phoAsupE44λ-thi-1gyrA96relA1 ΔdadX | |
| E. coli DH5α Δalr ΔdadX | F-φ80lacZ∆M15∆(lacZYA-argF) U169recA1endA1hsdR17(rk-, mk+)gal-phoAsupE44λ-thi-1gyrA96relA1 Δalr ΔdadX | |
Additional Constructs
| Name | Properties | BioBrick / Reference |
|---|---|---|
| General | ||
| _ | ||
| Module 1 | ||
| _ | ||
| Module 2 | ||
| pHnCBS1D | cbbL-cbbS-csoS2-csoS3-csoS4A-csoS4B-csoS1C-csoS1A-csoS1B-csoS1D, CmR | Bonacci et al., 2012 |
| pET16b-glpXC | AmpR, glpXC encodes FBPase/SBPase of Bacillus methanolicus | Stolzenberger al.,2013 |
| pSB1A2-T7:prkA | AmpR, CDS of phosphoribulokinase (prkA) from Synechococcus elongatus under the T7 promoter | |
| pSB1A2-T7:Hneap | AmpR, CDS of RubisCO (Hneap) from Halothiobacillus neapolitanus under the T7 promoter | |
| pSB1A2-T7:Hneap-prkA | AmpR, CDS of RubisCO (Hneap) from Halothiobacillus neapolitanus and CDS of prkA from S.elongatus under the T7 promoter | |
| Module 3 | ||
| pSB1A2_T7_alsS_ilvC_ilvD_kivD | Isobutanol production pathway under the T7 promoter | |
| pSB1A2_T7_alsS_ilvC_ilvD_kivD | Isobutanol production pathway including the adhA from L. lactis under the T7 promoter | |
| Biosafety | ||
| --- | ||
References
-
Stolzenberger, J., Lindner, S.N., Persicke, M., Brautaset, T., and Wendisch, V.F. (2013). Characterization of Fructose 1,6-Bisphosphatase and Sedoheptulose 1,7-Bisphosphatase from the Facultative Ribulose Monophosphate Cycle Methylotroph Bacillus methanolicus. J Bacteriol 195, 5112–5122.
-
Baba, T., T. Ara, M. Hasegawa, Y. Takai, Y. Okumura, M. Baba, K.A. Datsenko, M. Tomita, B.L. Wanner, H. Mori 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2:1-11
-
Guettler, M. V., Rumler, D., Jain, M. K. (1999). Actinobacillus succinogenes sp. nov., a novel succinic-acid-producing bacterium from the bovine rumen. Int.J.Syst.Bacteriol. 49 : 207-216.
-
Viulu, S., Nakamura, K., Kojima, A., Yoshiyasu, Y., Saitou, S., Takamizawa, K. (2013). Geobacter sulfurreducens subsp. ethanolicus, subsp. nov., an ethanol-utilizing dissimilatory Fe(III)-reducing bacterium from a lotus field. J Gen Appl Microbiol 59 ( 5 ): 325-34.
