Team:UESTC-China/yanTeam

From 2014.igem.org

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  <div id="SectionTitles1" style="width:1100px;">Fragments Ligation
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</h1>
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<table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
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  <tr>
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<th class="top">Component</th>
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<th class="top">20µl Reaction</th>
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  </tr>
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  <tr>
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<td class="mid">1.33X Master Mix</td>
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<td class="mid"> 15µl</td>
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  </tr>
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  <tr>
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<td class="mid">Insert DNA </td>
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<td class="mid"> the moles of insert DNA to vector DNA is 5:1</td>
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  </tr>
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  <tr>
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<td class="mid">Vector DNA</td>
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<td class="mid"> 50ng</td>
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  </tr>
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  <tr>
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<td class="mid">ddH2O</td>
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<td class="mid"> To 20µl</td>
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  </tr>
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  <tr>
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<td class="mid">Incubate at 50℃ for 1 hour</td>
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<td class="mid"></td>
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  </tr>
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</table>
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  </div>
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  <div id="SectionTitles2" style="width:1100px;">DNA Ligation with Gibson Assembly
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</h1>
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<table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
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  <tr>
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<th class="top">Component</th>
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<th class="top">20µl Reaction </th>
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  </tr>
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  <tr>
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<td class="mid">Vector DNA</td>
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<td class="mid">50ng</td>
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  </tr>
 +
  <tr>
 +
<td class="mid">Insert DNA</td>
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<td class="mid"> the moles of insert DNA to vector DNA is 5:1</td>
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  </tr>
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  <tr>
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<td class="mid">10X T4 DNA ligase buffer</td>
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<td class="mid">2µl</td>
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  </tr>
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  <tr>
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<td class="mid">T4 DNA ligase</td>
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<td class="mid">1µl</td>
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  </tr>
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  <tr>
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<td class="mid">ddH2O</td>
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<td class="mid">to 20µl</td>
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  </tr>
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  <tr>
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<td class="mid">Incubate at 25℃ for 12 hours</td>
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<td class="mid"></td>
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  </tr>
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</table>
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  </div>
