Team:Heidelberg/js/toolboxguide

From 2014.igem.org

(Difference between revisions)
 
(10 intermediate revisions not shown)
Line 10: Line 10:
         // Whenever the value subsequently changes, slowly fade the element in or out
         // Whenever the value subsequently changes, slowly fade the element in or out
         var value = valueAccessor();
         var value = valueAccessor();
-
         var scroll = function() {$.scrollTo(element, {easing:'easeInOutCubic', duration: 800});};
+
         var scroll = function() {$.scrollTo($(document).height(), {easing:'easeInOutCubic', duration: 800});};
-
         ko.unwrap(value) ? $(element).slideDown(800, 'easeInOutCubic', scroll) : $(element).slideUp(800, 'easeInOutCubic', scroll);
+
         ko.unwrap(value) ? $(element).slideDown(400, 'easeInOutCubic', scroll) : $(element).slideUp(400, 'easeInOutCubic');
          
          
     }
     }
Line 27: Line 27:
function CircularizationViewModel(hash) {
function CircularizationViewModel(hash) {
var self = this;
var self = this;
-
self.RFCnumber = '[???]';
+
self.RFCnumber = 'i';
-
self.softwareName = '[hoffentlich nicht LinkIT]';
+
self.softwareName = ' <a href="/Team:Heidelberg/Software/Linker_Software">CRAUT</a> ';
self.availableExteins = [
self.availableExteins = [
{ N: 'RGK', C: 'CWE', comment: '', notes: ['Efficient, tested by us', 'Large scar'] },
{ N: 'RGK', C: 'CWE', comment: '', notes: ['Efficient, tested by us', 'Large scar'] },
Line 39: Line 39:
self.data = {
self.data = {
comingBack: data ? data.comingBack : false,
comingBack: data ? data.comingBack : false,
 +
q9A: ko.observable(data ? data.q9A : false), //Inserted Question at beginning
 +
gotProteinStructure: ko.observable(data && data.gotProteinStructure),
q0A: ko.observable(data ? data.q0A : false),
q0A: ko.observable(data ? data.q0A : false),
hasBsaI: ko.observable(data && data.hasBsaI),
hasBsaI: ko.observable(data && data.hasBsaI),
Line 53: Line 55:
q6A: ko.observable(data ? data.q6A : false),
q6A: ko.observable(data ? data.q6A : false),
testSeveral: ko.observable(data && data.testSeveral),
testSeveral: ko.observable(data && data.testSeveral),
 +
q7A: ko.observable(data ? data.q7A : false),
 +
proteinSize: ko.observable(data && data.proteinSize)
};
};
Line 86: Line 90:
}
}
-
var vm = new CircularizationViewModel(window.location.hash);
+
function TaggingViewModel() {
-
ko.applyBindings(vm);
+
var self = this;
 +
 
 +
self.RFCNumber = "i";
 +
self.EColiTags = [
 +
{
 +
tagname: "MinD MTS",
 +
Biobrick: "BBa_K1362055",
 +
descr: "membrane localization",
 +
askFirstStop: true
 +
 
 +
},
 +
{
 +
tagname: "OmpA",
 +
Biobrick: "BBa_K1362060",
 +
descr: "surface display",
 +
askFirstStop: false
 +
},
 +
{
 +
tagname: "pelB",
 +
Biobrick: "BBa_K1362058",
 +
descr: "periplasmic localization",
 +
askFirstStop: false
 +
 
 +
}
 +
];
 +
 
 +
self.EucarioticTags = [
 +
{
 +
tagname: "myristoilation signal sequence",
 +
Biobrick: "BBa_K1362056",
 +
descr: "membrane localization",
 +
askFirstStop: false
 +
},
 +
{
 +
tagname: "PKI-NES",
 +
Biobrick: "BBa_K1362059",
 +
descr: "cytoplasmic localization",
 +
askFirstStop: false
 +
},
 +
{
 +
tagname: "NLS",
 +
Biobrick: "BBa_K1362057",
 +
descr: "nuclear localization",
 +
askFirstStop: false
 +
}
 +
];
 +
 
 +
self.customTag =
 +
{
 +
tagname: "Custom",
 +
Biobrick: "none",
 +
descr: "Your personal tag",
 +
askFirstStop: true
 +
};
 +
var data;
 +
self.data = {
 +
q0A: ko.observable(false),
 +
hasBSAI: ko.observable(),
 +
 
