Team:UCL/Science/Sequences
From 2014.igem.org
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<h3>BioBrick Designs for Our Genes</h3> | <h3>BioBrick Designs for Our Genes</h3> | ||
- | <h4><a name="K1336000" href="http://parts.igem.org/Part:BBa_K1336000">[New] BBa_K1336000 / AzoR Part-only sequence (612bp) | + | <h4><a name="K1336000" href="http://parts.igem.org/Part:BBa_K1336000">[New] BBa_K1336000 / AzoR Part-only sequence (612bp)</a></h4> |
<p class="widthCorrect">Sequence taken from <a href="http://www.ncbi.nlm.nih.gov/nuccore/26986745?report=fasta&from=3267527&to=3268138">Lisbon</a>.</p> | <p class="widthCorrect">Sequence taken from <a href="http://www.ncbi.nlm.nih.gov/nuccore/26986745?report=fasta&from=3267527&to=3268138">Lisbon</a>.</p> | ||
<font size="2"><table class="table table-striped table-bordered"> | <font size="2"><table class="table table-striped table-bordered"> | ||
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<br> | <br> | ||
- | <h4><a name="K1336001" href="http://parts.igem.org/Part:BBa_K1336001">[New] BBa_K1336001 / AzoR 1B6 (heat-stable AzoR mutant) Part-only sequence (612bp) | + | <h4><a name="K1336001" href="http://parts.igem.org/Part:BBa_K1336001">[New] BBa_K1336001 / AzoR 1B6 (heat-stable AzoR mutant) Part-only sequence (612bp)</a></h4> |
<p class="widthCorrect">Sequence given from Lisbon group directly.</p> | <p class="widthCorrect">Sequence given from Lisbon group directly.</p> | ||
<font size="2"><table class="table table-striped table-bordered"> | <font size="2"><table class="table table-striped table-bordered"> | ||
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<br> | <br> | ||
- | <h4><a name="K1336002" href="http://parts.igem.org/Part:BBa_K1336002">[Proposed] BBa_K1336002 / CotA Part-only sequence (1542bp) | + | <h4><a name="K1336002" href="http://parts.igem.org/Part:BBa_K1336002">[Proposed] BBa_K1336002 / CotA Part-only sequence (1542bp)</a></h4> |
<p class="widthCorrect">Sequence given from Lisbon group directly.</p> | <p class="widthCorrect">Sequence given from Lisbon group directly.</p> | ||
<font size="2"><table class="table table-striped table-bordered"> | <font size="2"><table class="table table-striped table-bordered"> | ||
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<br> | <br> | ||
- | <h4><a name="K1336003" href="http://parts.igem.org/Part:BBa_K1336003">[New] BBa_K1336003 / BsDyP Part-only sequence (1251bp) | + | <h4><a name="K1336003" href="http://parts.igem.org/Part:BBa_K1336003">[New] BBa_K1336003 / BsDyP Part-only sequence (1251bp)</a></h4> |
<p class="widthCorrect">Sequence given from Lisbon group directly.</p> | <p class="widthCorrect">Sequence given from Lisbon group directly.</p> | ||
<font size="2"><table class="table table-striped table-bordered"> | <font size="2"><table class="table table-striped table-bordered"> | ||
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<br> | <br> | ||
- | <h4><a name="K1336004" href="http://parts.igem.org/Part:BBa_K1336004">[Proposed] BBa_K1336004 / PpDyP Part-only sequence (864bp) | + | <h4><a name="K1336004" href="http://parts.igem.org/Part:BBa_K1336004">[Proposed] BBa_K1336004 / PpDyP Part-only sequence (864bp)</a></h4> |
<p class="widthCorrect">Sequence taken from <a href="http://www.ncbi.nlm.nih.gov/nuccore/24987239?from=3681833&to=3682696&sat=4&sat_key=105780727&report=fasta">Lisbon</a>.</p> | <p class="widthCorrect">Sequence taken from <a href="http://www.ncbi.nlm.nih.gov/nuccore/24987239?from=3681833&to=3682696&sat=4&sat_key=105780727&report=fasta">Lisbon</a>.</p> | ||
<font size="2"><table class="table table-striped table-bordered"> | <font size="2"><table class="table table-striped table-bordered"> | ||
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<br> | <br> | ||
- | <h4><a name="K500000" href="http://parts.igem.org/Part:BBa_K500000">[Improvement] BBa_K500000 / LiP Part-only sequence (1116bp) | + | <h4><a name="K500000" href="http://parts.igem.org/Part:BBa_K500000">[Improvement] BBa_K500000 / LiP Part-only sequence (1116bp)</a></h4> |
<p class="widthCorrect">Sequence taken from the initial page; not currently showing our improvements.</p> | <p class="widthCorrect">Sequence taken from the initial page; not currently showing our improvements.</p> | ||
<font size="2"><table class="table table-striped table-bordered"> | <font size="2"><table class="table table-striped table-bordered"> | ||
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http://parts.igem.org/wiki/index.php?title=Part:BBa_K729006 (1612bp) Device. | http://parts.igem.org/wiki/index.php?title=Part:BBa_K729006 (1612bp) Device. | ||
http://parts.igem.org/wiki/index.php?title=Part:BBa_K729002 (1551bp) Part-only.--> | http://parts.igem.org/wiki/index.php?title=Part:BBa_K729002 (1551bp) Part-only.--> | ||
- | <h4><a name="K729006" href="http://parts.igem.org/Part:BBa_K729006">[Improvement] BBa_K729006 / CueO Part-only sequence (1612bp) | + | <h4><a name="K729006" href="http://parts.igem.org/Part:BBa_K729006">[Improvement] BBa_K729006 / CueO Part-only sequence (1612bp)</a></h4> |
<p class="widthCorrect">Sequence taken from the initial page; not currently showing our improvements.</p> | <p class="widthCorrect">Sequence taken from the initial page; not currently showing our improvements.</p> | ||
<font size="2"><table class="table table-striped table-bordered"> | <font size="2"><table class="table table-striped table-bordered"> | ||
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<br> | <br> | ||
- | <h4><a name="K1336005" href="http://parts.igem.org/Part:BBa_K1336005">[New] BBa_K1336005 / ispB Part-only sequence ( | + | <h4><a name="K1336005" href="http://parts.igem.org/Part:BBa_K1336005">[New] BBa_K1336005 / ispB Part-only sequence (562bp)</a></h4> |
