Team:HZAU-China/Modeling

From 2014.igem.org

(Difference between revisions)
(Prototype team page)
Line 1: Line 1:
-
<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
+
<!DOCTYPE html>
-
 
+
-
 
+
-
{{CSS/Main}}
+
-
 
+
-
 
+
<html>
<html>
 +
<!--[if lt IE 7]> <html class="no-js lt-ie9 lt-ie8 lt-ie7" lang="en"> <![endif]-->
 +
<!--[if IE 7]>    <html class="no-js lt-ie9 lt-ie8" lang="en"> <![endif]-->
 +
<!--[if IE 8]>    <html class="no-js lt-ie9" lang="en"> <![endif]-->
 +
<!--[if gt IE 8]><!--> <html class="no-js" lang="en"> <!--<![endif]-->
 +
<head>
 +
<style>
 +
#contentSub, #footer-box, #catlinks, #search-controls, #p-logo, .printfooter, .firstHeading, .visualClear{display: none;}
 +
#globalWrapper, #content { /*-- changes default wiki settings --*/
 +
width: 100%;
 +
height: 100%;
 +
border: 0px;
 +
background-color: transparent;
 +
margin: 0px;
 +
padding: 0px;
 +
        color: #979797;
 +
        font-family: Arial, "Times New Roman", Georgia, Helvetica, Arial, sans-serif;
 +
        color:#222;
 +
        font-size:15px;
 +
        font-weight:100;
 +
        line-height:26px;
 +
}
-
<!--main content -->
+
html, body, .wrapper { /*-- changes default wiki settings --*/
-
<table width="70%" align="center">
+
width: 100%;
-
 
+
height: 100%;
-
 
+
background-color: transparent;
-
<!--welcome box -->
+
}
-
<tr>
+
#top-section {
-
<td style="border:1px solid black;" colspan="3" align="center" height="150px" bgColor=#FF404B>
+
    background-color:#484848;
-
<h1 >WELCOME TO iGEM 2014! </h1>
+
    border: 0 none;
-
<p>Your team has been approved and you are ready to start the iGEM season!
+
    width: 100%;
-
<br>On this page you can document your project, introduce your team members, document your progress <br> and share your iGEM experience with the rest of the world! </p>
+
    height: 24px;
-
<br>
+
    z-index: 100;
-
<p style="color:#E7E7E7"> <a href="https://2014.igem.org/wiki/index.php?title=Team:HZAU-China/Modeling&action=edit"style="color:#FFFFFF"> Click here  to edit this page!</a> </p>
+
    top: 0;
-
</td>
+
    position: fixed;
-
</tr>
+
}
-
 
+
#menubar {
-
<tr> <td colspan="3"  height="5px"> </td></tr>
+
    top: 2px;
-
<!-- end welcome box -->
+
    font-family: Helvetica, Arial, Sans-serif;
-
<tr>
+
    font-size: 14px;
-
 
+
}
-
<!--navigation menu -->
+
.left-menu,.left-menu a {
-
<td align="center" colspan="3">
+
    color: white;
-
 
+
    left: 0;
-
<table  width="100%">
+
    text-align: left;
-
<tr heigth="15px"></tr>
+
    text-transform: capitalize;
-
<tr heigth="75px">
+
}
-
 
+
.right-menu,.right-menu a {
-
 
+
    color: white;
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7> 
+
    right: 0;
-
<a href="https://2014.igem.org/Team:HZAU-China"style="color:#000000">Home </a> </td>
+
    text-align: right;
-
 
+
}
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
+
.right-menu:hover, .left-menu:hover {
-
<a href="https://2014.igem.org/Team:HZAU-China/Team"style="color:#000000"> Team </a> </td>
+
    background-color: transparent;
-
 
+
}
-
<td style="border:1px solid black;" align="center"  height ="45px"  onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
+
.right-menu:hover a {
-
<a href="https://igem.org/Team.cgi?year=2014&team_name=HZAU-China"style="color:#000000"> Official Team Profile </a></td>
+
    color: white;
-
 