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  <div id="SectionTitles3" style="width:1100px;">Fragment Digestion
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</h1>
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<table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
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  <tr>
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<th class="top">Component</th>
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<th class="top">50µl Reaction </th>
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  </tr>
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  <tr>
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<td class="mid">10x FastDigest buffer</td>
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<td class="mid">5µl</td>
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  </tr>
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  <tr>
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<td class="mid">Restriction enzyme 1</td>
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<td class="mid"> 1µl</td>
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  </tr>
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  <tr>
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<td class="mid">Restriction enzyme 2</td>
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<td class="mid">1µl</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">DNA</td>
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<td class="mid">1-2ug</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">ddH2O</td>
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<td class="mid">to 50µl</td>
 +
  </tr>
 +
  <tr>
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<td class="mid">Incubate at 37℃ for 2 hours</td>
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<td class="mid"></td>
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  </tr>
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</table>
 +
  </div>
 +
  <div id="SectionTitles4" style="width:1100px;">PCR Amplication Protocol for KOD-Plus-Neo
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</h1>
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<table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
 +
  <tr>
 +
<th class="top">Component</th>
 +
<th class="top">50µl Reaction </th>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">ddH2O</td>
 +
<td class="mid">33µl</td>
 +
  </tr>
 +
  <tr>
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<td class="mid">10X buffer for KOD-Plus-Neo</td>
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<td class="mid"> 5µl</td>
 +
  </tr>
 +
  <tr>
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<td class="mid">MgSO4</td>
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<td class="mid">3µl</td>
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  </tr>
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  <tr>
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<td class="mid">10mM dNTPs</td>
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<td class="mid">5ug</td>
 +
  </tr>
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  <tr>
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<td class="mid">10uM forward primer</td>
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<td class="mid">1µl</td>
 +
  </tr>
 +
  <tr>
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<td class="mid">10uM reverse primer</td>
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<td class="mid">1µl</td>
 +
  </tr>
 +
  <tr>
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<td class="mid">Template</td>
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<td class="mid">1µl </td>
 +
  </tr>
 +
  <tr>
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<td class="mid">KOD enzyme</td>
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<td class="mid">1µl</td>
 +
  </tr>
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</table>
 +
  </div>
 +
  <div id="SectionTitles5" style="width:1100px;">
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<table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
 +
  <tr>
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<th class="top"></th>
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<th class="top">Temperature </th>
 +
<th class="top">Time </th>
 +
<th class="top"> Cycle</th>
 +
  </tr>
 +
  <tr>
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<td class="mid">Step1</td>
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<td class="mid">94℃</td>
 +
<td class="mid">5min</td>
 +
<td class="mid">X1 cycle</td>
 +
  </tr>       
 +
  <tr>
 +
<td class="mid">Step2</td>
 +
<td class="mid">94℃</td>
