Team:Goettingen/project overview/project wetlab
From 2014.igem.org
Project
Wet lab
Approach
Our experimental approach can be summarized as follows:
1. Organism and surface protein selection
2. Surface protein amplification and cloning
3. Yeast two-hybrid assay with an existing peptide library
4. Peptide functionalization
Results summary
Number | Gene | Organism | pIGA (pDONR+GOI in E.coli) | pIGB (pDEST+GOI for AH109) | AIG (derived from AH109) | Y2H (interaction partners) | pIGZ (p1170 from diploid cells for E.coli) | pIGY (p1170 from E.coli for Y187) | YIG (derived from Y187) | PepTag |
---|---|---|---|---|---|---|---|---|---|---|
1 | mp65 | N/A | X | X | X | X | ||||
2 | tos1 | N/A | X | X | X | X | ||||
3 | sim1 | N/A | X | X | X | X | ||||
4 | ssr1 | N/A | X | X | X | X | ||||
5 | pir4 | N/A | X | X | X | X | ||||
6 | scw4 | N/A | X | X | X | X | ||||
7 | pir3 | N/A | X | X | N/A | N/A | ||||
8 | utr2 | N/A | X | X | N/A | N/A | ||||
9 | crf2full | A. fumigatus | X | X | X | X | ||||
10 | crf2act | A. fumigatus | X | X | X | X | ||||
11 | bglEno | A. fumigatus | X | N/A | N/A | N/A | ||||
12 | ecm33 | A. fumigatus | X | X | X | X | ||||
13 | sun1 | A. fumigatus | X | X | X | X | ||||
14 | als1 | N/A | X | X | X | X | ||||
15 | als3 | N/A | X | X | X | X | ||||
16 | rodA | A. fumigatus | X | X | N/A | N/A | ||||
17 | rodA | A. nidulans | X | X | X | X | ||||
18 | xlnA | A. nidulans | X | X | X | X | ||||
19 | npc2 | A. nidulans | X | X | X | X | ||||
20 | sho1 | A. nidulans | X | X | X | X | ||||
21 | MID2 | S. cerevisiae | X | X | X | X | ||||
22 | SED1 | S. cerevisiae | X | X | X | X | ||||
23 | prm1 B | A. fumigatus | X | X | N/A | N/A | ||||
24 | crf1 | A. fumigatus | X | X | X | X | ||||
25 | ama1 | T. gondii | X | X | X | X | ||||
26 | eglC | A. fumigatus | X | N/A | N/A | N/A | ||||
27 | CWP1 | S. cerevisiae | X | X | N/A | N/A | ||||
28 | CWP2 | S. cerevisiae | X | X | N/A | N/A | ||||
29 | TIR4 | S. cerevisiae | X | N/A | N/A | N/A | ||||
30 | rom5 | T. gondii | X | N/A | N/A | N/A | ||||
31 | rom4 | T. gondii | X | N/A | N/A | N/A | ||||
32 | gra7 | T. gondii | X | N/A | N/A | N/A | ||||
33 | eglC | A. nidulans | X | N/A | N/A | N/A | ||||
34 | TIR1 | S. cerevisiae | X | X | N/A | N/A | ||||
35 | bglEex | A. fumigatus | X | X | N/A | N/A |
Number | Gene | Organism | pIGA (pDONR+GOI in E.coli) | pIGB (pDEST+GOI for AH109) | AIG (derived from AH109) | Y2H (interaction partners) | pIGZ (p1170 from diploid cells for E.coli) | pIGY (p1170 from E.coli for Y187) | YIG (derived from Y187) | PepTag |
---|---|---|---|---|---|---|---|---|---|---|
1 | X | |||||||||
1 | X | X | ||||||||
1 | X | X | X | |||||||
1 | X | X | X | |||||||
2 | X | |||||||||
2 | X | X | ||||||||
2 | X | X | X | |||||||
2 | X | X | X | |||||||
3 | X | |||||||||
3 | X | X | ||||||||
3 | X | X | X | |||||||
3 | X | X | X | |||||||
4 | X | |||||||||
4 | X | X | ||||||||
4 | X | X | X | |||||||
4 | X | X | X | X | ||||||
5 | X | |||||||||
5 | X | X | ||||||||
5 | X | X | X | |||||||
5 | X | X | X | X | ||||||