<p class="widthCorrect">The first sequence below shows the <a href="http://www.ncbi.nlm.nih.gov/protein/16131077">"sense" ispB gene</a>, but we use the second sequence, the Reverse Complement to design primers to produce an antisense fragment for <a href="http://jb.asm.org/content/179/9/3058.short">gene knockdown</a> (i.e. as RNAi).</p><br> | <p class="widthCorrect">The first sequence below shows the <a href="http://www.ncbi.nlm.nih.gov/protein/16131077">"sense" ispB gene</a>, but we use the second sequence, the Reverse Complement to design primers to produce an antisense fragment for <a href="http://jb.asm.org/content/179/9/3058.short">gene knockdown</a> (i.e. as RNAi).</p><br> | ||
- | <p>"Sense" ispB sequence</p> | + | <p>"Sense" ispB sequence (972bp)</p> |
Black = region for PCR. Underlined CTG CAG = illegal PstI restriction site. | Black = region for PCR. Underlined CTG CAG = illegal PstI restriction site. | ||
<font size="2"><table class="table table-striped table-bordered"> | <font size="2"><table class="table table-striped table-bordered"> | ||
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</table></font> | </table></font> | ||
- | <p>"Antisense" ispB sequence</p> | + | <p>"Antisense" ispB sequence (972bp)</p> |
To create the RNAi/antisense fragment, we first get the reverse complement of the full ispB gene, before designing the primers to amplify the black region. | To create the RNAi/antisense fragment, we first get the reverse complement of the full ispB gene, before designing the primers to amplify the black region. | ||
<font size="2"><table class="table table-striped table-bordered"> | <font size="2"><table class="table table-striped table-bordered"> | ||
<tr> | <tr> | ||
<td style="text-align:right;"> | <td style="text-align:right;"> | ||
- | <pre>892<br />793<br />694<br />595<br />496<br />397<br />298<br />199<br />100<br />1</pre> | + | <!--<pre>892<br />793<br />694<br />595<br />496<br />397<br />298<br />199<br />100<br />1</pre>--> |
+ | <pre>1<br />100<br />199<br />298<br />397<br />496<br />595<br />694<br />793<br />892</pre> | ||
</td> | </td> | ||
<td style="text-align:left;"> | <td style="text-align:left;"> | ||
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</td> | </td> | ||
</tr> | </tr> | ||
- | + | </table></font> | |
+ | |||
+ | <p>"Antisense" RNAi ispB sequence PCR fragment (562bp)</p> | ||
+ | ... | ||
+ | <font size="2"><table class="table table-striped table-bordered"> | ||
<tr> | <tr> | ||
<td style="text-align:right;"> | <td style="text-align:right;"> | ||
- | <pre>1<br /> | + | <pre>1<br />98<br />197<br />296<br />395<br />494</pre> |
</td> | </td> | ||
<td style="text-align:left;"> | <td style="text-align:left;"> | ||
Line 156: | Line 161: | ||
</table></font> | </table></font> | ||
- | <h4><a name="K1336006" href="http://parts.igem.org/Part:BBa_K1336006">[New] BBa_K1336006 / LacI Expression Cassette + ispB Part-only sequence ( | + | <h4><a name="K1336006" href="http://parts.igem.org/Part:BBa_K1336006">[New] BBa_K1336006 / LacI Expression Cassette + ispB Part-only sequence (Xbp)</a></h4> |
<p class="widthCorrect">LacI EC + K1336005.</p><br> | <p class="widthCorrect">LacI EC + K1336005.</p><br> | ||
<p>LacI EC + "Antisense" ispB Device sequence</p> | <p>LacI EC + "Antisense" ispB Device sequence</p> | ||
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<br> | <br> | ||
- | <h4><a name="K1336007" href="http://parts.igem.org/Part:BBa_K1336007">[New] BBa_K1336007 / LacI Expression Cassette + BsDyP Part-only sequence (XXXbp) | + | <h4><a name="K1336007" href="http://parts.igem.org/Part:BBa_K1336007">[New] BBa_K1336007 / LacI Expression Cassette + BsDyP Part-only sequence (XXXbp)</a></h4> |
<p class="widthCorrect">LacI EC + K1336003.</p><br> | <p class="widthCorrect">LacI EC + K1336003.</p><br> | ||
<p>LacI EC + BsDyP Device sequence</p> | <p>LacI EC + BsDyP Device sequence</p> | ||
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<h3>Plasmid Backbone / Vectors</h3> | <h3>Plasmid Backbone / Vectors</h3> | ||
- | <h4><a name="pET21a+" href="http://www.addgene.org/browse/sequence_vdb/2549/">pET-21a (+) sequence ( | + | <h4><a name="pET21a+" href="http://www.addgene.org/browse/sequence_vdb/2549/">pET-21a (+) sequence (5443bp) [Link, see DT]</a></h4> |
<p class="widthCorrect">...</p> | <p class="widthCorrect">...</p> | ||
<font size="2"><table class="table table-striped table-bordered"> | <font size="2"><table class="table table-striped table-bordered"> | ||
<tr> | <tr> | ||
<td style="text-align:right;"> | <td style="text-align:right;"> | ||
- | + | <pre>1<br />100<br />199<br />298<br />397<br />496<br />595<br />694<br />793<br />892<br />991<br />1090<br />1189<br />1288<br />1387<br />1486<br />1585<br />1684<br />1783<br />1882<br />1981<br />2080<br />2179<br />2278<br />2377<br />2476<br />2575<br />2674<br />2773<br />2872<br />2971<br />3070<br />3169<br />3268<br />3367<br />3466<br />3565<br />3664<br />3763<br />3862<br />3961<br />4060<br />4159<br />4258<br />4357<br />4456<br />4555<br />4654<br />4753<br />4852<br />4951<br />5050<br />5149<br />5248<br />5347</pre> | |
</td> | </td> | ||
<td style="text-align:left;"> | <td style="text-align:left;"> | ||