 +
<td class="mid">30s</td>
 +
<td class="mid">X35 cycles</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid"></td>
 +
<td class="mid"> 56℃</td>
 +
<td class="mid">30s</td>
 +
<td class="mid"></td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid"></td>
 +
<td class="mid">68℃</td>
 +
<td class="mid">30s/kb</td>
 +
<td class="mid"></td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">Step3</td>
 +
<td class="mid">68℃</td>
 +
<td class="mid">5min</td>
 +
<td class="mid">X1 cycles</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid"></td>
 +
<td class="mid">10℃</td>
 +
<td class="mid">10min</td>
 +
<td class="mid"></td>
 +
  </tr>
-
<p style="color:#1b1b1b;">In order to further increase the plant ability of formaldehyde uptake and metabolism by synthesis biology technology, we choosed four enzyme-coding genes related to formaldehyde metabolic pathways from microorganism and plant: they are 3-hexulose-6-phosphate (HPS), 6-phospho-3-hexuloisomerase (PHI), formaldehyde dehydrogenase (FALDH) and formate-dehydrogenase (FDH). These genes are transformed into plants and will promote formaldehyde metabolism. For security reasons, we also induce <i>AdCP</i> gene into our plans because of its capability to lead to pollen abortion. At the same time, chloroplast transformation is taken into consideration to avoid gene flow and improve gene expression.
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</table>
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</p><br/>
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  </div>
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  <div id="SectionTitles6" style="width:1100px;">Fusion PCR Amplication
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  <h1 class="SectionTitles" style="width:1100px;">HPS-PHI</h1>
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</h1>
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<p style="color:#1b1b1b;">
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  <p id="underTitle">Each template will be diluted by the number of moles into 2-10ng/µl.</p>
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<br/>
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  <div id="fusionArea" ><table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
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The ribulose monophosphate (RuMP) pathway is one of the formaldehyde-fixation pathways found in microorganisms called methylotrophs, which utilize one-carbon compounds as the sole carbon source. The key enzymes of this pathway are 3-hexulose-6-phosphate synthase (HPS), which fixes formaldehyde to D-ribulose-5-phosphate (Ru5P) to produce D-arabino-3-hexulose-6-phosphate (Hu6P), and 6-phospho-3-hexuloisomerase (PHI), which converts Hu6P to fructose 6-phosphate (F6P).The two key enzymes work in chloroplast both.We will use fusion expression to conduct heterologous expression in tobacco <i>( Li-mei Chen et al,2010)</i>.
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  <tr>
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<th class="top">Component</th>
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<div align="center"><img style="width:50% ;" src="https://static.igem.org/mediawiki/2014/3/3f/Regu1.png" naptha_cursor="text">
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<th class="top">50µl Reaction </th>
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<p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:1000px; color:#1b1b1b;">
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  </tr>
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<strong>Fig.1</strong>
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  <tr>
-
Schematic Representation of the Bacterial RuMP Pathway and the Plant Calvin-Benson Cycle. HPS and PHI denote 3-hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase respectively. The abbreviations for several sugar phosphates are as follows: Ru5P, ribulose 5-phosphate; Hu6P, hexulose 6-phosphate; F6P, fructose 6-phosphate; FBP, fructose 1,6-bisphosphate; RuBP, ribulose1, 5-bisphosphate; 3-PGA, 3-phosphoglyce-rate. The other metabolites in the pathway are symbolized merely by their carbon numbers for simplicity <i></i>.
+
<td class="mid">ddH2O</td>
-
<br>
+
<td class="mid">32µl</td>
-
</p>
+
  </tr>
-
</div>
+
  <tr>
-
<br/>
+
<td class="mid">10X buffer for KOD-Plus-Neo</td>
-
+
<td class="mid"> 5µl</td>
-
+
  </tr>
-
  <h1 class="SectionTitles" style="width:1100px;">FALDH</h1>
+
  <tr>
-
<p style="color:#1b1b1b;">
+
<td class="mid">MgSO4</td>
-
<br/>
+
<td class="mid">3µl</td>
-