+
}
-
<td style="border:1px solid black" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
+
.right-menu li a, .left-menu li a {
-
<a href="https://2014.igem.org/Team:HZAU-China/Project"style="color:#000000"> Project</a></td>
+
    background-color: transparent;
 +
    color: white;
 +
    padding:0,15px,0,0;
 +
    margin:0;
 +
}
 +
.right-menu li a:hover {
 +
    color: white;
 +
    text-decoration:underline;
 +
}
 +
.right-menu li a:visited {
 +
    color: white;
 +
}
 +
.new {
 +
    color:white;
 +
}
 +
a, a:visited {
 +
    color: white;
 +
    text-decoration: none;
 +
}
 +
a:hover {
 +
    color: white;
 +
    text-decoration: underline;
 +
}
 +
</style>
 +
<meta charset="utf-8" />
 +
<meta name="viewport" content="width=device-width" />
 +
<title>2014HZAU-China</title>
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
+
<!-- ////////////////////////////////// -->
-
<a href="https://2014.igem.org/Team:HZAU-China/Parts"style="color:#000000"> Parts</a></td>
+
<!-- //      Stylesheets Files      // -->
 +
<!-- ////////////////////////////////// -->
 +
<link rel="stylesheet" href="https://2014.igem.org/Team:HZAU-China/base.css?action=raw&ctype=text/css" type="text/css" />
 +
<link rel="stylesheet" href="https://2014.igem.org/Team:HZAU-China/framework.css?action=raw&ctype=text/css" type="text/css" />
 +
<link rel="stylesheet" href="https://2014.igem.org/Team:HZAU-China/style.css?action=raw&ctype=text/css" type="text/css" />
 +
<link rel="stylesheet" href="https://2014.igem.org/Team:HZAU-China/noscript.css?action=raw&ctype=text/css" type="text/css" media="screen,all" id="noscript"/>
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
 
-
<a href="https://2014.igem.org/Team:HZAU-China/Modeling"style="color:#000000"> Modeling</a></td>
 
-
<td style="border:1px solid black;" align="center" height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7> 
+
 
-
<a href="https://2014.igem.org/Team:HZAU-China/Notebook"style="color:#000000"> Notebook</a></td>
+
<!-- ////////////////////////////////// -->
 +
<!-- //    Google Webfont Files    // -->
 +
<!-- ////////////////////////////////// -->
-
<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>
 
-
<a href="https://2014.igem.org/Team:HZAU-China/Safety"style=" color:#000000"> Safety </a></td>
 