- | + | <pre>ATC CGG ATA TAG TTC CTC CTT TCA GCA AAA AAC CCC TCA AGA CCC GTT TAG AGG CCC CAA GGG GTT ATG CTA GTT ATT GCT CAG CGG TGG CAG CAG CCA <br />ACT CAG CTT CCT TTC GGG CTT TGT TAG CAG CCG GAT CTC AGT GGT GGT GGT GGT GGT GCT CGA GTG CGG CCG CAA GCT TGT CGA CGG AGC TCG AAT TCG <br />GAT CCG CGA CCC ATT TGC TGT CCA CCA GTC ATG CTA GCC ATA TGT ATA TCT CCT TCT TAA AGT TAA ACA AAA TTA TTT CTA GAG GGG AAT TGT TAT CCG <br />CTC ACA ATT CCC CTA TAG TGA GTC GTA TTA ATT TCG CGG GAT CGA GAT CTC GAT CCT CTA CGC CGG ACG CAT CGT GGC CGG CAT CAC CGG CGC CAC AGG <br />TGC GGT TGC TGG CGC CTA TAT CGC CGA CAT CAC CGA TGG GGA AGA TCG GGC TCG CCA CTT CGG GCT CAT GAG CGC TTG TTT CGG CGT GGG TAT GGT GGC <br />AGG CCC CGT GGC CGG GGG ACT GTT GGG CGC CAT CTC CTT GCA TGC ACC ATT CCT TGC GGC GGC GGT GCT CAA CGG CCT CAA CCT ACT ACT GGG CTG CTT <br />CCT AAT GCA GGA GTC GCA TAA GGG AGA GCG TCG AGA TCC CGG ACA CCA TCG AAT GGC GCA AAA CCT TTC GCG GTA TGG CAT GAT AGC GCC CGG AAG AGA <br />GTC AAT TCA GGG TGG TGA ATG TGA AAC CAG TAA CGT TAT ACG ATG TCG CAG AGT ATG CCG GTG TCT CTT ATC AGA CCG TTT CCC GCG TGG TGA ACC AGG <br />CCA GCC ACG TTT CTG CGA AAA CGC GGG AAA AAG TGG AAG CGG CGA TGG CGG AGC TGA ATT ACA TTC CCA ACC GCG TGG CAC AAC AAC TGG CGG GCA AAC <br />AGT CGT TGC TGA TTG GCG TTG CCA CCT CCA GTC TGG CCC TGC ACG CGC CGT CGC AAA TTG TCG CGG CGA TTA AAT CTC GCG CCG ATC AAC TGG GTG CCA <br />GCG TGG TGG TGT CGA TGG TAG AAC GAA GCG GCG TCG AAG CCT GTA AAG CGG CGG TGC ACA ATC TTC TCG CGC AAC GCG TCA GTG GGC TGA TCA TTA ACT <br />ATC CGC TGG ATG ACC AGG ATG CCA TTG CTG TGG AAG CTG CCT GCA CTA ATG TTC CGG CGT TAT TTC TTG ATG TCT CTG ACC AGA CAC CCA TCA ACA GTA <br />TTA TTT TCT CCC ATG AAG ACG GTA CGC GAC TGG GCG TGG AGC ATC TGG TCG CAT TGG GTC ACC AGC AAA TCG CGC TGT TAG CGG GCC CAT TAA GTT CTG <br />TCT CGG CGC GTC TGC GTC TGG CTG GCT GGC ATA AAT ATC TCA CTC GCA ATC AAA TTC AGC CGA TAG CGG AAC GGG AAG GCG ACT GGA GTG CCA TGT CCG <br />GTT TTC AAC AAA CCA TGC AAA TGC TGA ATG AGG GCA TCG TTC CCA CTG CGA TGC TGG TTG CCA ACG ATC AGA TGG CGC TGG GCG CAA TGC GCG CCA TTA <br />CCG AGT CCG GGC TGC GCG TTG GTG CGG ATA TCT CGG TAG TGG GAT ACG ACG ATA CCG AAG ACA GCT CAT GTT ATA TCC CGC CGT TAA CCA CCA TCA AAC <br />AGG ATT TTC GCC TGC TGG GGC AAA CCA GCG TGG ACC GCT TGC TGC AAC TCT CTC AGG GCC AGG CGG TGA AGG GCA ATC AGC TGT TGC CCG TCT CAC TGG <br />TGA AAA GAA AAA CCA CCC TGG CGC CCA ATA CGC AAA CCG CCT CTC CCC GCG CGT TGG CCG ATT CAT TAA TGC AGC TGG CAC GAC AGG TTT CCC GAC TGG <br />AAA GCG GGC AGT GAG CGC AAC GCA ATT AAT GTA AGT TAG CTC ACT CAT TAG GCA CCG GGA TCT CGA CCG ATG CCC TTG AGA GCC TTC AAC CCA GTC AGC <br />TCC TTC CGG TGG GCG CGG GGC ATG ACT ATC GTC GCC GCA CTT ATG ACT GTC TTC TTT ATC ATG CAA CTC GTA GGA CAG GTG CCG GCA GCG CTC TGG GTC <br />ATT TTC GGC GAG GAC CGC TTT CGC TGG AGC GCG ACG ATG ATC GGC CTG TCG CTT GCG GTA TTC GGA ATC TTG CAC GCC CTC GCT CAA GCC TTC GTC ACT <br />GGT CCC GCC ACC AAA CGT TTC GGC GAG AAG CAG GCC ATT ATC GCC GGC ATG GCG GCC CCA CGG GTG CGC ATG ATC GTG CTC CTG TCG TTG AGG ACC CGG <br />CTA GGC TGG CGG GGT TGC CTT ACT GGT TAG CAG AAT GAA TCA CCG ATA CGC GAG CGA ACG TGA AGC GAC TGC TGC TGC AAA ACG TCT GCG ACC TGA GCA <br />ACA ACA TGA ATG GTC TTC GGT TTC CGT GTT TCG TAA AGT CTG GAA ACG CGG AAG TCA GCG CCC TGC ACC ATT ATG TTC CGG ATC TGC ATC GCA GGA TGC <br />TGC TGG CTA CCC TGT GGA ACA CCT ACA TCT GTA TTA ACG AAG CGC TGG CAT TGA CCC TGA GTG ATT TTT CTC TGG TCC CGC CGC ATC CAT ACC GCC AGT <br />TGT TTA CCC TCA CAA CGT TCC AGT AAC CGG GCA TGT TCA TCA TCA GTA ACC CGT ATC GTG AGC ATC CTC TCT CGT TTC ATC GGT ATC ATT ACC CCC ATG <br />AAC AGA AAT CCC CCT TAC ACG GAG GCA TCA GTG ACC AAA CAG GAA AAA ACC GCC CTT AAC ATG GCC CGC TTT ATC AGA AGC CAG ACA TTA ACG CTT CTG <br />GAG AAA CTC AAC GAG CTG GAC GCG GAT GAA CAG GCA GAC ATC TGT GAA TCG CTT CAC GAC CAC GCT GAT GAG CTT TAC CGC AGC TGC CTC GCG CGT TTC <br />GGT GAT GAC GGT GAA AAC CTC TGA CAC ATG CAG CTC CCG GAG ACG GTC ACA GCT TGT CTG TAA GCG GAT GCC GGG AGC AGA CAA GCC CGT CAG GGC GCG <br />TCA GCG GGT GTT GGC GGG TGT CGG GGC GCA GCC ATG ACC CAG TCA CGT AGC GAT AGC GGA GTG TAT ACT GGC TTA ACT ATG CGG CAT CAG AGC AGA TTG <br />TAC TGA GAG TGC ACC ATA TAT GCG GTG TGA AAT ACC GCA CAG ATG CGT AAG GAG AAA ATA CCG CAT CAG GCG CTC TTC CGC TTC CTC GCT CAC TGA CTC <br />GCT GCG CTC GGT CGT TCG GCT GCG GCG AGC GGT ATC AGC TCA CTC AAA GGC GGT AAT ACG GTT ATC CAC AGA ATC AGG GGA TAA CGC AGG AAA GAA CAT <br />GTG AGC AAA AGG CCA GCA AAA GGC CAG GAA CCG TAA AAA GGC CGC GTT GCT GGC GTT TTT CCA TAG GCT CCG CCC CCC TGA CGA GCA TCA CAA AAA TCG <br />ACG CTC AAG TCA GAG GTG GCG AAA CCC GAC AGG ACT ATA AAG ATA CCA GGC GTT TCC CCC TGG AAG CTC CCT CGT GCG CTC TCC TGT TCC GAC CCT GCC <br />GCT TAC CGG ATA CCT GTC CGC CTT TCT CCC TTC GGG AAG CGT GGC GCT TTC TCA TAG CTC ACG CTG TAG GTA TCT CAG TTC GGT GTA GGT CGT TCG CTC <br />CAA GCT GGG CTG TGT GCA CGA ACC CCC CGT TCA GCC CGA CCG CTG CGC CTT ATC CGG TAA CTA TCG TCT TGA GTC CAA CCC GGT AAG ACA CGA CTT ATC <br />GCC ACT GGC AGC AGC CAC TGG TAA CAG GAT TAG CAG AGC GAG GTA TGT AGG CGG TGC TAC AGA GTT CTT GAA GTG GTG GCC TAA CTA CGG CTA CAC TAG <br />AAG GAC AGT ATT TGG TAT CTG CGC TCT GCT GAA GCC AGT TAC CTT CGG AAA AAG AGT TGG TAG CTC TTG ATC CGG CAA ACA AAC CAC CGC TGG TAG CGG <br />TGG TTT TTT TGT TTG CAA GCA GCA GAT TAC GCG CAG AAA AAA AGG ATC TCA AGA AGA TCC TTT GAT CTT TTC TAC GGG GTC TGA CGC TCA GTG GAA CGA <br />AAA CTC ACG TTA AGG GAT TTT GGT CAT GAG ATT ATC AAA AAG GAT CTT CAC CTA GAT CCT TTT AAA TTA AAA ATG AAG TTT TAA ATC AAT CTA AAG TAT <br />ATA TGA GTA AAC TTG GTC TGA CAG TTA CCA ATG CTT AAT CAG TGA GGC ACC TAT CTC AGC GAT CTG TCT ATT TCG TTC ATC CAT AGT TGC CTG ACT CCC <br />CGT CGT GTA GAT AAC TAC GAT ACG GGA GGG CTT ACC ATC TGG CCC CAG TGC TGC AAT GAT ACC GCG AGA CCC ACG CTC ACC GGC TCC AGA TTT ATC AGC <br />AAT AAA CCA GCC AGC CGG AAG GGC CGA GCG CAG AAG TGG TCC TGC AAC TTT ATC CGC CTC CAT CCA GTC TAT TAA TTG TTG CCG GGA AGC TAG AGT AAG <br />TAG TTC GCC AGT TAA TAG TTT GCG CAA CGT TGT TGC CAT TGC TGC AGG CAT CGT GGT GTC ACG CTC GTC GTT TGG TAT GGC TTC ATT CAG CTC CGG TTC <br />CCA ACG ATC AAG GCG AGT TAC ATG ATC CCC CAT GTT GTG CAA AAA AGC GGT TAG CTC CTT CGG TCC TCC GAT CGT TGT CAG AAG TAA GTT GGC CGC