The glutathione-dependent formaldehyde dehydrogenase (FALDH) plays a key role in formaldehyde metabolism (Fig.3). FALDH is identified as an enzyme expressed in the cytoplasm. If we make <i>FALDH</i> over-express in plants, we can enhance plants’ tolerance to formaldehyde and increase the ability of plants to absorb formaldehyde. In the process of metabolism of formaldehyde, the formaldehyde may first combined with glutathione (GSH) to form the product of S-hydroxymethyl glutathione (HM-GSH), then FALDH in cytoplasm will catalyzes the formation of a S-formyl glutathione (F-GSH). Next the F-GSH will be hydrolyzed to formate (HCOOH) and GSH by S-formyl glutathione hydrolase (FGH).
+
  </tr>
-
<br/><br/></p>
+
  <tr>
-
<div align="center"><img style="width:40% ;" src="https://static.igem.org/mediawiki/2014/a/a7/Faldh.jpg">
+
<td class="mid">10mM dNTPs</td>
-
<p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:1000px; color:#1b1b1b;">
+
<td class="mid">5µl</td>
-
<strong>Fig.2</strong> a. <img align="top" src="https://static.igem.org/mediawiki/2014/0/04/C13-nmr.gif"> spectra from leaf extracts of transgenic tobacco plant treated with gaseous <img align="top" src="https://static.igem.org/mediawiki/2014/e/e7/H13CHO.gif"> for 2 h. b. <img align="top" src="https://static.igem.org/mediawiki/2014/0/04/C13-nmr.gif"> spectra from leaf extracts of WT treated with gaseous <img align="top" src="https://static.igem.org/mediawiki/2014/e/e7/H13CHO.gif"> for 2 h. c. The extract from WT plant leaves without <img align="top" src="https://static.igem.org/mediawiki/2014/e/e7/H13CHO.gif"> treatment was used to monitor the background <img align="top" src="https://static.igem.org/mediawiki/2014/0/04/C13-nmr.gif"> signal levels <i>(H Nian et al,2013)</i>.
+
  </tr>
-
<br>
+
  <tr>
-
</p>
+
<td class="mid">10uM forward primer</td>
-
</div>
+
<td class="mid">1µl</td>
-
<br/>
+
  </tr>
-
+
  <tr>
-
  <h1 class="SectionTitles" style="width:1100px;">FDH</h1>
+
<td class="mid">10uM reverse primer</td>
-
<p style="color:#1b1b1b;">
+
<td class="mid">1µl</td>
-
<br/>
+
  </tr>
-
Formate dehydrogenase is a mitochondrial-localized NAD-requiring enzyme while the HCOOH is getting into the mitochondrial,FDH will oxidize the formic acid into CO2, and reduce NAD+ to NADH with a high degree of specificity.In our project, the heterologous expression of <i>FDH</i> from arabidopsis thaliana in tobacco was completed.
+
  <tr>
-
<br/><br/></p>
+
<td class="mid">Template one</td>
-
<div align="center"><img style="width:50% ;" src="https://static.igem.org/mediawiki/2014/e/e9/Regu2.png">
+
<td class="mid">1µl </td>
-
<p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:1000px; color:#1b1b1b;">
+
  </tr>
-
<strong>Fig.3</strong> The abbreviations are as follows: FALDH:glutathione-dependent formaldehyde dehydrogenase; FDH: Formate dehydrogenase; HM-GSH: S-Hydroxymethyl glutathione; Forml-GSH: Formyl glutathione; SMM cycle: Methionine cycle.
+
  <tr>
-
<br>
+
<td class="mid">Template two</td>
-
</p>
+
<td class="mid">1µl </td>
-
</div>
+
  </tr>
-
<br/>
+
  <tr>
 +
<td class="mid">KOD enzyme</td>
 +
<td class="mid">1µl</td>
 +
  </tr>
 +
</table>
 +
  </div>
 +
  </div>
 +
  <div id="SectionTitles7" style="width:1100px;">
 +
<table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
 +
  <tr>
 +
<th class="top"></th>
 +
<th class="top">Temperature </th>
 +
<th class="top">Time </th>
 +
<th class="top"> Cycle</th>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">Step1</td>
 +
<td class="mid">94℃</td>
 +
<td class="mid">5min</td>
 +
<td class="mid">X1 cycle</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">Step2</td>
 +
<td class="mid"> 94℃</td>
 +
<td class="mid">30s</td>
 +
<td class="mid">X35 cycles</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid"></td>
 +
<td class="mid">56℃</td>
 +
<td class="mid">30s</td>
 +
<td class="mid"></td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid"></td>
 +
<td class="mid">68℃</td>
 +
<td class="mid">30s/kb</td>
 +
<td class="mid"></td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">Step3</td>
 +
<td class="mid"> 68℃</td>
 +
<td class="mid">5min</td>
 +
<td class="mid">X1 cycles</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid"></td>
 +
<td class="mid"> 10℃</td>
 +
<td class="mid">10min</td>
 +
<td class="mid"></td>
 +
  </tr>
 +
</table>
 +
</div>
 +
  <div id="SectionTitles8" style="width:1100px;">Colony PCR
 +
</h1>
 +
<table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
 +
  <tr>
 +
<th class="top">Component</th>
 +
<th class="top">25µl Reaction </th>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">ddH2O</td>
 +
<td class="mid">15.8µl</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">10X Taq buffer</td>
 +