-
<td style="border:1px solid black;" align="center"  height ="45px" onMouseOver="this.bgColor='#d3d3d3'" onMouseOut="this.bgColor='#e7e7e7'" bgColor=#e7e7e7>  
+
<!-- ////////////////////////////////// -->
-
<a href="https://2014.igem.org/Team:HZAU-China/Attributions"style="color:#000000"> Attributions </a></td>
+
<!-- //       Favicon Files        // -->
 +
<!-- ////////////////////////////////// -->
 +
<link rel="shortcut icon" href="images/favicon.ico" />
-
<td align ="center"> <a href="https://2014.igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="55px"></a> </td>
+
<!-- //     Javascript Files        // -->
-
</tr>
+
-
</table>
+
-
</tr>
+
-
</tr>
+
-
</td>
+
 +
<script src="https://2014.igem.org/Team:HZAU-China/jquery.min.js?action=raw&ctype=text/javascript"></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/jquery.easing-1.3.min.js?action=raw&ctype=text/javascript"></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/tooltip.js?action=raw&ctype=text/javascript" ></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/dropdown.js?action=raw&ctype=text/javascript" ></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/tinynav.min.js?action=raw&ctype=text/javascript" ></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/camera.min.js?action=raw&ctype=text/javascript" ></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/jquery.fancybox.js?action=raw&ctype=text/javascript"></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/jquery.fancybox-media.js?action=raw&ctype=text/javascript" ></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/jquery.ui.totop.min.js?action=raw&ctype=text/javascript" ></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/ddaccordion.js?action=raw&ctype=text/javascript" ></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/jquery.twitter.js?action=raw&ctype=text/javascript" ></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/jflickrfeed.min.js?action=raw&ctype=text/javascript"></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/faq-functions.js?action=raw&ctype=text/javascript" ></script>
 +
<script src="https://2014.igem.org/Team:HZAU-China/theme-functions.js?action=raw&ctype=text/javascript" ></script>
-
<tr> <td colspan="3"  height="15px"> </td></tr>
+
<script>
-
<tr><td bgColor="#e7e7e7" colspan="3" height="1px"> </tr>
+
$(document).ready(function() {
-
<tr> <td colspan="3"  height="5px"> </td></tr>
+
    //Camera Jquery
 +
    $('#camera-slide').camera({
 +
        thumbnails: false,
 +
        hover: false,
 +
        pagination: false,
 +
    });  
 +
});
 +
</script>
-
<!--modeling content -->
+
<!-- IE Fix for HTML5 Tags -->
-
<tr><td colspan="3"> <h3>Modeling</h3></td></tr>
+
<!--[if lt IE 9]><script src="http://html5shiv.googlecode.com/svn/trunk/html5.js"></script>
-
</tr>
+
<![endif]-->
 +
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" /></head>
 +
<body>
 +
<!-- header start here -->
 +
<header>
 +
    <div id="main-wrapper">
 +
        <!-- logo start here -->
 +
        <div id="logo-left">
 +
            <a href="https://igem.org/Team.cgi?year=2014&team_name=HZAU-China"><img src="https://static.igem.org/mediawiki/2014/b/bb/Hazuteamlogo918.png" alt="HZAU-China" /></a>
 +
        </div>
 +
        <!-- logo end here -->
 +
 +
<!-- igemlogo start here -->
 +
<div id="logo-right">
 +
            <a href="https://2014.igem.org/Main_Page"><img src="https://static.igem.org/mediawiki/2014/c/ce/Hzauigemlogo.png" alt="iGEM" /></a>
 +
        </div>
 +
        <!-- igemlogo end here -->
 +
 +
        <!-- mainmenu start here -->
 +
        <nav id="mainmenu">
 +
            <ul id="menu">
 +
                <li class="dropdown"><a href="https://2014.igem.org/Team:HZAU-China">home</a></li>
 +
                <li class="dropdown"><a href="https://2014.igem.org/Team:HZAU-China/Team">Team</a>
 +
    <ul>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Team"><span>-</span>Members</a></li>
 +
<li><a href="https://2014.igem.org/Team:HZAU-China/Attributions"><span>-</span>Attributions</a></li>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Gallery"><span>-</span>Gallery</a></li>   
 +
                    </ul>
 +
</li>
 +
                <li class="dropdown"><a href="https://2014.igem.org/Team:HZAU-China/Project">Project</a>
 +
    <ul>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Project"><span>-</span>Background</a></li>
 +
<li><a href="https://2014.igem.org/Team:HZAU-China/Design"><span>-</span>Design overview</a></li>
 +
<li><a href="https://2014.igem.org/Team:HZAU-China/Input"><span>-</span>Input module</a></li>
 +
<li><a href="https://2014.igem.org/Team:HZAU-China/Processing"><span>-</span>Processing module</a></li>
 +
<li><a href="https://2014.igem.org/Team:HZAU-China/Output"><span>-</span>Output module</a></li>
 +
<li><a href="https://2014.igem.org/Team:HZAU-China/Application"><span>-</span>Application</a></li>
 +
                    </ul>
 +
</li>
 +
<li class="dropdown"><a href="https://2014.igem.org/Team:HZAU-China/Review">Wetlab</a>
 +
                    <ul>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Review"><span>-</span>Overview</a></li>
 +
<li><a href="https://2014.igem.org/Team:HZAU-China/Construction"><span>-</span>Construction</a></li>
 +
<li><a href="https://2014.igem.org/Team:HZAU-China/Characterization"><span>-</span>Characterization</a></li>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Protocol"><span>-</span>Protocol</a></li>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Labnotes"><span>-</span>Labnotes</a></li>   
 +
                    </ul>
 +
                </li>
 +
                <li class="dropdown"><a href="https://2014.igem.org/Team:HZAU-China/Modeling">Modeling</a>
 +
                    <ul>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Modeling"><span>-</span>Overview</a></li>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Biological"><span>-</span>Biological processes</a></li>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Comparison"><span>-</span>Comparison between different designs</a></li>
 +
<li><a href="https://2014.igem.org/Team:HZAU-China/Analysis"><span>-</span>Simulation and sensitivity analysis</a></li>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Circuit"><span>-</span>Design principle of rewirable circuit</a></li> 
 +
                    </ul>
 +
                </li>
 +
<li class="dropdown"><a href="https://2014.igem.org/Team:HZAU-China/Achievements">Achievements</a>
 +
    <ul>                       
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Achievements"><span>-</span>Judging</a></li>
 +
<li><a href="https://2014.igem.org/Team:HZAU-China/Parts"><span>-</span>Parts</a></li>
 +
                    </ul>
 +
</li>
 +
                <li class="dropdown"><a href="https://2014.igem.org/Team:HZAU-China/Outreach">Outreach</a>
 +
                    <ul>
 +
<li><a href="https://2014.igem.org/Team:HZAU-China/Collaboration"><span>-</span>Collaboration</a></li>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Meetup"><span>-</span>Meetup</a></li>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Philosophy"><span>-</span>Philosophy and economics</a></li>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Pubic outreach"><span>-</span>Pubic outreach</a></li>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Safety"><span>-</span>Safety</a></li>
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Social media"><span>-</span>Social media</a></li> 
 +
                        <li><a href="https://2014.igem.org/Team:HZAU-China/Other"><span>-</span>Other dream</a></li>
 +
                    </ul>
 +
                </li>
 +
            </ul>
 +
        </nav>
 +
        <!-- mainmenu end here -->     
 +
    </div>
 +
</header>
 +
<!-- header end here -->
 +
<!-- pagetitle start here -->
 +
<section id="pagetitle-wrapper">
 +
    <div class="pagetitle-content">   
 +
    <h2>Overview</h2> 
 +
    </div>
 +
</section>
 +
<!-- pagetitle end here -->
-
<tr>
+
<!-- breadcrumb start here -->
-
<td width="45%" valign="top">  
+
<section id="breadcrumb-wrapper">
-
<p>If you choose to create a model during your project, please write about it here. Modeling is not an essential part of iGEM, but we encourage any and all teams to model some aspect of their project. See previous "Best Model" awards for more information.</p>
+
    <div id="breadcrumb-content">
-
</td>
+
        <ul>
 +
        <li><a href="index.html">Home</a></li>
 +
            <li><a href="#">Modeling</a></li>
 +
    <li><a href="#">Overview</a></li>
 +
        </ul>
 +
    </div>
 +
</section>
 +
<!-- breadcrumb end here -->
-
<td></td>
+
<!-- maincontent start here -->
-
<td></td>
+
<section id="content-wrapper"> 
-
</tr>
+
    <div class="row">
 +
        <div class="eleven columns">
 +
        <div class="offset-by-one columns">
 +
<p class="highlighttext">Our project aims to engineer cells that can process information to adapt to the environment
 +
as we expected, so we need to yield quantitative predictions of gene behaviors. Mathematic model becomes a powerful tool here. It not only helps us analyze the phenomena, but also contributes to the design of genetic circuits. Our models can be divided into several parts. Firstly, we will introduce the biological processes in our design and translate them into mathematic language. Then we will make some comparisons to explain why we designed circuits this way. Next, we will present the simulation of deterministic model and stochastic model. Parameter sensitivity analysis will also be made here. Finally, we will talk about the design principle of the rewirable circuit using ODE sets with matrices. We hope that any other researches can get insight from the mathematic model and make the rewirable circuit widely used</p>                  
 +
        </div>
 +
        </div>
 +
    </div>
 +
     
