Team:Saarland/Test
From 2014.igem.org
(Difference between revisions)
Line 288: | Line 288: | ||
| GcaD rev: | | GcaD rev: | ||
| TGTAC CTGCAG TTA TTAGGATTTTTTATTAATATC | | TGTAC CTGCAG TTA TTAGGATTTTTTATTAATATC | ||
+ | |- | ||
+ | |<b>Quick Change PCR for restriction site mutagenesis</b> | ||
+ | | | ||
+ | |- | ||
+ | | QC Has for: | ||
+ | | GAATTTGTAGAAGATTGGTACTCTCAAGAATTTATGGGTAACCAG | ||
+ | |- | ||
+ | | QC has rev: | ||
+ | | AAATTCTTGAGAGTACCAATCTTCTACAAATTCGTGTAATAAAGAG | ||
+ | |- | ||
+ | | QC UDP-GlcDH for: | ||
+ | | TAATTATTAAAAACTCTGATGCTGGTAAATTATTTTTCACAACTG | ||
+ | |- | ||
+ | | QC UDP-GlcDH rev: | ||
+ | | ACCAGCATCAGAGTTTTTAATAATTAATTCATCAAGCCCAGG | ||
+ | |- | ||
+ | | QC PgmB for: | ||
+ | | TTGCAGCTGCTGATTGAGTTCTTCAG | ||
+ | |- | ||
+ | | QC PgmB rev: | ||
+ | | CTGCAAGGGATCAGCCGAGTG | ||
+ | |- | ||
+ | | QC Pgi for: | ||
+ | | AAATTCTTCTTTGTCATACTCCGTAGG | ||
+ | |- | ||
+ | | QC Pgi rev: | ||
+ | | GAATTTGCACGCATTCAAAAAAGTGC | ||
+ | |- | ||
+ | | QC GlmS for: | ||
+ | | AAATTCACTTGCTACGTGCACTTCTAC | ||
+ | |- | ||
+ | | QC GlmS rev: | ||
+ | | GAATTTTCTTATAACATGCCGCTTTTATCTG | ||
+ | |- | ||
+ | | QC GlmM for: | ||
+ | | TCGAGATCTGCAAATAAATGTGCTGC | ||
+ | |- | ||
+ | | QC GlmM for: | ||
+ | | TCTCGATGCAGATATCTCTACAATGG | ||
+ | |- | ||
+ | |<b>Sequencing</b> | ||
+ | | | ||
+ | |- | ||
+ | | pSB1C3 check for: | ||
+ | | TGCCACCTGACGTCTAAGAAACC | ||
+ | |- | ||
+ | | pSB1C3 check rev: | ||
+ | | ATTACCGCCTTTGAGTGAGCTG | ||
|- | |- | ||
+ | |||
Revision as of 12:45, 8 October 2014
Materials
1. Chemicals
Chemical | Manufacturer |
---|---|
2 log DNA ladder | New England Biolabs |
2-Mercapto Ethanol | Merck |
Acetic Acid 100% | zChL UdS |
Agar Kobe I | Roth |
Agarose | Peqlab, Biozym |
Ampicillin | Roth |
APS (Ammoniumpersulfat) | zChL UdS |
BactoTM Casamino-acids | BD |
BactoTM Tryptone | BD |
BactoTM Yeast-Extract | BD |
Boric Acid | Merck |
Bovine Serum Albumin (BSA) | New England Biolabs |
Bromophenol Blue | Merck |
Calcium Chloride | Calbiochem |
Chloramphenicol | Fagran |
D(+)-Glucose | Sigma Aldrich |
ddH2O (MilliQ) (MILLIPORE 0,22 μm Membranfilter) | Biocel |
DifcoTM Antibiotic Medium No. 3 | BD |
Dimethylsulfoxide (DMSO) | Sigma Aldrich |
dNTP-Mix (10 mM) | Peqlab |
EDTA | Roth |
Ethanol, HPLC grade | Sigma Aldrich |
Glutamate | Sigma Aldrich |
Glycerol | zChL UdS |
Hydrochloric Acid 37 % (HCl) | VWR |
Immersion Oil | Leica |
Isopropanol | Sigma Aldrich |
LB-Medium (Miller) | Sigma Aldrich |
Magnesium Chloride Hexahydrate | VWR |
Magnesium Sulfate | zChL UdS |
Maleic Acid | Roth |
Natriumchlorid | VWR |
Natriumhydroxid | Grüssing |
PEG-6000 | Merck |
peqGREEN | Peqlab |
Potassium Chloride | Grüssing |
Potassium Dihydrogen Orthophosphate | Grüssing |
