Team:Goettingen/project overview/project wetlab

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Wet lab

Approach

Our experimental approach can be summarized as follows:


  1. 1. Organism and surface protein selection

  2. 2. Surface protein amplification and cloning

  3. 3. Yeast two-hybrid assay with an existing peptide library

  4. 4. Peptide functionalization



Click to enlarge


Results summary


Number Gene Organism pIGA (pDONR+GOI in E.coli) pIGB (pDEST+GOI for AH109) AIG (derived from AH109) Y2H (interaction partners) pIGZ (p1170 from diploid cells for E.coli) pIGY (p1170 from E.coli for Y187) YIG (derived from Y187) PepTag
1mp65N/AXXXX
2tos1N/AXXXX
3sim1N/AXXXX
4ssr1N/AXXXX
5pir4N/AXXXX
6scw4N/AXXXX
7pir3N/AXXN/AN/A
8utr2N/AXXN/AN/A
9crf2fullA. fumigatusXXXX
10crf2actA. fumigatusXXXX
11bglEnoA. fumigatusXN/AN/AN/A
12ecm33A. fumigatusXXXX
13sun1A. fumigatusXXXX
14als1N/AXXXX
15als3N/AXXXX
16rodAA. fumigatusXXN/AN/A
17rodAA. nidulansXXXX
18xlnAA. nidulansXXXX
19npc2A. nidulansXXXX
20sho1A. nidulansXXXX
21MID2S. cerevisiaeXXXX
22SED1S. cerevisiaeXXXX
23prm1 BA. fumigatusXXN/AN/A
24crf1A. fumigatusXXXX
25ama1T. gondiiXXXX
26eglCA. fumigatusXN/AN/AN/A
27CWP1S. cerevisiaeXXN/AN/A
28CWP2S. cerevisiaeXXN/AN/A
29TIR4S. cerevisiaeXN/AN/AN/A
30rom5T. gondiiXN/AN/AN/A
31rom4T. gondiiXN/AN/AN/A
32gra7T. gondiiXN/AN/AN/A
33eglCA. nidulansXN/AN/AN/A
34TIR1S. cerevisiaeXXN/AN/A
35bglEexA. fumigatusXXN/AN/A
Number Gene Organism pIGA (pDONR+GOI in E.coli) pIGB (pDEST+GOI for AH109) AIG (derived from AH109) Y2H (interaction partners) pIGZ (p1170 from diploid cells for E.coli) pIGY (p1170 from E.coli for Y187) YIG (derived from Y187) PepTag
1X
1X
X
1X
X
X
1X
X
X
2X
2X
X
2X
X
X
2X
X
X
3X
3X
X
3X
X
X
3X
X
X
4X
4X
X
4X
X
X
4X
X
X
X
5X
5X
X
5X
X
X
5X
X
X
X
6X
6X
X
6X
X
X
6X
X
X
7N/A
7N/A
N/A
7N/A
N/A
N/A
7N/A
N/A
N/A
8N/A
8N/A
N/A
8N/A
N/A
N/A
8N/A
N/A
N/A
9X
9X
X
9X
X
X
9X
X
X
10X
10X
X
10X
X
X
10X
X
X
11N/A
11N/A
N/A
11N/A
N/A
N/A
11N/A
N/A
N/A
12X
12X
X
12X
X
X
12X
X
X
13X
13X
X
13X
X
X
13X
X
X
X
14X
14X
X
14X
X
X
14X
X
X
15X
15X
X
15X
X
X
15X
X
X
16N/A
16N/A
N/A
16N/A
N/A
N/A
16N/A
N/A
N/A
17X
17X
X
17X
X
X
17X
X
X
18N/A
18N/A
N/A
18N/A
N/A
N/A
18N/A
N/A
N/A
19X
19X
X
19X
X
X
19X
X
X
20N/A
20N/A
N/A
20N/A
N/A
N/A
20N/A
N/A
N/A
21X
21X
X
21X
X
X
21X
X
X
22N/A
22N/A
N/A
22N/A
N/A
N/A
22N/A
N/A
N/A
23N/A
23N/A
N/A
23N/A
N/A
N/A
23N/A
N/A
N/A
24X
24X
X
24X
X
X
24X
X
X
25X
25X
X
25X
X
X
25X
X
X
26N/A
26N/A
N/A
26N/A
N/A
N/A
26N/A
N/A
N/A
27N/A
27N/A
N/A
27N/A
N/A
N/A
27N/A
N/A
N/A
28N/A
28N/A
N/A
28N/A
N/A
N/A
28N/A
N/A
N/A
29N/A
29N/A
N/A
29N/A
N/A
N/A
29N/A
N/A
N/A
30N/A
30N/A
N/A
30N/A
N/A
N/A
30N/A
N/A
N/A
31N/A
31N/A
N/A
31N/A
N/A
N/A
31N/A
N/A
N/A
32N/A
32N/A
N/A
32N/A
N/A
N/A
32N/A
N/A
N/A
33N/A
33N/A
N/A
33N/A
N/A
N/A
33N/A
N/A
N/A
34N/A
34N/A
N/A
34N/A
N/A
N/A
34N/A
N/A
N/A
35N/A
35N/A
N/A
35N/A
N/A
N/A
35N/A
N/A
N/A