Team:Goettingen/project overview/project drylab results

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<td style="font-size:80%;" height=100>Interacting with Als3 protein of <i>Candida albicans</i></td>
<td style="font-size:80%;" height=100>Interacting with Als3 protein of <i>Candida albicans</i></td>
<td style="font-size:80%;">K17-E42</td>
<td style="font-size:80%;">K17-E42</td>
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<td style="font-size:80%;"QMEAN</td>
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<td style="font-size:80%;">QMEAN</td>
<td style="font-size:80%;">-7671.660156</td>
<td style="font-size:80%;">-7671.660156</td>
<td><a href="https://static.igem.org/mediawiki/2014/2/20/GoettingenPrey15-profile.txt" target="1">Download</a></td>
<td><a href="https://static.igem.org/mediawiki/2014/2/20/GoettingenPrey15-profile.txt" target="1">Download</a></td>

Revision as of 09:36, 29 September 2014

Project

10/15



Dry lab


Results summary:

We obtained working structural models for our peptides inside their scaffolds. The following table is a summary of them. Please note that these models are not definitive, since they were obtained by homology modeling and loop refinement. Their main purpose is to give us an idea if the calculated energy profile matches our assumption that the peptide is being exposed to the exterior of the scaffold.


Peptide PNG* PDB Description Peptide location QMEAN Overall DOPE score Energy profile
Prey 3 Download Interacting with Sim1 protein of Candida albicans K17-E42 QMEAN -7053.966797 Download
Prey 4.1 Download Interacting with Ssr1(CAGL0H06413g) protein of Candida glabrata K17-E44 QMEAN -7246.956055 Download
Prey 5 Download Interacting with Pir4 (CAGL0I06160g) protein of Candida glabrata K17-E44 QMEAN -7501.071777 Download
Prey 13 Download Interacting with Sun1 protein of Aspergillus fumigatus K17-E42 QMEAN -7729.056152 Download
Prey 15 Download Interacting with Als3 protein of Candida albicans K17-E42 QMEAN -7671.660156 Download
*The peptide is shown in red and the scaffold in blue.


This is peptide IGP4 that shows interaction with ssr1 protein from Candida glabrata





10/15

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