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Team:Goettingen/project overview/project drylab results
From 2014.igem.org
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| - | <br /><h2 | + | <br /><h2>Results summary<br /><br /> |
<p>We obtained working structural models for our peptides inside their scaffolds. The following table is a summary of them. Please note that these models are not definitive, since they were obtained by homology modeling and loop refinement. Their main purpose is to give us an idea if the calculated energy profile matches our assumption that the peptide is being exposed to the exterior of the scaffold.</p><br /> | <p>We obtained working structural models for our peptides inside their scaffolds. The following table is a summary of them. Please note that these models are not definitive, since they were obtained by homology modeling and loop refinement. Their main purpose is to give us an idea if the calculated energy profile matches our assumption that the peptide is being exposed to the exterior of the scaffold.</p><br /> | ||
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| - | < | + | <p>This is peptide IGP4 that shows interaction with ssr1 protein from <i> Candida glabrata</i><br /> |
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<center><iframe width="200" src="//www.youtube.com/embed/_SblUolgVQI" frameborder="0" allowfullscreen></iframe></center> | <center><iframe width="200" src="//www.youtube.com/embed/_SblUolgVQI" frameborder="0" allowfullscreen></iframe></center> | ||
Revision as of 11:16, 2 October 2014
Project
Dry lab
Results summary
We obtained working structural models for our peptides inside their scaffolds. The following table is a summary of them. Please note that these models are not definitive, since they were obtained by homology modeling and loop refinement. Their main purpose is to give us an idea if the calculated energy profile matches our assumption that the peptide is being exposed to the exterior of the scaffold.
| Peptide | PNG* | PDB | Peptide location | QMEAN score | Overall DOPE score | Energy profile |
| Prey 3 |  |
Download | K17-E42 | 0.512 | -7053.966797 | Download |
| Prey 4.1 |  |
Download | K17-E44 | 0.468 | -7246.956055 | Download |
| Prey 5 |  |
Download | K17-E44 | 0.495 | -7501.071777 | Download |
| Prey 13 |  |
Download | K17-E42 | 0.535 | -7729.056152 | Download |
| Prey 15 |  |
Download | K17-E42 | 0.447 | -7671.660156 | Download |
*The peptide is shown in red and the scaffold in blue.
This is peptide IGP4 that shows interaction with ssr1 protein from Candida glabrata