AGT <br />GTT ATC ACT CAT GGT TAT GGC AGC ACT GCA TAA TTC TCT TAC TGT CAT GCC ATC CGT AAG ATG CTT TTC TGT GAC TGG TGA GTA CTC AAC CAA GTC ATT <br />CTG AGA ATA GTG TAT GCG GCG ACC GAG TTG CTC TTG CCC GGC GTC AAT ACG GGA TAA TAC CGC GCC ACA TAG CAG AAC TTT AAA AGT GCT CAT CAT TGG <br />AAA ACG TTC TTC GGG GCG AAA ACT CTC AAG GAT CTT ACC GCT GTT GAG ATC CAG TTC GAT GTA ACC CAC TCG TGC ACC CAA CTG ATC TTC AGC ATC TTT <br />TAC TTT CAC CAG CGT TTC TGG GTG AGC AAA AAC AGG AAG GCA AAA TGC CGC AAA AAA GGG AAT AAG GGC GAC ACG GAA ATG TTG AAT ACT CAT ACT CTT <br />CCT TTT TCA ATA TTA TTG AAG CAT TTA TCA GGG TTA TTG TCT CAT GAG CGG ATA CAT ATT TGA ATG TAT TTA GAA AAA TAA ACA AAT AGG GGT TCC GCG <br />CAC ATT TCC CCG AAA AGT GCC ACC TGA AAT TGT AAA CGT TAA TAT TTT GTT AAA ATT CGC GTT AAA TTT TTG TTA AAT CAG CTC ATT TTT TAA CCA ATA <br />GGC CGA AAT CGG CAA AAT CCC TTA TAA ATC AAA AGA ATA GAC CGA GAT AGG GTT GAG TGT TGT TCC AGT TTG GAA CAA GAG TCC ACT ATT AAA GAA CGT <br />GGA CTC CAA CGT CAA AGG GCG AAA AAC CGT CTA TCA GGG CGA TGG CCC ACT ACG TGA ACC ATC ACC CTA ATC AAG TTT TTT GGG GTC GAG GTG CCG TAA <br />AGC ACT AAA TCG GAA CCC TAA AGG GAG CCC CCG ATT TAG AGC TTG ACG GGG AAA GCC GGC GAA CGT GGC GAG AAA GGA AGG GAA GAA AGC GAA AGG AGC <br />GGG CGC TAG GGC GCT GGC AAG TGT AGC GGT CAC GCT GCG CGT AAC CAC CAC ACC CGC CGC GCT TAA TGC GCC GCT ACA GGG CGC GTC CCA TTC GCC A</pre> | |
</td> | </td> | ||
</tr> | </tr> | ||
</table></font> | </table></font> | ||
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<br> | <br> | ||
<h4><a name="pSB1C3" href="http://parts.igem.org/Part:pSB1C3">pSB1C3 Part-only sequence (2070bp)</a></h4> | <h4><a name="pSB1C3" href="http://parts.igem.org/Part:pSB1C3">pSB1C3 Part-only sequence (2070bp)</a></h4> | ||
- | <p class="widthCorrect"><font size="2">< | + | <p class="widthCorrect">...</p> |
- | + | <font size="2"><table class="table table-striped table-bordered"> | |
- | + | <tr> | |
- | + | <td style="text-align:right;"> | |
- | + | <pre>1<br />100<br />199<br />298<br />397<br />496<br />595<br />694<br />793<br />892<br />991<br />1090<br />1189<br />1288<br />1387<br />1486<br />1585<br />1684<br />1783<br />1882<br />1981</pre> | |
- | + | </td> | |
- | + | <td style="text-align:left;"> | |
- | + | <pre>TAC TAG TAG CGG CCG CTG CAG TCC GGC AAA AAA GGG CAA GGT GTC ACC ACC CTG CCC TTT TTC TTT AAA ACC GAA AAG ATT ACT TCG CGT TAT GCA GGC <br />TTC CTC GCT CAC TGA CTC GCT GCG CTC GGT CGT TCG GCT GCG GCG AGC GGT ATC AGC TCA CTC AAA GGC GGT AAT ACG GTT ATC CAC AGA ATC AGG GGA <br />TAA CGC AGG AAA GAA CAT GTG AGC AAA AGG CCA GCA AAA GGC CAG GAA CCG TAA AAA GGC CGC GTT GCT GGC GTT TTT CCA CAG GCT CCG CCC CCC TGA <br />CGA GCA TCA CAA AAA TCG ACG CTC AAG TCA GAG GTG GCG AAA CCC GAC AGG ACT ATA AAG ATA CCA GGC GTT TCC CCC TGG AAG CTC CCT CGT GCG CTC <br />TCC TGT TCC GAC CCT GCC GCT TAC CGG ATA CCT GTC CGC CTT TCT CCC TTC GGG AAG CGT GGC GCT TTC TCA TAG CTC ACG CTG TAG GTA TCT CAG TTC <br />GGT GTA GGT CGT TCG CTC CAA GCT GGG CTG TGT GCA CGA ACC CCC CGT TCA GCC CGA CCG CTG CGC CTT ATC CGG TAA CTA TCG TCT TGA GTC CAA CCC <br />GGT AAG ACA CGA CTT ATC GCC ACT GGC AGC AGC CAC TGG TAA CAG GAT TAG CAG AGC GAG GTA TGT AGG CGG TGC TAC AGA GTT CTT GAA GTG GTG GCC <br />TAA CTA CGG CTA CAC TAG AAG AAC AGT ATT TGG TAT CTG CGC TCT GCT GAA GCC AGT TAC CTT CGG AAA AAG AGT TGG TAG CTC TTG ATC CGG CAA ACA <br />AAC CAC CGC TGG TAG CGG TGG TTT TTT TGT TTG CAA GCA GCA GAT TAC GCG CAG AAA AAA AGG ATC TCA AGA AGA TCC TTT GAT CTT TTC TAC GGG GTC <br />TGA CGC TCA GTG GAA CGA AAA CTC ACG TTA AGG GAT TTT GGT CAT GAG ATT ATC AAA AAG GAT CTT CAC CTA GAT CCT TTT AAA TTA AAA ATG AAG TTT <br />TAA ATC AAT CTA AAG TAT ATA TGA GTA AAC TTG GTC TGA CAG CTC GAG GCT TGG ATT CTC ACC AAT AAA AAA CGC CCG GCG GCA ACC GAG CGT TCT GAA <br />CAA ATC CAG ATG GAG TTC TGA GGT CAT TAC TGG ATC TAT CAA CAG GAG TCC AAG CGA GCT CGA TAT CAA ATT ACG CCC CGC CCT GCC ACT CAT CGC AGT <br />ACT GTT GTA ATT CAT TAA GCA TTC TGC CGA CAT GGA AGC CAT CAC AAA CGG CAT GAT GAA CCT GAA TCG CCA GCG GCA TCA GCA CCT TGT CGC CTT GCG <br />TAT AAT ATT TGC CCA TGG TGA AAA CGG GGG CGA AGA AGT TGT CCA TAT TGG CCA CGT TTA AAT CAA AAC TGG TGA AAC TCA CCC AGG GAT TGG CTG AGA <br />CGA AAA ACA TAT TCT CAA TAA ACC CTT TAG GGA AAT AGG CCA GGT TTT CAC CGT AAC ACG CCA CAT CTT GCG AAT ATA TGT GTA GAA ACT GCC GGA AAT <br />CGT CGT GGT ATT CAC TCC AGA GCG ATG AAA ACG TTT CAG TTT GCT CAT GGA AAA CGG TGT AAC AAG GGT GAA CAC TAT CCC ATA TCA CCA GCT CAC CGT <br />CTT TCA TTG CCA TAC GAA ATT CCG GAT GAG CAT TCA TCA GGC GGG CAA GAA TGT GAA TAA AGG CCG GAT AAA ACT TGT GCT TAT TTT TCT TTA CGG TCT <br />TTA AAA AGG CCG TAA TAT CCA GCT GAA CGG TCT GGT TAT AGG TAC ATT GAG CAA CTG ACT GAA ATG CCT CAA AAT GTT CTT TAC GAT GCC ATT GGG ATA <br />TAT CAA CGG TGG TAT ATC CAG TGA TTT TTT TCT CCA TTT TAG CTT CCT TAG CTC CTG AAA ATC TCG ATA ACT CAA AAA ATA CGC CCG GTA GTG ATC TTA <br />TTT CAT TAT GGT GAA AGT TGG AAC CTC TTA CGT GCC CGA TCA ACT CGA GTG CCA CCT GAC GTC TAA GAA ACC ATT ATT ATC ATG ACA TTA ACC TAT AAA <br />AAT AGG CGT ATC ACG AGG CAG AAT TTC AGA TAA AAA AAA TCC TTA GCT TTC GCT AAG GAT GAT TTC TGG AAT TCG CGG CCG CTT CTA GAG </pre> | |
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- | + | </tr> | |
- | + | </table></font> | |
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<br> | <br> | ||
<h4><a name="pSB1A3" href="http://parts.igem.org/Part:pSB1A3">pSB1A3 Part-only sequence (2155bp)</a></h4> | <h4><a name="pSB1A3" href="http://parts.igem.org/Part:pSB1A3">pSB1A3 Part-only sequence (2155bp)</a></h4> | ||
- | <p class="widthCorrect"><font size="2">< | + | <p class="widthCorrect">...</p> |
- | + | <font size="2"><table class="table table-striped table-bordered"> | |
- | + | <tr> | |
