Team:GeorgiaTech/Project/Primers

From 2014.igem.org

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<p>The RBS primer is a standard primer that can be used for site directed mutagenesis in all linearized backbones available from the iGEM database.<text> such and such and such and such and such and such and such</text></p>
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<p><b>The RBS primer</b> is a standard primer that can be used for site directed mutagenesis in all linearized backbones available from the iGEM database.<text> such and such and such and such and such and such and such</text></p>
<h2>Background</h2>
<h2>Background</h2>
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</div>
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<p>Most of the BioBrick parts requires a Ribosomal Binding Site to express the protein. This has proven problematic as the RBS is very small and hard to insert using 3A Assembly. We believe the creation of an oligo primer with this RBS may be easier to place the RBS in front of the protein that is needed to be expressed. An easy oligo primer that could be used in PCR extension and then placed into a vector backbone would save time and frustration as to whether the part had been inserted.<text>such and such</text></p>
+
<p><b>Most BioBrick parts</b> require a Ribosomal Binding Site to express the protein. This has proven problematic as the RBS is very small and hard to insert using 3A Assembly. We believe the creation of an oligo primer with this RBS may be easier to place the RBS in front of the protein that is needed to be expressed. An easy oligo primer that could be used in PCR extension and then placed into a vector backbone would save time and frustration as to whether the part had been inserted.<text>such and such</text></p>
<h2>Design</h2>
<h2>Design</h2>
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<div class="c-1">
</div>
</div>
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<p>The format of this primer needs the BioBrick formatted prefix with an additional strong Ribosomal binding site within it. The prefix of the standard BioBrick was analyzed and the primer was found to be able to be inserted after the XbaI site and still have the scar intact between the part and the RBS site. The RBS sites chosen were selected from the Anderson RBS library degenerate sequence and a library was created with that degenerate sequence via the Salis Lab at Penn State University, optimized for E. coli 16s.</p>
+
<p><b>The format of this primer</b> needs the BioBrick formatted prefix with an additional strong Ribosomal binding site within it. The prefix of the standard BioBrick was analyzed and the primer was found to be able to be inserted after the XbaI site and still have the scar intact between the part and the RBS site. The RBS sites chosen were selected from the Anderson RBS library degenerate sequence and a library was created with that degenerate sequence via the Salis Lab at Penn State University, optimized for E. coli 16s.</p>
<img src="https://static.igem.org/mediawiki/2014/9/99/RBS_Primer.png" width="100%">
<img src="https://static.igem.org/mediawiki/2014/9/99/RBS_Primer.png" width="100%">
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<p>The Promoter primer is a standard primer that can be used for site directed mutagenesis in all linearized backbones available from the iGEM database and the Anderson RBS sites from the Anderson RBS library.</p>
+
<p><b>The Promoter primer</b> is a standard primer that can be used for site directed mutagenesis in all linearized backbones available from the iGEM database and the Anderson RBS sites from the Anderson RBS library.</p>
<h2>Background</h2>
<h2>Background</h2>
<div class="c-1">
<div class="c-1">
</div>
</div>
-
<p>Most of the BioBrick parts requires a Promoter to express the protein. This has proven problematic as the promoter is very small and hard to insert using 3A Assembly. We believe the creation of an oligo primer with this promoter may be easier to place the promoter in front of the RBS site that is needed to be expressed. An easy oligo primer that could be used in PCR extension and then placed into a vector backbone would save time and frustration as to whether the part had been inserted.</p>
+
<p><b>Most BioBrick parts require</b> a Promoter to express the protein. This has proven problematic as the promoter is very small and hard to insert using 3A Assembly. We believe the creation of an oligo primer with this promoter may be easier to place the promoter in front of the RBS site that is needed to be expressed. An easy oligo primer that could be used in PCR extension and then placed into a vector backbone would save time and frustration as to whether the part had been inserted.</p>
<h2>Design</h2>
<h2>Design</h2>
<div class="c-1">
<div class="c-1">
</div>
</div>
-
<p>The format of this primer needs the BioBrick formatted prefix, the promoter and part of the RBS site. The prefix of the standard BioBrick was analyzed and the primer was found to be able to be inserted after the XbaI site and be able to insert the promoter just before the RBS site. The promoters were selected from the Anderson Constitutive Promoter Library in the iGEM parts registry.<text>such and such and such and such and such and such and such and such and such and such and such and such and such</text></p>
+
<p><b>The format of this primer</b> needs the BioBrick formatted prefix, the promoter and part of the RBS site. The prefix of the standard BioBrick was analyzed and the primer was found to be able to be inserted after the XbaI site and be able to insert the promoter just before the RBS site. The promoters were selected from the Anderson Constitutive Promoter Library in the iGEM parts registry.<text>such and such and such and such and such and such and such and such and such and such and such and such and such</text></p>
<img src="https://static.igem.org/mediawiki/2014/6/64/Promoter_Primer.png" width="100%">
<img src="https://static.igem.org/mediawiki/2014/6/64/Promoter_Primer.png" width="100%">

Revision as of 18:25, 11 July 2014

Biobrick Primers for Site-Directed Insertion Mutagenesis

Ribosomal Binding Site Insertion

Purpose

The RBS primer is a standard primer that can be used for site directed mutagenesis in all linearized backbones available from the iGEM database. such and such and such and such and such and such and such

Background

Most BioBrick parts require a Ribosomal Binding Site to express the protein. This has proven problematic as the RBS is very small and hard to insert using 3A Assembly. We believe the creation of an oligo primer with this RBS may be easier to place the RBS in front of the protein that is needed to be expressed. An easy oligo primer that could be used in PCR extension and then placed into a vector backbone would save time and frustration as to whether the part had been inserted.such and such

Design

The format of this primer needs the BioBrick formatted prefix with an additional strong Ribosomal binding site within it. The prefix of the standard BioBrick was analyzed and the primer was found to be able to be inserted after the XbaI site and still have the scar intact between the part and the RBS site. The RBS sites chosen were selected from the Anderson RBS library degenerate sequence and a library was created with that degenerate sequence via the Salis Lab at Penn State University, optimized for E. coli 16s.

Promoter Sequence Insertion

Purpose

The Promoter primer is a standard primer that can be used for site directed mutagenesis in all linearized backbones available from the iGEM database and the Anderson RBS sites from the Anderson RBS library.

Background

Most BioBrick parts require a Promoter to express the protein. This has proven problematic as the promoter is very small and hard to insert using 3A Assembly. We believe the creation of an oligo primer with this promoter may be easier to place the promoter in front of the RBS site that is needed to be expressed. An easy oligo primer that could be used in PCR extension and then placed into a vector backbone would save time and frustration as to whether the part had been inserted.

Design

The format of this primer needs the BioBrick formatted prefix, the promoter and part of the RBS site. The prefix of the standard BioBrick was analyzed and the primer was found to be able to be inserted after the XbaI site and be able to insert the promoter just before the RBS site. The promoters were selected from the Anderson Constitutive Promoter Library in the iGEM parts registry.such and such and such and such and such and such and such and such and such and such and such and such and such