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Dry lab

Results summary:

This is peptide IGP4 that shows interaction with ssr1 protein from Candida glabrata

We obtained working structural models for our peptides inside their scaffolds. The following table is a summary of them. Please note that these models are not definitive, since they were obtained by homology modeling and loop refinement. Their main purpose is to give us an idea if the calculated energy profile matches our assumption that the peptide is being exposed to the exterior of the scaffold.

Peptide	PNG*	PDB	Description	Peptide location	Overall DOPE score	Energy profile
Prey 3		Download	Interacting with Sim1 protein of Candida albicans	K17-E42	-6637.57959	Download
Prey 4.1		Download	Interacting with Ssr1(CAGL0H06413g) protein of Candida glabrata	K17-E44	-6253.714355	Download
Prey 5		Download	Interacting with Pir4 (CAGL0I06160g) protein of Candida glabrata	K17-E44	-6363.106934	Download
Prey 13		Download	Interacting with Sun1 protein of Aspergillus fumigatus	K17-E42	-6283.989258	Download
Prey 15		Download	Interacting with Als3 protein of Candida albicans	K17-E42	-6786.918457	Download

*The peptide is shown in red and the scaffold in blue.

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