- | + | <td style="text-align:right;"> | |
- | + | <pre>1<br />100<br />199<br />298<br />397<br />496<br />595<br />694<br />793<br />892<br />991<br />1090<br />1189<br />1288<br />1387<br />1486<br />1585<br />1684<br />1783<br />1882<br />1981<br />2080</pre> | |
- | + | </td> | |
- | + | <td style="text-align:left;"> | |
- | + | <pre>TAC TAG TAG CGG CCG CTG CAG TCC GGC AAA AAA GGG CAA GGT GTC ACC ACC CTG CCC TTT TTC TTT AAA ACC GAA AAG ATT ACT TCG CGT TAT GCA GGC <br />TTC CTC GCT CAC TGA CTC GCT GCG CTC GGT CGT TCG GCT GCG GCG AGC GGT ATC AGC TCA CTC AAA GGC GGT AAT ACG GTT ATC CAC AGA ATC AGG GGA <br />TAA CGC AGG AAA GAA CAT GTG AGC AAA AGG CCA GCA AAA GGC CAG GAA CCG TAA AAA GGC CGC GTT GCT GGC GTT TTT CCA CAG GCT CCG CCC CCC TGA <br />CGA GCA TCA CAA AAA TCG ACG CTC AAG TCA GAG GTG GCG AAA CCC GAC AGG ACT ATA AAG ATA CCA GGC GTT TCC CCC TGG AAG CTC CCT CGT GCG CTC <br />TCC TGT TCC GAC CCT GCC GCT TAC CGG ATA CCT GTC CGC CTT TCT CCC TTC GGG AAG CGT GGC GCT TTC TCA TAG CTC ACG CTG TAG GTA TCT CAG TTC <br />GGT GTA GGT CGT TCG CTC CAA GCT GGG CTG TGT GCA CGA ACC CCC CGT TCA GCC CGA CCG CTG CGC CTT ATC CGG TAA CTA TCG TCT TGA GTC CAA CCC <br />GGT AAG ACA CGA CTT ATC GCC ACT GGC AGC AGC CAC TGG TAA CAG GAT TAG CAG AGC GAG GTA TGT AGG CGG TGC TAC AGA GTT CTT GAA GTG GTG GCC <br />TAA CTA CGG CTA CAC TAG AAG AAC AGT ATT TGG TAT CTG CGC TCT GCT GAA GCC AGT TAC CTT CGG AAA AAG AGT TGG TAG CTC TTG ATC CGG CAA ACA <br />AAC CAC CGC TGG TAG CGG TGG TTT TTT TGT TTG CAA GCA GCA GAT TAC GCG CAG AAA AAA AGG ATC TCA AGA AGA TCC TTT GAT CTT TTC TAC GGG GTC <br />TGA CGC TCA GTG GAA CGA AAA CTC ACG TTA AGG GAT TTT GGT CAT GAG ATT ATC AAA AAG GAT CTT CAC CTA GAT CCT TTT AAA TTA AAA ATG AAG TTT <br />TAA ATC AAT CTA AAG TAT ATA TGA GTA AAC TTG GTC TGA CAG TTA CCA ATG CTT AAT CAG TGA GGC ACC TAT CTC AGC GAT CTG TCT ATT TCG TTC ATC <br />CAT AGT TGC CTG ACT CCC CGT CGT GTA GAT AAC TAC GAT ACG GGA GGG CTT ACC ATC TGG CCC CAG TGC TGC AAT GAT ACC GCG AGA CCC ACG CTC ACC <br />GGC TCC AGA TTT ATC AGC AAT AAA CCA GCC AGC CGG AAG GGC CGA GCG CAG AAG TGG TCC TGC AAC TTT ATC CGC CTC CAT CCA GTC TAT TAA TTG TTG <br />CCG GGA AGC TAG AGT AAG TAG TTC GCC AGT TAA TAG TTT GCG CAA CGT TGT TGC CAT TGC TAC AGG CAT CGT GGT GTC ACG CTC GTC GTT TGG TAT GGC <br />TTC ATT CAG CTC CGG TTC CCA ACG ATC AAG GCG AGT TAC ATG ATC CCC CAT GTT GTG CAA AAA AGC GGT TAG CTC CTT CGG TCC TCC GAT CGT TGT CAG <br />AAG TAA GTT GGC CGC AGT GTT ATC ACT CAT GGT TAT GGC AGC ACT GCA TAA TTC TCT TAC TGT CAT GCC ATC CGT AAG ATG CTT TTC TGT GAC TGG TGA <br />GTA CTC AAC CAA GTC ATT CTG AGA ATA GTG TAT GCG GCG ACC GAG TTG CTC TTG CCC GGC GTC AAT ACG GGA TAA TAC CGC GCC ACA TAG CAG AAC TTT <br />AAA AGT GCT CAT CAT TGG AAA ACG TTC TTC GGG GCG AAA ACT CTC AAG GAT CTT ACC GCT GTT GAG ATC CAG TTC GAT ATA ACC CAC TCG TGC ACC CAA <br />CTG ATC TTC AGC ATC TTT TAC TTT CAC CAG CGT TTC TGG GTG AGC AAA AAC AGG AAG GCA AAA TGC CGC AAA AAA GGG AAT AAG GGC GAC ACG GAA ATG <br />TTG AAT ACT CAT ACT CTT CCT TTT TCA ATA TTA TTG AAG CAT TTA TCA GGG TTA TTG TCT CAT GAG CGG ATA CAT ATT TGA ATG TAT TTA GAA AAA TAA <br />ACA AAT AGG GGT TCC GCG CAC ATT TCC CCG AAA AGT GCC ACC TGA CGT CTA AGA AAC CAT TAT TAT CAT GAC ATT AAC CTA TAA AAA TAG GCG TAT CAC <br />GAG GCA GAA TTT CAG ATA AAA AAA ATC CTT AGC TTT CGC TAA GGA TGA TTT CTG GAA TTC GCG GCC GCT TCT AGA G</pre> | |
- | + | </td> | |
- | + | </tr> | |
- | + | </table></font> | |
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<br> | <br> | ||
<h4><a name="pSB1K3" href="http://parts.igem.org/Part:pSB1K3">pSB1K3 Part-only sequence (2204bp)</a></h4> | <h4><a name="pSB1K3" href="http://parts.igem.org/Part:pSB1K3">pSB1K3 Part-only sequence (2204bp)</a></h4> | ||
- | <p class="widthCorrect"><font size="2">< | + | <p class="widthCorrect">...</p> |
- | + | <font size="2"><table class="table table-striped table-bordered"> | |
- | + | <tr> | |
- | + | <td style="text-align:right;"> | |
- | + | <pre>1<br />100<br />199<br />298<br />397<br />496<br />595<br />694<br />793<br />892<br />991<br />1090<br />1189<br />1288<br />1387<br />1486<br />1585<br />1684<br />1783<br />1882<br />1981<br />2080<br />2179</pre> | |
- | + | </td> | |
- | + | <td style="text-align:left;"> | |
- | + | <pre>TAC TAG TAG CGG CCG CTG CAG TCC GGC AAA AAA GGG CAA GGT GTC ACC ACC CTG CCC TTT TTC TTT AAA ACC GAA AAG ATT ACT TCG CGT TAT GCA GGC <br />TTC CTC GCT CAC TGA CTC GCT GCG CTC GGT CGT TCG GCT GCG GCG AGC GGT ATC AGC TCA CTC AAA GGC GGT AAT ACG GTT ATC CAC AGA ATC AGG GGA <br />TAA CGC AGG AAA GAA CAT GTG AGC AAA AGG CCA GCA AAA GGC CAG GAA CCG TAA AAA GGC CGC GTT GCT GGC GTT TTT CCA CAG GCT CCG CCC CCC TGA <br />CGA GCA TCA CAA AAA TCG ACG CTC AAG TCA GAG GTG GCG AAA CCC GAC AGG ACT ATA AAG ATA CCA GGC GTT TCC CCC TGG AAG CTC CCT CGT GCG CTC <br />TCC TGT TCC GAC CCT GCC GCT TAC CGG ATA CCT GTC CGC CTT TCT CCC TTC GGG AAG CGT GGC GCT TTC TCA TAG CTC ACG CTG TAG GTA TCT CAG TTC <br />GGT GTA GGT CGT TCG CTC CAA GCT GGG CTG TGT GCA CGA ACC CCC CGT TCA GCC CGA CCG CTG CGC CTT ATC CGG TAA CTA TCG TCT TGA GTC CAA CCC <br />GGT AAG ACA CGA CTT ATC GCC ACT GGC AGC AGC CAC TGG TAA CAG GAT TAG CAG AGC GAG GTA TGT AGG CGG TGC TAC AGA GTT CTT GAA GTG GTG GCC <br />TAA CTA CGG CTA CAC TAG AAG AAC AGT ATT TGG TAT CTG CGC TCT GCT GAA GCC AGT TAC CTT CGG AAA AAG AGT TGG TAG CTC TTG ATC CGG CAA ACA <br />AAC CAC CGC TGG TAG CGG TGG TTT TTT TGT TTG CAA GCA GCA GAT TAC GCG CAG AAA AAA AGG ATC TCA AGA AGA TCC TTT GAT CTT TTC TAC GGG GTC <br />TGA CGC TCA GTG GAA CGA AAA CTC ACG TTA AGG GAT TTT GGT CAT GAG ATT ATC AAA AAG GAT CTT CAC CTA GAT CCT TTT AAA TTA AAA ATG AAG TTT <br />TAA ATC AAT CTA AAG TAT ATA TGA GTA AAC TTG GTC TGA CAG CTC GAG TCC CGT CAA GTC AGC GTA ATG CTC TGC CAG TGT TAC AAC CAA TTA