6 | X | |||||||||
6 | X | X | ||||||||
6 | X | X | X | |||||||
6 | X | X | X | |||||||
7 | N/A | |||||||||
7 | N/A | N/A | ||||||||
7 | N/A | N/A | N/A | |||||||
7 | N/A | N/A | N/A | |||||||
8 | N/A | |||||||||
8 | N/A | N/A | ||||||||
8 | N/A | N/A | N/A | |||||||
8 | N/A | N/A | N/A | |||||||
9 | X | |||||||||
9 | X | X | ||||||||
9 | X | X | X | |||||||
9 | X | X | X | |||||||
10 | X | |||||||||
10 | X | X | ||||||||
10 | X | X | X | |||||||
10 | X | X | X | |||||||
11 | N/A | |||||||||
11 | N/A | N/A | ||||||||
11 | N/A | N/A | N/A | |||||||
11 | N/A | N/A | N/A | |||||||
12 | X | |||||||||
12 | X | X | ||||||||
12 | X | X | X | |||||||
12 | X | X | X | |||||||
13 | X | |||||||||
13 | X | X | ||||||||
13 | X | X | X | |||||||
13 | X | X | X | X | ||||||
14 | X | |||||||||
14 | X | X | ||||||||
14 | X | X | X | |||||||
14 | X | X | X | |||||||
15 | X | |||||||||
15 | X | X | ||||||||
15 | X | X | X | |||||||
15 | X | X | X | |||||||
16 | N/A | |||||||||
16 | N/A | N/A | ||||||||
16 | N/A | N/A | N/A | |||||||
16 | N/A | N/A | N/A | |||||||
17 | X | |||||||||
17 | X | X | ||||||||
17 | X | X | X | |||||||
17 | X | X | X | |||||||
18 | N/A | |||||||||
18 | N/A | N/A | ||||||||
18 | N/A | N/A | N/A | |||||||
18 | N/A | N/A | N/A | |||||||
19 | X | |||||||||
19 | X | X | ||||||||
19 | X | X | X | |||||||
19 | X | X | X | |||||||
20 | N/A | |||||||||
20 | N/A | N/A | ||||||||
20 | N/A | N/A | N/A | |||||||
20 | N/A | N/A | N/A | |||||||
21 | X | |||||||||
21 | X | X | ||||||||
21 | X | X | X | |||||||
21 | X | X | X | |||||||
22 | N/A | |||||||||
22 | N/A | N/A | ||||||||
22 | N/A | N/A | N/A | |||||||
22 | N/A | N/A | N/A | |||||||
23 | N/A | |||||||||
23 | N/A | N/A | ||||||||
23 | N/A | N/A | N/A | |||||||
23 | N/A | N/A | N/A | |||||||
24 | X | |||||||||
24 | X | X | ||||||||
24 | X | X | X | |||||||
24 | X | X | X | |||||||
25 | X | |||||||||
25 | X | X | ||||||||
25 | X | X | X | |||||||
25 | X | X | X | |||||||
26 | N/A | |||||||||
26 | N/A | N/A | ||||||||
26 | N/A | N/A | N/A | |||||||
26 | N/A | N/A | N/A | |||||||
27 | N/A | |||||||||
27 | N/A | N/A | ||||||||
27 | N/A | N/A | N/A | |||||||
27 | N/A | N/A | N/A | |||||||
28 | N/A | |||||||||
28 | N/A | N/A | ||||||||
28 | N/A | N/A | N/A | |||||||
28 | N/A | N/A | N/A | |||||||
29 | N/A | |||||||||
29 | N/A | N/A | ||||||||
29 | N/A | N/A | N/A | |||||||
29 | N/A | N/A | N/A | |||||||
30 | N/A | |||||||||
30 | N/A | N/A | ||||||||
30 | N/A | N/A | N/A | |||||||
30 | N/A | N/A | N/A | |||||||
31 | N/A | |||||||||
31 | N/A | N/A | ||||||||
31 | N/A | N/A | N/A | |||||||
31 | N/A | N/A | N/A | |||||||
32 | N/A | |||||||||
32 | N/A | N/A | ||||||||
32 | N/A | N/A | N/A | |||||||
32 | N/A | N/A | N/A | |||||||
33 | N/A | |||||||||
33 | N/A | N/A | ||||||||
33 | N/A | N/A | N/A | |||||||
33 | N/A | N/A | N/A | |||||||
34 | N/A | |||||||||
34 | N/A | N/A | ||||||||
34 | N/A | N/A | N/A | |||||||
34 | N/A | N/A | N/A | |||||||
35 | N/A | |||||||||
35 | N/A | N/A | ||||||||
35 | N/A | N/A | N/A | |||||||
35 | N/A | N/A | N/A |