 +
q1A: ko.observable(false),
 +
isiGEMHD: ko.observable(),
 +
 
 +
q2A: ko.observable(false),
 +
inEColi: ko.observable(),
 +
 
 +
q3A: ko.observable(false),
 +
selectedTag: ko.observable(),
 +
 
 +
q4A: ko.observable(false),
 +
addTag: ko.observable(true),
 +
 
 +
q5A: ko.observable(false),
 +
terminus: ko.observable(),
 +
 
 +
q6A: ko.observable(false),
 +
methionin: ko.observable(),
 +
 
 +
q7A: ko.observable(false),
 +
stopCodon: ko.observable(),
 +
 
 +
q8A: ko.observable(false),
 +
lightInduced: ko.observable(),
 +
 +
 +
};
 +
}
 +
 
 +
function SyntheticViewModel() {
 +
var self = this;
 +
 
 +
self.RFCNumber = "i";
 +
 
 +
self.data = {
 +
q0A: ko.observable(false),
 +
hasBSAI: ko.observable(),
 +
 
 +
q1A: ko.observable(false),
 +
isNterminal: ko.observable(),
 +
 
 +
q2A: ko.observable(false),
 +
methionin: ko.observable()
 +
};
 +
 
 +
}
 +
 
 +
function PurificationViewModel() {
 +
var self = this;
 +
 
 +
self.RFCNumber = "i";
 +
 
 +
self.data = {
 +
q0A: ko.observable(false),
 +
hasBSAI: ko.observable()
 +
};
 +
 
 +
}

Latest revision as of 03:24, 18 October 2014

"use strict";jQuery.base64=(function($){var _PADCHAR="=",_ALPHA="ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/",_VERSION="1.0";function _getbyte64(s,i){var idx=_ALPHA.indexOf(s.charAt(i));if(idx===-1){throw"Cannot decode base64"}return idx}function _decode(s){var pads=0,i,b10,imax=s.length,x=[];s=String(s);if(imax===0){return s}if(imax%4!==0){throw"Cannot decode base64"}if(s.charAt(imax-1)===_PADCHAR){pads=1;if(s.charAt(imax-2)===_PADCHAR){pads=2}imax-=4}for(i=0;i<imax;i+=4){b10=(_getbyte64(s,i)<<18)|(_getbyte64(s,i+1)<<12)|(_getbyte64(s,i+2)<<6)|_getbyte64(s,i+3);x.push(String.fromCharCode(b10>>16,(b10>>8)&255,b10&255))}switch(pads){case 1:b10=(_getbyte64(s,i)<<18)|(_getbyte64(s,i+1)<<12)|(_getbyte64(s,i+2)<<6);x.push(String.fromCharCode(b10>>16,(b10>>8)&255));break;case 2:b10=(_getbyte64(s,i)<<18)|(_getbyte64(s,i+1)<<12);x.push(String.fromCharCode(b10>>16));break}return x.join("")}function _getbyte(s,i){var x=s.charCodeAt(i);if(x>255){throw"INVALID_CHARACTER_ERR: DOM Exception 5"}return x}function _encode(s){if(arguments.length!==1){throw"SyntaxError: exactly one argument required"}s=String(s);var i,b10,x=[],imax=s.length-s.length%3;if(s.length===0){return s}for(i=0;i<imax;i+=3){b10=(_getbyte(s,i)<<16)|(_getbyte(s,i+1)<<8)|_getbyte(s,i+2);x.push(_ALPHA.charAt(b10>>18));x.push(_ALPHA.charAt((b10>>12)&63));x.push(_ALPHA.charAt((b10>>6)&63));x.push(_ALPHA.charAt(b10&63))}switch(s.length-imax){case 1:b10=_getbyte(s,i)<<16;x.push(_ALPHA.charAt(b10>>18)+_ALPHA.charAt((b10>>12)&63)+_PADCHAR+_PADCHAR);break;case 2:b10=(_getbyte(s,i)<<16)|(_getbyte(s,i+1)<<8);x.push(_ALPHA.charAt(b10>>18)+_ALPHA.charAt((b10>>12)&63)+_ALPHA.charAt((b10>>6)&63)+_PADCHAR);break}return x.join("")}return{decode:_decode,encode:_encode,VERSION:_VERSION}}(jQuery));

ko.bindingHandlers.fadeVisible = {

   init: function(element, valueAccessor) {
       // Initially set the element to be instantly visible/hidden depending on the value
       var value = valueAccessor();
       $(element).toggle(ko.unwrap(value)); // Use "unwrapObservable" so we can handle values that may or may not be observable
   },
   update: function(element, valueAccessor) {
       // Whenever the value subsequently changes, slowly fade the element in or out
       var value = valueAccessor();
       var scroll = function() {$.scrollTo($(document).height(), {easing:'easeInOutCubic', duration: 800});};
       ko.unwrap(value) ? $(element).slideDown(400, 'easeInOutCubic', scroll) : $(element).slideUp(400, 'easeInOutCubic');
       
   }

};


$(document).ready(function() { $('#pagename').text(wgPageName); $('#copy-to-clip').click(function() { window.prompt("Copy to clipboard: Ctrl+C, Enter", $('#comebackurl').text()); });