ACC AAT <br />TCT GAT TAG AAA AAC TCA TCG AGC ATC AAA TGA AAC TGC AAT TTA TTC ATA TCA GGA TTA TCA ATA CCA TAT TTT TGA AAA AGC CGT TTC TGT AAT GAA <br />GGA GAA AAC TCA CCG AGG CAG TTC CAT AGG ATG GCA AGA TCC TGG TAT CGG TCT GCG ATT CCG ACT CGT CCA ACA TCA ATA CAA CCT ATT AAT TTC CCC <br />TCG TCA AAA ATA AGG TTA TCA AGT GAG AAA TCA CCA TGA GTG ACG ACT GAA TCC GGT GAG AAT GGC AAA AGC TTA TGC ATT TCT TTC CAG ACT TGT TCA <br />ACA GGC CAG CCA TTA CGC TCG TCA TCA AAA TCA CTC GCA TCA ACC AAA CCG TTA TTC ATT CGT GAT TGC GCC TGA GCG AGA CGA AAT ACG CGA TCG CTG <br />TTA AAA GGA CAA TTA CAA ACA GGA ATC GAA TGC AAC CGG CGC AGG AAC ACT GCC AGC GCA TCA ACA ATA TTT TCA CCT GAA TCA GGA TAT TCT TCT AAT <br />ACC TGG AAT GCT GTT TTC CCG GGG ATC GCA GTG GTG AGT AAC CAT GCA TCA TCA GGA GTA CGG ATA AAA TGC TTG ATG GTC GGA AGA GGC ATA AAT TCC <br />GTC AGC CAG TTT AGT CTG ACC ATC TCA TCT GTA ACA TCA TTG GCA ACG CTA CCT TTG CCA TGT TTC AGA AAC AAC TCT GGC GCA TCG GGC TTC CCA TAC <br />AAT CGA TAG ATT GTC GCA CCT GAT TGC CCG ACA TTA TCG CGA GCC CAT TTA TAC CCA TAT AAA TCA GCA TCC ATG TTG GAA TTT AAT CGC GGC CTG GAG <br />CAA GAC GTT TCC CGT TGA ATA TGG CTC ATA ACA CCC CTT GTA TTA CTG TTT ATG TAA GCA GAC AGT TTT ATT GTT CAT GAT GAT ATA TTT TTA TCT TGT <br />GCA ATG TAA CAT CAG AGA TTT TGA GAC ACA ACG TGG CTT TGT TGA ATA AAT CGA ACT TTT GCT GAG TTG AAG GAT CAG CTC GAG TGC CAC CTG ACG TCT <br />AAG AAA CCA TTA TTA TCA TGA CAT TAA CCT ATA AAA ATA GGC GTA TCA CGA GGC AGA ATT TCA GAT AAA AAA AAT CCT TAG CTT TCG CTA AGG ATG ATT <br />TCT GGA ATT CGC GGC CGC TTC TAG AG</pre> | |
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<h3>BioBricks from iGEM Parts Registry Distributions</h3> | <h3>BioBricks from iGEM Parts Registry Distributions</h3> | ||
<h4><a name="J04450" href="http://parts.igem.org/Part:BBa_J04450">[Test use] J04450 Part-only sequence (1069bp)</a></h4> | <h4><a name="J04450" href="http://parts.igem.org/Part:BBa_J04450">[Test use] J04450 Part-only sequence (1069bp)</a></h4> | ||
+ | <p class="widthCorrect">...</p> | ||
+ | <font size="2"><table class="table table-striped table-bordered"> | ||
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+ | </td> | ||
+ | </tr> | ||
+ | </table></font> | ||
+ | <br> | ||
<p class="widthCorrect"><font size="2"><code>caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaat | <p class="widthCorrect"><font size="2"><code>caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaat | ||
taatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca | taatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca |
Revision as of 22:19, 14 October 2014
Summary
For ease of reference, the sequences for (1) our BioBrick Gene Designs, (2) Plasmid / Vector Backbones, and (3) BioBricks that we have used from that iGEM Registry Distribution, have been provided below. Clicking on the Gene/Plasmid/BioBrick headers will take you to pages describing the part in more detail and the source of the sequences.
Note: format is a little horrendous, will change to all CAPS, and at a set width (70-75 char), and add "br" for all later.
BioBrick Designs for Our Genes
[New] BBa_K1336000 / AzoR Part-only sequence (612bp)
Sequence taken from Lisbon.
1 |
ATG AAA CTG TTG CAC ATC GAT TCG AGC ATC CTG GGC GAC AAT TCC GCC TCG CGT CAG CTG AGC CGT GAA GTG GTC GAA GCC TGG AAG GCT GCA GAC CCA |
[New] BBa_K1336001 / AzoR 1B6 (heat-stable AzoR mutant) Part-only sequence (612bp)
Sequence given from Lisbon group directly.
1 |
ATG AAA CTG TTG CAC ATC GAT TCG AGC ATC CTG GGC GAC AAT TCC GCC TCG CGC CAG CTG AGC CGT GAA GTG GTC GAA GCC TGG AAG GCT GCA GAC CCA |
[Proposed] BBa_K1336002 / CotA Part-only sequence (1542bp)
Sequence given from Lisbon group directly.
1 |
ATG ACA CTT GAA AAA TTT GTG GAT GCT CTC CCA ATC CCA GAT ACA CTA AAG CCA GTA CAG CAA TCA AAA GAA AAA ACA TAC TAC GAA GTC ACC ATG GAG |
[New] BBa_K1336003 / BsDyP Part-only sequence (1251bp)
Sequence given from Lisbon group directly.
1 |
ATG AGC GAT GAA CAG AAA AAG CCA GAA CAA ATT CAC AGA CGG GAC ATT TTA AAA TGG GGA GCG ATG GCG GGG GCA GCC GTT GCG ATC GGT GCC AGC GGT |
[Proposed] BBa_K1336004 / PpDyP Part-only sequence (864bp)
Sequence taken from Lisbon.
1 |
ATG CCG TTC CAG CAA GGT CTG CTT GCC ACC CCG GTG CCG GCC CAC GCC CGT CAC CTG TTC TTC ACC CTG CAG TCG CCC GAG GCG TTG CCT GCC GCG CTG |
[Improvement] BBa_K500000 / LiP Part-only sequence (1116bp)
Sequence taken from the initial page; not currently showing our improvements.
1 |
ATG GCT TTT AAA CAA TTA TTC GCC GCT ATT TCC TTG GCT TTG TCT TTG TCT GCT GCT AAT GCT GCT GCT GTT ATT GAA AAA AGA GCT ACT TGT TCC AAC |
[Improvement] BBa_K729006 / CueO Part-only sequence (1612bp)
Sequence taken from the initial page; not currently showing our improvements.
1 |
TTG ACA GCT AGC TCA GTC CTA GGT ATA ATG CTA GCT ACT AGA GAA AGA GGA GAA ATA CTA GAT GCA ACG TCG TGA TTT CTT AAA ATA TTC CGT CGC GCT |
[New] BBa_K1336005 / ispB Part-only sequence (562bp)
The first sequence below shows the "sense" ispB gene, but we use the second sequence, the Reverse Complement to design primers to produce an antisense fragment for gene knockdown (i.e. as RNAi).
"Sense" ispB sequence (972bp)
Black = region for PCR. Underlined CTG CAG = illegal PstI restriction site.
1 |
ATG AAT TTA GAA AAA ATC AAT GAG TTA ACC GCG CAA GAT ATG GCG GGT GTT AAT GCG GCA ATC CTT GAG CAG CTT AAT TCC GAC GTC CAA CTG ATC AAT |
"Antisense" ispB sequence (972bp)
To create the RNAi/antisense fragment, we first get the reverse complement of the full ispB gene, before designing the primers to amplify the black region.
1 |
TTA ACG ATC GCG TTG AAC AGC GAT GTG CGC GAG GCC GAT GAG TGC TTC TCG CCA AGG GGT GTC CGG GAG CAC CTG TAA CGC TGC GAT GGC TTT GTC TGC |
"Antisense" RNAi ispB sequence PCR fragment (562bp)
...