<td class="mid"> 2.5µl</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">2.mM dNTPs</td>
 +
<td class="mid">0.5µl</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">10uM forward primer</td>
 +
<td class="mid">0.5µl</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">10uM reverse primer</td>
 +
<td class="mid">0.5µl</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">Taq enzyme</td>
 +
<td class="mid"> 0.2µl</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">Water with colony </td>
 +
<td class="mid">5µl </td>
 +
  </tr>
 +
</table>
 +
  </div>
 +
  <div id="SectionTitles9" style="width:1100px;">
 +
<table border="1" id="BiosensorsTable" cellspacing="0"; style="margin-left: 50px;">
 +
  <tr>
 +
<th class="top"></th>
 +
<th class="top">Temperature </th>
 +
<th class="top">Time </th>
 +
<th class="top"> Cycle</th>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">Step1</td>
 +
<td class="mid">95℃</td>
 +
<td class="mid">5min</td>
 +
<td class="mid">X1 cycles</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">Step2</td>
 +
<td class="mid"> 94℃</td>
 +
<td class="mid">30s</td>
 +
<td class="mid">X35 cycles</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid"></td>
 +
<td class="mid">56℃</td>
 +
<td class="mid">30s</td>
 +
<td class="mid"></td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid"></td>
 +
<td class="mid">72℃</td>
 +
<td class="mid">1min/kb</td>
 +
<td class="mid"></td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid">Step3</td>
 +
<td class="mid">72℃</td>
 +
<td class="mid">10min</td>
 +
<td class="mid">X1 cycles</td>
 +
  </tr>
 +
  <tr>
 +
<td class="mid"></td>
 +
<td class="mid">10℃</td>
 +
<td class="mid">10min</td>
 +
<td class="mid"></td>
 +
  </tr>
 +
</table>
 +
  </div>
 +
</div>
 +
<div class="textEditingArea" >
 +
  <h1 class="textEditingTitle" style="width: 1100px">E. coli Transformation</br>
 +
</h1><p class="textEditingstyle">1)Streak E.coli cells (DH5α) on an LB plate, (BL21 (DE3) LysS cells on LB plate + 25 mg/ml chloramphenicol);<br>
 +
  2) Allow cells to grow at 37℃ overnight;<br>
 +
  3)Place one colony in 10 ml LB media (+ antibiotic selection if necessary), grow overnight at 37℃;<br>
 +
  4) Take 2 ml LB media and save for blank, transfer 5 ml overnight DH5α culture into 500 ml LB media in 3 L flask;<br>
 +
  5) Allow cell to grow at 37℃ (250 rpm), until OD600= 0.4 (~2-3 hours);<br>
 +
  6) Transfer cells to 2 centrifuge bottles (250 ml), and place cells on ice for 20 min;<br>
 +
  7) Centrifuge cells in at 4℃ for 10 min at 3,000 g and subsequent resuspension may be done in the same bottle. Cells must remain cold for the rest of the procedure: Transport tubes on ice and resuspend on ice in the cold room;<br>
 +
  8) Pour off media and resuspend cells in 30 ml of cold 0.1 M CaCl2. Transfer the suspended cells into 50 ml polypropylene tubes, and incubate on ice for 30 min;<br>
 +
  9) Centrifuge cells at 4O℃ for 10 min at 3,000 g;<br>
 +
  10) Pour supernatant and resuspend cells (by pipetting) in 8 ml cold 0.1M CaCl2 containing 15% glycerol Transfer 140 ml into (1.5 ml).Eppendorf tubes placed on ice. Freeze the cells in liquid nitrogen. Cells stored at -80℃ can be used for transformation for up to ~6 months;<br>
 +
  11) Add 10 to 40 ng (10 to 25 ml volume) of DNA to 250 ml of competent cells in step;<br>
 +
  12) Incubate the mixture on ice for 30 minutes;<br>
 +
  13) Transfer the reaction to a 42℃ water for 1min;<br>
 +
  14) Add 0.9 ml of LB culture to each tube and incubate at 37℃ for 1 hour in a roller drum (250 rpm) to allow cells to recover and express the antibiotic resistance marker; <br>
 +
  15) Incubate on ice for 2 minutes;<br>
 +
  16) Spread the appropriate quantity of cells (50 to 100 ml) on selective media. Store the remaining cells at 4℃.<br>
 +
  (A) E. coli cells from the control tube without DNA in step 12 above are plated on selective medium and nonselective medium. The first plating ensures that the selective medium is working properly since no growth should be observed. The second plating provides the number of viable cells in the absence of selective medium. <br>
 +
  (B) E. coli cells being tested for competency are plated on LB agar containing ampicillin (50 mg/ml final concentration) to ensure that the transformation efficiency has not decreased over time due to storage.<br>
 +
  17) Incubate all plates overnight at 37℃.<br>
 +
  18) Count the number of colonies.<br>
 +
</p>
 +
<h1 class="textEditingTitle" style="width: 1100px">A.tume Transformation</br></h1>
 +
<p class="textEditingstyle">
 +
1)Have 0.5~1 g plasmid DNA into 100  L competent cells, on ice for 30 min;<br>
 +
2)Frozen in liquid nitrogen for 5 min, grow at 37 C for 5 min, on ice for 2 min;<br>