 +
</section>
 +
<!-- maincontent end here -->
 +
<!-- footer start here -->
 +
<footer>
 +
    <div class="row">
 +
        <div class="four columns mobile-one">
 +
            <img src="https://static.igem.org/mediawiki/2014/c/cc/Hazulogo-w.png" alt="" class="img-left" width="200px"/>
 +
            <p class="copyright-text">&copy; 2014 Huazhong Agricultural University iGEM Team. All rights reserved.</p>
 +
        </div>
 +
        <div class="eight columns mobile-one">
 +
    <h5>Contacts</h5>
 +
            <div class="six columns mobile-one">
 +
                <ul>             
 +
            <li class="address-icon">No.1, Shizishan Street, Hongshan District<br />Wuhan, Hubei Province<br />430070 P.R.China</li>
 +
            <li class="email-icon">Email : hzauigem@gmail.com</li>         
 +
                </ul>
 +
            </div>
 +
            <div class="six columns mobile-one">
 +
                <ul>
 +
<li class="twitter-icon">Twitter : hzau_igem</li>
 +
<li class="wechat-icon">Wechat : hzauigem</li>
 +
<li class="qq-icon">QQ Group : 313297095</li>
 +
                <li class="y-icon">YouTube : hzauigem</li>
 +
                </ul>
 +
            </div>
 +
</div>
 +
    </div>
 +
</footer>
 +
<!-- footer end here -->
 +
     
 +
<script>$('#noscript').remove();</script>
-
</table>
+
</body>
</html>
</html>

Revision as of 11:12, 10 October 2014

<!DOCTYPE html> 2014HZAU-China

Overview

Our project aims to engineer cells that can process information to adapt to the environment as we expected, so we need to yield quantitative predictions of gene behaviors. Mathematic model becomes a powerful tool here. It not only helps us analyze the phenomena, but also contributes to the design of genetic circuits. Our models can be divided into several parts. Firstly, we will introduce the biological processes in our design and translate them into mathematic language. Then we will make some comparisons to explain why we designed circuits this way. Next, we will present the simulation of deterministic model and stochastic model. Parameter sensitivity analysis will also be made here. Finally, we will talk about the design principle of the rewirable circuit using ODE sets with matrices. We hope that any other researches can get insight from the mathematic model and make the rewirable circuit widely used

Contacts
  • No.1, Shizishan Street, Hongshan District
    Wuhan, Hubei Province
    430070 P.R.China
  • Wechat : hzauigem
  • QQ Group : 313297095
  • YouTube : hzauigem