1 |
G GCC TTT CTC CTC CTC CGG CGT ACA GCC AGC CAG AAT CCC GGA ACA CTG CGC GGC AGC CTC AAA CAG ACG CGC GGT TTT GCT ATA GAT AAC GCG CAT |
[New] BBa_K1336006 / LacI Expression Cassette + ispB Part-only sequence (Xbp)
LacI EC + K1336005.
LacI EC + "Antisense" ispB Device sequence
1 |
LACIEC NEEDED + PREFIX NEEDED + TTA ACG ATC GCG TTG AAC AGC GAT GTG CGC GAG GCC GAT GAG TGC TTC TCG CCA AGG GGT GTC CGG GAG CAC CTG TAA CGC TGC GAT GGC TTT GTC TGC |
[New] BBa_K1336007 / LacI Expression Cassette + BsDyP Part-only sequence (XXXbp)
LacI EC + K1336003.
LacI EC + BsDyP Device sequence
1 |
LACIEC NEEDED + PREFIX NEEDED + [[BsDyP NEEDED]] + SUFFIX NEEDED |
Plasmid Backbone / Vectors
pET-21a (+) sequence (5443bp) [Link, see DT]
...
1 |
ATC CGG ATA TAG TTC CTC CTT TCA GCA AAA AAC CCC TCA AGA CCC GTT TAG AGG CCC CAA GGG GTT ATG CTA GTT ATT GCT CAG CGG TGG CAG CAG CCA |
pSB1C3 Part-only sequence (2070bp)
...
1 |
TAC TAG TAG CGG CCG CTG CAG TCC GGC AAA AAA GGG CAA GGT GTC ACC ACC CTG CCC TTT TTC TTT AAA ACC GAA AAG ATT ACT TCG CGT TAT GCA GGC |
pSB1A3 Part-only sequence (2155bp)
...
1 |
TAC TAG TAG CGG CCG CTG CAG TCC GGC AAA AAA GGG CAA GGT GTC ACC ACC CTG CCC TTT TTC TTT AAA ACC GAA AAG ATT ACT TCG CGT TAT GCA GGC |
pSB1K3 Part-only sequence (2204bp)
...
1 |
TAC TAG TAG CGG CCG CTG CAG TCC GGC AAA AAA GGG CAA GGT GTC ACC ACC CTG CCC TTT TTC TTT AAA ACC GAA AAG ATT ACT TCG CGT TAT GCA GGC |
BioBricks from iGEM Parts Registry Distributions
[Test use] J04450 Part-only sequence (1069bp)
...
caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaat
taatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca
tactagagaaagaggagaaatactagatggcttcctccgaagacgttatcaaagagttcatgcgtttcaaagttcgtatggaaggttccgttaacggtca
cgagttcgaaatcgaaggtgaaggtgaaggtcgtccgtacgaaggtacccagaccgctaaactgaaagttaccaaaggtggtccgctgccgttcgcttgg
gacatcctgtccccgcagttccagtacggttccaaagcttacgttaaacacccggctgacatcccggactacctgaaactgtccttcccggaaggtttca
aatgggaacgtgttatgaacttcgaagacggtggtgttgttaccgttacccaggactcctccctgcaagacggtgagttcatctacaaagttaaactgcg
tggtaccaacttcccgtccgacggtccggttatgcagaaaaaaaccatgggttgggaagcttccaccgaacgtatgtacccggaagacggtgctctgaaa
ggtgaaatcaaaatgcgtctgaaactgaaagacggtggtcactacgacgctgaagttaaaaccacctacatggctaaaaaaccggttcagctgccgggtg
cttacaaaaccgacatcaaactggacatcacctcccacaacgaagactacaccatcgttgaacagtacgaacgtgctgaaggtcgtcactccaccggtgc
ttaataacgctgatagtgctagtgtagatcgctactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgtt
gtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata
[Used] K314103 Part-only sequence (1638bp)
acgcgccctgtagcggcgcattaagcgcggcgggtgtggtggttacgcgcagcgtgaccgctacacttgccagcgccctagcgcccgctcctttcgcttt
cttcccttcctttctcgccacgttcgccggctttccccgtcaagctctaaatcgggggctccctttagggttccgatttagtgctttacggcacctcgac
cccaaaaaacttgattagggtgatggttcacgtagtgggccatcgccctgatagacggtttttcgccctttgacgttggagtccacgttctttaatagtg
gactcttgttccaaactggaacaacactcaaccctatctcggtctattcttttgatttataagggattttgccgatttcggcctattggttaaaaaatga
gctgatttaacaaaaatttaacgcgaattttaacaaaatattaacgtttacaatttactagaggtggtgaatgtgaaaccagtaacgttatacgatgtcg
cagagtatgccggtgtctcttatcagaccgtttcccgcgtggtgaaccaggccagccacgtttctgcgaaaacgcgggaaaaagtggaagcggcgatggc
ggagctgaattacattcccaaccgcgtggcacaacaactggcgggcaaacagtcgttgctgattggcgttgccacctccagtctggccctgcacgcgccg
tcgcaaattgtcgcggcgattaaatctcgcgccgatcaactgggtgccagcgtggtggtgtcgatggtagaacgaagcggcgtcgaagcctgtaaagcgg
cggtgcacaatcttctcgcgcaacgcgtcagtgggctgatcattaactatccgctggatgaccaggatgccattgctgtggaagctgcctgcactaatgt
tccggcgttatttcttgatgtctctgaccagacacccatcaacagtattattttctcccatgaagacggtacgcgactgggcgtggagcatctggtcgca
ttgggtcaccagcaaatcgcgctgttagcgggcccattaagttctgtctcggcgcgtctgcgtctggctggctggcataaatatctcactcgcaatcaaa
ttcagccgatagcggaacgggaaggcgactggagtgccatgtccggttttcaacaaaccatgcaaatgctgaatgagggcatcgttcccactgcgatgct
ggttgccaacgatcagatggcgctgggcgcaatgcgcgccattaccgagtccgggctgcgcgttggtgcggacatctcggtagtgggatacgacgatacc
gaagacagctcatgttatatcccgccgttaaccaccatcaaacaggattttcgcctgctggggcaaaccagcgtggaccgcttgctgcaactctctcagg
gccaggcggtgaagggcaatcagctgttgcccgtctcactggtgaaaagaaaaaccaccctggcgcccaatacgcaaaccgcctctccccgcgcgttggc
cgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgatactagagaattgtgagcggataacaattgacattgtgagcggat
aacaagatactgagcacatactagagaaagaggagaaa
[Test use] R0010 Part-only sequence (200bp)
caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaat
taatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca
[Not used] R0011 Part-only sequence (55bp)
aattgtgagcggataacaattgacattgtgagcggataacaagatactgagcaca
[Not used] K206000 Part-only sequence (130bp)
acattgattatttgcacggcgtcacactttgctatgccatagcaagatagtccataagattagcggatcctacctgacgctttttatcgcaactctctac
tgtttctccataccgtttttttgggctagc
[Test use] B0034 Part-only sequence (12bp)
aaagaggagaaa
[Test use] K518012 Part-only sequence (828bp)
tcacacaggaaagtactagatggcttcctccgaagacgttatcaaagagttcatgcgtttcaaagttcgtatggaaggttccgttaacggtcacgagttc
gaaatcgaaggtgaaggtgaaggtcgtccgtacgaaggtacccagaccgctaaactgaaagttaccaaaggtggtccgctgccgttcgcttgggacatcc
tgtccccgcagttccagtacggttccaaagcttacgttaaacacccggctgacatcccggactacctgaaactgtccttcccggaaggtttcaaatggga
acgtgttatgaacttcgaagacggtggtgttgttaccgttacccaggactcctccctgcaagacggtgagttcatctacaaagttaaactgcgtggtacc
aacttcccgtccgacggtccggttatgcagaaaaaaaccatgggttgggaagcttccaccgaacgtatgtacccggaagacggtgctctgaaaggtgaaa
tcaaaatgcgtctgaaactgaaagacggtggtcactacgacgctgaagttaaaaccacctacatggctaaaaaaccggttcagctgccgggtgcttacaa
aaccgacatcaaactggacatcacctcccacaacgaagactacaccatcgttgaacagtacgaacgtgctgaaggtcgtcactccaccggtgcttaataa
cgctgatagtgctagtgtagatcgctactagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagagagaatataaaaagcca
gattattaatccggcttttttattattt
[Not used] B0012 Part-only sequence (41bp)
tcacactggctcaccttcgggtgggcctttctgcgtttata
Full table
No. | ID | Name / Function | Source | State / Concentration / Date Made | Gene Size / Sequence | Initial Plasmid / Vector | Comments |
---|---|---|---|---|---|---|---|
1 | pAzoR / BBa_K1336000 | FMN-dependent NADH-azoreductase 1 | Pseudomonas putida | Miniprep,
48 ng/uL, 15/07/17, TO. |
612 bp | Expression vector pET-21a (+) (ampicillin resistant (ampR)), initially cloned between NdeI and BamHI. | Plasmid provided by Lisbon; with Paper. |