 +
3)Pour in 1000 LYEB, 200 rpm, grow at 28℃ for 2~3 h;<br>
 +
4)6000rpm,2min. Suspend collected bacteria with 100µl YEB and evenly coat that at a YEB medium. (125 mg/L Sm or 50 mg/L rif, and 50 mg/L Kan included);<br>
 +
5)Grow upside down at 28℃, for 48h;<br>
 +
6)Pick positive clones and grow them in LB medium with antibiotic at 28℃ for 48h;<br>
 +
7)Inject to LB medium in flasks by the day of transformation, in the rate of 1:50. Grow to OD600 = 0.5. Ready to infect tobacco leaf discs.<br>
 +
</p>
 +
<h1 class="textEditingTitle" style="width:1100px">Agrobacterium-mediated Tobacco Transformation</br></h1>
 +
<p class="textEditingstyle">Tobacco was transformed essentially by following the leaf disk co-cultivation protocol of <i>(McCormick et al., 1986)</i>. Co-cultivation was initiated by dipping leaf disks in an Agrobacterium suspension, blotting them on sterile tissue paper, and incubating them for 2 d on MS medium <i>(Murashige and Skoog 1962)</i>  containing naphthalene acetic acid (NAA 0.1mg/L), 6-Benzylaminopurine (6-BA, 2.0mg/L). Cefotaxime sodium (Cef) was included in the medium (500mg/L) to inhibit Agrobacterium growth. The leaf disks were then transferred onto a medium containing antibiotics for transgenic plant selection(kanamycin, 50 mg/L), and NAA (0.1 mg/L), 6-BA (2.0 mg/L), Cef (500mg/L). And incubate them for 1 month on the medium above. At last, cut off the bud from the callus, put the buds into the mudium containing NAA (0.1mg/L), Cef (500mg/L) and kanamycin (25 mg/L).
 +
 +
</p>
 +
<h1 class="textEditingTitle" style="width: 1100px">Detection Method </br></h1>
 +
<p class="textEditingstyle">1)Molecular Identification<br>
-
  <h1 class="SectionTitles" style="width:1100px;">Stomatal opening</h1>
+
Extract genomic DNA from leaves of tobacco seedlings. Using specific primers to amplify the target gene. Extract leaf mRNA from leaves of grown tobacco which DNA testing was positive. Detected by the method of RT-PCR whether target gene is expressed.<br>
-
<p style="color:#1b1b1b;">
+
2)Phenotype testing<br>
-
<br/>
+
</p>
-
Stomata are microscopic pores surrounded by two guard cells and play an important role in the uptake of CO2 for photosynthesis. Recent researches revealed that light-induced stomatal opening is mediated by at least three key components: blue light receptor phototropin, plasma membrane H+-ATPase, and plasma membrane inward-rectifying K+ channels. However, Yin Wang, et al (2014) showed that only increasing the amount of H+-ATPase in guard cells had a significant effect on light-induced stomatal opening (Fig. 4). Transgenic Arabidopsis plants by overexpressing H+-ATPase in guard cells exhibited enhanced photosynthesis activity and plant growth. Therefore,in order to strengthen the ability of absorbing formaldehyde, we overexpressed H+-ATPase (AtAHA2) in transgenic tobacco guard cells,resulting in a significant effect on light-induced stomatal opening.
+
<table border="1" id="TextTable" cellspacing="0"; style="margin-left: 50px;">
-
<br/><br/></p>
+
  <tr>
-
<div align="center"><img style="width:40% ;" src="https://static.igem.org/mediawiki/2014/c/c8/Stoma.png">
+
<th class="top"></th>
-
<p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:800px; color:#1b1b1b;">
+
<th class="top">The experimental group </th>
-
<strong>Fig.4</strong> Typical stomata in the epidermis illuminated with light for 30 min (<i>Yin Wang,et al.2014</i>).
+
<th class="top">control group </th>
-
<br>
+
-
</p>
+
-
</div>
+
-
<br/>
+
-
  <h1 class="SectionTitles" style="width:1100px;">Biosafty</h1>
+
  </tr>
-
<p style="color:#1b1b1b;">
+
  <tr>
-
<br/>
+
<td class="lastmid">Qualitative detection</td>
-
In order to promise biology safety, we use male sterility systems which can be used as a biological safety containment to prevent horizontal transgene flow. Pawan Shukla et al (2014) has used a plant pathogen-induced gene, cysteine protease for inducing male sterility. This gene was identified in the wild peanut, <i>Arachis diogoi</i> differentially expressed when it was challenged with the late leaf spot pathogen, <i>Phaeoisariopsis personata</i>. <i>Arachis diogoi</i> cysteine protease (AdCP) was expressed under the strong tapetum-specific promoter (TA29) and tobacco transformants were generated. Morphological and histological analysis of <i>AdCP</i> transgenic plants showed ablated tapetum and complete pollen abortion.
+
<td class="lastmid">Have 6 positive seedlings from every transgenic line (about 8 leaves age) , and 6 wild-type seedings with the same growth equally distributed into three 650ml culture bottles. Treat with 10µl 37% formaldehyde for a week. </td>
 +
<td class="mid"></td>
 +
 