});

function CircularizationViewModel(hash) { var self = this; self.RFCnumber = 'i'; self.softwareName = ' <a href="/Team:Heidelberg/Software/Linker_Software">CRAUT</a> '; self.availableExteins = [ { N: 'RGK', C: 'CWE', comment: , notes: ['Efficient, tested by us', 'Large scar'] }, { N: 'RGT', C: 'CWE', comment: , notes: ['Efficient, tested by us', 'Large scar'] }, { N: 'AEY', C: 'CFN' , comment: , notes: ['Efficient, native extein', 'Large scar'] }, { N: 'XXX', C: 'CXX', comment: 'X = native amino acids of the protein', notes: ['Probably less efficient (depends on the protein)', 'Small scar'] }, ];

var data = hash && $.parseJSON($.base64.decode(hash.substr(1))); self.data = { comingBack: data ? data.comingBack : false, q9A: ko.observable(data ? data.q9A : false), //Inserted Question at beginning gotProteinStructure: ko.observable(data && data.gotProteinStructure), q0A: ko.observable(data ? data.q0A : false), hasBsaI: ko.observable(data && data.hasBsaI), q1A: ko.observable(data ? data.q1A : false), useSortase: ko.observable(data && data.useSortase), q2A: ko.observable(data ? data.q2A : false), needsSmt3: ko.observable(data && data.needsSmt3), q3A: ko.observable(data ? data.q3A : false), exteins: ko.observable(data && data.exteins), q4A: ko.observable(data ? data.q4A : false), endsAreClose: ko.observable(data && data.endsAreClose), q5A: ko.observable(data ? data.q5A : false), linkerLength: ko.observable(data && data.linkerLength), q6A: ko.observable(data ? data.q6A : false), testSeveral: ko.observable(data && data.testSeveral), q7A: ko.observable(data ? data.q7A : false), proteinSize: ko.observable(data && data.proteinSize) };

self.hash = ko.computed(function () { self.data.q0A(); self.data.q1A(); self.data.q2A(); self.data.q3A(); self.data.q4A(); self.data.q5A(); self.data.q6A(); self.data.hasBsaI(); self.data.useSortase(); self.data.needsSmt3(); self.data.exteins(); self.data.endsAreClose(); self.data.linkerLength(); self.data.testSeveral();

window.location.hash = $.base64.encode(ko.toJSON(self.data)); console.log(window.location.hash, ko.toJSON(self.data)); return window.location.hash;

});

self.comeBackHash = ko.computed(function () { var tmp = self.data.comingBack; self.data.comingBack = true; var hash = $.base64.encode(ko.toJSON(self.data)); self.data.comingBack = tmp; return hash; }); }

function TaggingViewModel() { var self = this;

self.RFCNumber = "i"; self.EColiTags = [ { tagname: "MinD MTS", Biobrick: "BBa_K1362055", descr: "membrane localization", askFirstStop: true

}, { tagname: "OmpA", Biobrick: "BBa_K1362060", descr: "surface display", askFirstStop: false }, { tagname: "pelB", Biobrick: "BBa_K1362058", descr: "periplasmic localization", askFirstStop: false

} ];

self.EucarioticTags = [ { tagname: "myristoilation signal sequence", Biobrick: "BBa_K1362056", descr: "membrane localization", askFirstStop: false }, { tagname: "PKI-NES", Biobrick: "BBa_K1362059", descr: "cytoplasmic localization", askFirstStop: false }, { tagname: "NLS", Biobrick: "BBa_K1362057", descr: "nuclear localization", askFirstStop: false } ];

self.customTag = { tagname: "Custom", Biobrick: "none", descr: "Your personal tag", askFirstStop: true }; var data; self.data = { q0A: ko.observable(false), hasBSAI: ko.observable(),

q1A: ko.observable(false), isiGEMHD: ko.observable(),

q2A: ko.observable(false), inEColi: ko.observable(),

q3A: ko.observable(false), selectedTag: ko.observable(),

q4A: ko.observable(false), addTag: ko.observable(true),

q5A: ko.observable(false), terminus: ko.observable(),

q6A: ko.observable(false), methionin: ko.observable(),

q7A: ko.observable(false), stopCodon: ko.observable(),

q8A: ko.observable(false), lightInduced: ko.observable(),


}; }

function SyntheticViewModel() { var self = this;

self.RFCNumber = "i";

self.data = { q0A: ko.observable(false), hasBSAI: ko.observable(),

q1A: ko.observable(false), isNterminal: ko.observable(),

q2A: ko.observable(false), methionin: ko.observable() };

}

function PurificationViewModel() { var self = this;

self.RFCNumber = "i";

self.data = { q0A: ko.observable(false), hasBSAI: ko.observable() };

}