Potassium Hydrogen Phosphate | Grüssing |
Potassium Sulfate | zChL UdS |
Proline | Merck |
Protein Standard | New England Biolabs |
Rotiphorese Gel 30 | Roth |
SDS | Applichem/Roth |
Succrose | Sigma Aldrich |
Temed | Applichem |
Tetracycline | Serva |
Tris-Baze | Sigma Aldrich |
Trizma Base | Sigma Aldrich |
Xylose | Sigma Aldrich |
2. Enzymes
Enzyme | Manufacturer |
---|---|
Lysozyme | Serva |
T4 Ligase | Thermo Scientific |
Taq-Polymerase | New England Biolabs |
Q5 High Fidelity Polymerase (Master Mix) | New England Biolabs |
FastDigest MluI | Thermo Scientific |
FastDigest SacI | Thermo Scientific |
FastDigest SphI | Thermo Scientific |
FastDigest EcoRI | Thermo Scientific |
FastDigest XbaI | Thermo Scientific |
FastDigest SpeI | Thermo Scientific |
FastDigest PstI | Thermo Scientific |
Fast AP | Thermo Scientific |
3. oligonucleotides
Abbreviation | 5´-Sequence-3´ |
---|---|
Generation of has2-gfp fusion gene | |
SOE Has for: | TGTACACGCGTAAATCAAGGAGGTG |
SOE Has rev: | CTCGCCCTTGCTCACCATTACATCTAATACCATATCGTATTGTTGACC |
SOE GFP for: | ATGGTATTAGATGTAATGGTGAGCAAGGGCGAG |
SOE GFP rev: | TGTACGAGCTCTTACTTGTACAGCTCGTCCATGC |
Amplification of genomic DNA of B. megaterium | |
RBS UDP-GlcDH for | TGTACGAGCTCAAATCAAGGAGGTGAATATACAATGACTAATATCACAGTAGCGGGTACTGG |
UDP-GlcDH rev: | TGTACGCATGCTTAGACATTAGCTTTAATTTTAGCTTTGTATCC |
Glk for | TGTAC GAATTC ATGGATGACAAATGGTTAG |
Glk rev: | TGTAC CTGCAG TTA TTATTCAAAATAAGAT |
PgmB for | TGTAC GAATTC ATGAAAAAAGAAGAGCTAC |
PgmB rev: | TGTAC ACTAGT TTA TTAATTTTTTGTATAC |
GtaB for | TGTAC GAATTC ATGACGATAAAAAAGGCAG |
GtaB rev: | TGTAC CTGCAG TTA TTAGCTGAAGTTGTTTGC |
Pgi for | TGTAC TCTAGA ATGACACATGTTCGTTTTG |
Pgi rev: | TGTAC CTGCAG TTA TTATTTCAAACGCTTTTC |
GlmS for | TGTAC TCTAGA ATGTGCGGAATTGTAGG |
GlmS rev: | TGTAC CTGCAG TTA TTATTCTACAGTAACTG |
GlmM for | TGTAC GAATTC ATGGGTAAGTATTTTGG |
GlmM rev: | TGTAC CTGCAG TTA TTACTCTAAGCCCATTTC |
GcaD for | TGTAC GAATTC ATGTCAAAAAGATATGC |
GcaD rev: | TGTAC CTGCAG TTA TTAGGATTTTTTATTAATATC |
Quick Change PCR for restriction site mutagenesis | |
QC Has for: | GAATTTGTAGAAGATTGGTACTCTCAAGAATTTATGGGTAACCAG |
QC has rev: | AAATTCTTGAGAGTACCAATCTTCTACAAATTCGTGTAATAAAGAG |
QC UDP-GlcDH for: | TAATTATTAAAAACTCTGATGCTGGTAAATTATTTTTCACAACTG |
QC UDP-GlcDH rev: | ACCAGCATCAGAGTTTTTAATAATTAATTCATCAAGCCCAGG |
QC PgmB for: | TTGCAGCTGCTGATTGAGTTCTTCAG |
QC PgmB rev: | CTGCAAGGGATCAGCCGAGTG |
QC Pgi for: | AAATTCTTCTTTGTCATACTCCGTAGG |
QC Pgi rev: | GAATTTGCACGCATTCAAAAAAGTGC |
QC GlmS for: | AAATTCACTTGCTACGTGCACTTCTAC |
QC GlmS rev: | GAATTTTCTTATAACATGCCGCTTTTATCTG |
QC GlmM for: | TCGAGATCTGCAAATAAATGTGCTGC |
QC GlmM for: | TCTCGATGCAGATATCTCTACAATGG |
Sequencing | |
pSB1C3 check for: | TGCCACCTGACGTCTAAGAAACC |
pSB1C3 check rev: | ATTACCGCCTTTGAGTGAGCTG |