 +
  </tr>
 +
<tr>
 +
<td class="lastmid"><br>Quantitative detection</td>
 +
<td class="lastmid"><br> Have 4 positive seedlings from every transgenic line (about 8 leaves age) in a 650ml culture bottle. Treat with 10µl 37% formaldehyde for 2 weeks. Using a formaldehyde detector (Gastec Passive Dositube, 91D, Ayase, Kanagawa, Japan) was set in the hole to detect gaseous formaldehyde. Three and a half hours later, the measurement was stopped and the results were photographed <i>(Chen et al., 2010)</i>.</td>
 +
<td class="lastmid"><br>Put 4 wild -type seedlings with the same growth of seedlings in experimental group into 650ml culture bottle , with same processing as the case of the experimental group .</td>
 +
 
 +
  </tr>
 +
  </table>
 +
  </p>
 +
 
 +
  <p id="references"><b>References</b><br>
 +
<i>McCormick, S., J. Niedermeyer, J. Fry, A. Barnason, R. Horsch and R. Fraley (1986). "Leaf disc transformation of cultivated tomato (L. esculentum) using Agrobacterium tumefaciens."Plant Cell Rep 5(2): 81-84.<br>
 +
Chen, L. M., H. Yurimoto, K. Z. Li, I. Orita, M. Akita, N. Kato, Y. Sakai and K. Izui (2010). "Assimilation of formaldehyde in transgenic plants due to the introduction of the bacterial ribulose monophosphate pathway genes." Biosci Biotechnol Biochem</i> 74(3): 627-635.</i><br>
 +
</p>
-
<br/><br/></p>
 
-
<div align="center"><img style="width:50% ;" src="https://static.igem.org/mediawiki/2014/1/1c/New_fig5.png">
 
-
<p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:1000px; color:#1b1b1b;">
 
-
<strong>Fig.5</strong> Pollen germination of untransformed control plant and sterile transgenic plantsin vitro. Pollen grains were germinated on sucrose-boric acid medium and over 500 pollen grains were observed. a. Untansformed control plant pollen, b. Sterile pollen.Scale bar 25 μm (<i>Pawan Shukla et al 2014</i>).
 