2 | p1B6 (AzoR 1B6) / BBa_K1336001 | Mutant: Heat-stable; FMN-dependent NADH-azoreductase 1 | Pseudomonas putida | Miniprep,
68 ng/uL, 15/07/14, TO. |
612 bp | Expression vector pET-21a (+) (ampR), initially cloned between NdeI and BamHI. | Plasmid provided by Lisbon; with Paper. |
3 | pCotA / BBa_K1336002 | Spore Coat Protein Laccase | Bacillus subtilis | Miniprep,
103 ng/uL, 15/07/14, TO. |
1542 bp | Expression vector pET-21a (+) (ampR), initially cloned between NheI and BamHI. | Plasmid provided by Lisbon; with Paper. |
4 | pBsDyP / BBa_K1336003 | Dye Decolourising Peroxidase BSU38260 | Bacillus subtilis | Miniprep,
51 ng/uL, 15/07/14, TO. |
1251 bp | Expression vector pET-21a (+) (ampR), initially cloned between NdeI and BamHI. | Plasmid provided by Lisbon; with Paper. |
5 | pPpDyP / BBa_K1336004 | Dye Decolourising Peroxidase PP_3248 | Pseudomonas putida | Miniprep,
55 ng/uL, 15/07/14, TO. |
864 bp | Expression vector pET-21a (+) (ampR), initially cloned between NdeI and BamHI. | Plasmid provided by Lisbon; with Paper. |
6 | LiP / BBa_K500000 | Lignin Peroxidase | Phanerochaete chrysosporium (White-Rot Fungi) | [Taken from BBa_K500000, and optimised for use in E. coli; being synthesised by Gene Oracle],
X ng/uL, dd/mm/yy, Gene Oracle. |
1116 bp | [To be cloned directly into expression vector, pSB1C3, between EcoRI and PstI.] | Synthesised (for free) by Gene Oracle. Sequence from Paper. |
7 | CueO / BBa_K729006 | Laccase | Escherichia coli | Miniprep,
X ng/uL, dd/mm/yy, TO. |
1612 bp | Plasmid Backbone: pSB1C3, i.e. chloramphenicol resistant (camR). | A device consisting of: a constituitive promoter (J23119), a strong RBS (B0034), and laccase for polyethylene degradation (K729002). |
8 | ispB / BBa_K1336005 | Octaprenyl Diphosphate Synthase | Escherichia coli, strain K-12 | Miniprep,
X ng/uL, dd/mm/yy, EG. |
972 bp | [To be cloned directly into expression vector, pSB1C3, between EcoRI and PstI.] | Using the antisense/reverse complement gene as a method of gene knockdown (i.e. as RNAi); in collaboration with the Edinburgh iGEM 2014 Team. |
9 | BBa_J04450 | RFP Coding Device | Spring 2014 BioBrick Distribution.
Plate 4, Well 4B. [Check! DT?]. |
(1) Miniprep,
333 ng/uL, 01/07/14, TO. (2) Miniprep, 38 ng/uL (NanoDrop, dodgy!) 01/07/14, TO. |
1069 bp,
Genomic Sequence[Add sequence! Made from combined BioBricks?] |
Plasmid Backbone: pSB1C3, i.e. chloramphenicol resistant (camR). | LacI-, and CAP-, sensitive; can fail if system contains LacI or CAP protein!
RFP Coding Device contains: LacI (R0010), strong RBS (B0034), mRFP1 (E1010), and double terminator (B0015 = B0010+B0012). |
10 | BBa_K314103 | Lac induced expression cassette | Spring 2014 BioBrick Distribution.
Plate 1, Well 4D. [Check! DT?]. |
Miniprep,
334 ng/uL, 01/07/14, TO. |
1638 bp,
Genomic Sequence[Add sequence!] |
Plasmid Backbone: pSB1C3, i.e. chloramphenicol resistant (camR).
Plasmid / Vector Map. |
Lactose (IPTG) inducible protein expression insert includes f1 origin (K314110), a Lac I generator (K314111), a lactose inducible promoter (R0011), and the Elowitz standard RBS (B0034). |
11 | BBa_R0010 | Promoter (LacI regulated) | Spring 2014 BioBrick Distribution.
Plate 3, Well 4G. [Check! DT?]. |
Miniprep,
329.1 ng/uL, 01/07/14, TO. |
200 bp,
Genomic Sequence[Add sequence!] |
Plasmid Backbone: pSB1C3, i.e. chloramphenicol resistant (camR).
Plasmid / Vector Map. |
This part is an inverting regulator sensitive to LacI and CAP. In the absence of LacI and CAP proteins, this part promotes transcription; in their presence, the part inhibits transcription. LacI can be inhibited by IPTG. |
12 | BBa_R0011 | Promoter (LacI regulated, lambda pL hybrid) | Spring 2014 BioBrick Distribution.
Plate 2, Well 6D (Inconsistent sequencing!). [Check! DT? / Maybe use Spring 2013 Distribution, Plate 5, Well 6G.]. |
Miniprep,
38 ng/uL (NanoDrop, dodgy!), 01/07/14, TO. |
55 bp,
Genomic Sequence[Add sequence!] |
Plasmid Backbone: pSB1C3, i.e. chloramphenicol resistant (camR).
Plasmid / Vector Map. |
Inverting regulatory region controlled by LacI (BBa_C0010, BBa_C0012, etc.) The PLlac 0-1 promoter is a hybrid regulatory region consisting of the promoter P(L) of phage lambda with the cI binding sites replaced with lacO1. |
13 | BBa_K206000 | pBAD Strong Promoter | Spring 2014 BioBrick Distribution.
Plate 3, Well 14A. [Check! DT?]. |
Miniprep,
144 ng/uL, 01/07/14, TO. |
130 bp,
Genomic Sequence[Add sequence!] |
Plasmid Backbone: pSB1C3, i.e. chloramphenicol resistant (camR).
Plasmid / Vector Map |
pBAD is an E. coli promoter that is induced by L-arabinose. In the absence of arabinose, the repressor protein AraC (BBa_I13458) binds to the AraI1 operator site of pBAD and the upstream operator site AraO2, blocking transcription; in its presence, transcription is permitted. |
14 | BBa_B0034 | RBS | Spring 2014 BioBrick Distribution.
Plate 4, Well 1N. [Check! DT?]. |
Miniprep,
156.5 ng/uL, 01/07/14, TO. |
12 bp,
Genomic Sequence[Add sequence!] |
Plasmid Backbone: pSB1A2, i.e. ampicillin resistant (ampR).
Plasmid / Vector Map |
RBS based on Elowitz (1999) repressilator. |
15 | BBa_K518012 | RBS + RFP + double Terminator | Spring 2014 BioBrick Distribution.
Plate 1, Well 18C. [Check! DT?]. |
(1) Miniprep,
49 ng/uL, 01/07/14, TO. (2) Miniprep, 219.2 ng/uL, 08/08/14, YKH. |
828 bp,
Genomic Sequence[Add sequence!] |
Plasmid Backbone: pSB1C3, i.e. chloramphenicol resistant (camR).
Plasmid / Vector Map |
This Coding Device contains: RBS.3 (medium) (B0032), mRFP1 (E1010), and double terminator (B0014 = B0012+B0011). |
16 | [CHECK: BAD PART !]
BBa_B0012 (2) |
Transcription Terminator for E. coli RNA polymerase | Spring 2014 BioBrick Distribution.
Plate 2, Well 2B. [Check! DT?]. |
Miniprep,
128 ng/uL, 01/07/14, TO. |
41 bp,
Genomic Sequence[Add sequence!] |
Plasmid Backbone: pSB1C3, i.e. chloramphenicol resistant (camR).
Plasmid / Vector Map |
TE from coliphage T7. This is a bad terminator (Experience: Fails). It is a promoter in the reverse direction. |
# | ID | Name / Function | Source | State / Concentration / Date Made | Gene Size / Sequence | Initial Plasmid / Vector | Comments |