-
<br>
 
-
</p>
 
</div>
</div>
-
<br/>
 
-
  <h1 class="SectionTitles" style="width:1100px;">Vectors</h1>
 
-
<p style="color:#1b1b1b;">
 
-
<br/>
 
-
The production of HPS, PHI, and FDH are located in chloroplast, while the production of <i>FALDH</i> are located in cytoplasm. We used chloroplast transit peptides to locate these productions of genes. So we constructed different vectors with and without transit peptide. We hope to compare the ability of metabolizing formaldehyde of transgenic tobacco between different transgenic lines. We planned to constructed 11 vectors (Fig. 6), including two backbones, six mono-gene expression vectors and three multi-gene expression vectors (Fig. 7). piGEM003, piGEM004 and piGEM005 are individual mono-gene expression vectors with transit peptides, while piGEM006, piGEM006, piGEM008 are individual multi-gene expression vectors without transit peptides. piGEM009 is a multi-gene expression vector without any transit peptides, while piGEM011 is a multi-gene expression vector with three peptides. piGEM010 is a multi-gene expression vector with two transit peptides.
 
-
 
-
<br/><br/></p>
 
-
<div align="center"><img style="width:70% ;" src="https://static.igem.org/mediawiki/2014/2/22/Dd.png"><br><br>
 
-
<p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:450px; color:#1b1b1b;">
 
-
<strong>Fig.6</strong>  The procedure we constructed our vectors.
 
-
<br>
 
-
</p>
 
</div>
</div>
-
<br/><br/><br/>
+
</div>
-
+
-
<div align="center"><img width="70%" src="https://static.igem.org/mediawiki/2014/8/8f/Nvector.png">
+
-
  <p style="position:relative; padding:19 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: calibri; text-align:justify; width:400px; color:#1b1b1b;">
+
-
<strong>Fig.7</strong> Schematic of vectors we constructed
+
-
<br>
+
-
</p>
+
-
</div>
+
-
<br/>
+
-
<h1 class="SectionTitles" style="width:1100px;">References</h1>
+
-
<p style="position:relative; left:0px; padding:15 5px; font-size:20px; font-family: calibri, arial, helvetica, sans-serif; font-style: Italic; text-align:justify; color:#1b1b1b;">
+
-
Chen, L. M., H. Yurimoto, K. Z. Li, I. Orita, M. Akita, N. Kato, Y. Sakai and K. Izui (2010). "Assimilation of formaldehyde in transgenic plants due to the introduction of the bacterial ribulose monophosphate pathway genes." Biosci Biotechnol Biochem 74(3): 627-635.<br/>
+
-
Nian, H., Q. Meng, W. Zhang and L. Chen (2013). "Overexpression of the formaldehyde dehydrogenase gene from Brevibacillus brevis to enhance formaldehyde tolerance and detoxification of tobacco." Appl Biochem Biotechnol 169(1): 170-180.<br/>
+
-
Shukla, P., N. K. Singh, D. Kumar, S. Vijayan, I. Ahmed and P. B. Kirti (2014). "Expression of a pathogen-induced cysteine protease (AdCP) in tapetum results in male sterility in transgenic tobacco." Funct Integr Genomics 14(2): 307-317.<br/>
+
-
Wang, Y., K. Noguchi, N. Ono, S. Inoue, I. Terashima and T. Kinoshita (2014). "Overexpression of plasma membrane H+-ATPase in guard cells promotes light-induced stomatal opening and enhances plant growth." Proc Natl Acad Sci U S A 111(1): 533-538.
+
-
</p><br/>
+
-
</div>
 
-
</div>
 
-
<div class="middle-photo-each">
 
-
<div class="middle-content" style="height: 0;"></div>
 
-
</div>
 
</div>
</div>
</div>
</div>
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</div>
</div>
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+
/*back to top*/
 +
<div style="display: none;" id="rocket-to-top">
 +
<div style="opacity:0;display: block;" class="level-2"></div>
 +
<div class="level-3"></div>
 +
</div>
<script type="text/javascript" src="http://code.jquery.com/jquery-1.10.1.min.js"></script>
<script type="text/javascript" src="http://code.jquery.com/jquery-1.10.1.min.js"></script>

Revision as of 13:23, 17 October 2014

UESTC-China