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Team:Goettingen/project overview/project drylab results
From 2014.igem.org
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<td><a href="https://static.igem.org/mediawiki/2014/6/62/Goettingen-Prey3.png" target="1"><img src="https://static.igem.org/mediawiki/2014/6/62/Goettingen-Prey3.png" width=100></a></td> | <td><a href="https://static.igem.org/mediawiki/2014/6/62/Goettingen-Prey3.png" target="1"><img src="https://static.igem.org/mediawiki/2014/6/62/Goettingen-Prey3.png" width=100></a></td> | ||
<td><a href="https://static.igem.org/mediawiki/2014/1/1e/Goettingen-Prey3-input.txt" target="1">Download</a></td> | <td><a href="https://static.igem.org/mediawiki/2014/1/1e/Goettingen-Prey3-input.txt" target="1">Download</a></td> | ||
| - | <td style="font-size:80%;"> | + | <td style="font-size:80%;">Interacting with Sim1 protein of <i>Candida albicans</i></td> |
<td>K17-E42</td> | <td>K17-E42</td> | ||
<td>-6637.57959</td> | <td>-6637.57959</td> | ||
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<td><a href="https://static.igem.org/mediawiki/2014/6/6e/Goettingen-Prey4-1.png" target="1"><img src="https://static.igem.org/mediawiki/2014/6/6e/Goettingen-Prey4-1.png" width=100></a></td> | <td><a href="https://static.igem.org/mediawiki/2014/6/6e/Goettingen-Prey4-1.png" target="1"><img src="https://static.igem.org/mediawiki/2014/6/6e/Goettingen-Prey4-1.png" width=100></a></td> | ||
<td><a href="https://static.igem.org/mediawiki/2014/1/1b/Goettingen-Prey4-1.txt" target="1">Download</a></td> | <td><a href="https://static.igem.org/mediawiki/2014/1/1b/Goettingen-Prey4-1.txt" target="1">Download</a></td> | ||
| - | <td style="font-size:80%;"> | + | <td style="font-size:80%;">Interacting with Ssr1(CAGL0H06413g) protein of <i>Candida glabrata</i></td> |
<td>K17-E44</td> | <td>K17-E44</td> | ||
<td>-6253.714355</td> | <td>-6253.714355</td> | ||
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<td><a href="https://static.igem.org/mediawiki/2014/4/4e/Goettingen-Prey5.png" target="1"><img src="https://static.igem.org/mediawiki/2014/4/4e/Goettingen-Prey5.png" width=100></a></td> | <td><a href="https://static.igem.org/mediawiki/2014/4/4e/Goettingen-Prey5.png" target="1"><img src="https://static.igem.org/mediawiki/2014/4/4e/Goettingen-Prey5.png" width=100></a></td> | ||
<td><a href="https://static.igem.org/mediawiki/2014/8/86/Goettingen-Prey5.txt" target="1">Download</a></td> | <td><a href="https://static.igem.org/mediawiki/2014/8/86/Goettingen-Prey5.txt" target="1">Download</a></td> | ||
| - | <td style="font-size:80%;"> | + | <td style="font-size:80%;">Interacting with Pir4 (CAGL0I06160g) protein of <i>Candida glabrata</i></td> |
<td>K17-E44</td> | <td>K17-E44</td> | ||
<td>-6363.106934</td> | <td>-6363.106934</td> | ||
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<td><a href="https://static.igem.org/mediawiki/2014/1/1c/Prey13.png" target="1"><img src="https://static.igem.org/mediawiki/2014/1/1c/Prey13.png" width=100></a></td> | <td><a href="https://static.igem.org/mediawiki/2014/1/1c/Prey13.png" target="1"><img src="https://static.igem.org/mediawiki/2014/1/1c/Prey13.png" width=100></a></td> | ||
<td><a href="https://static.igem.org/mediawiki/2014/8/8e/Goettingen-Prey13-input.txt" target="1">Download</a></td> | <td><a href="https://static.igem.org/mediawiki/2014/8/8e/Goettingen-Prey13-input.txt" target="1">Download</a></td> | ||
| - | <td style="font-size:80%;"> | + | <td style="font-size:80%;">Interacting with Sun1 protein of <i>Aspergillus fumigatus</i></td> |
<td>K17-E42</td> | <td>K17-E42</td> | ||
<td>-6283.989258</td> | <td>-6283.989258</td> | ||
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<td><a href="https://static.igem.org/mediawiki/2014/4/41/Prey15.png"><img src="https://static.igem.org/mediawiki/2014/4/41/Prey15.png" target="1" width=100></a></td> | <td><a href="https://static.igem.org/mediawiki/2014/4/41/Prey15.png"><img src="https://static.igem.org/mediawiki/2014/4/41/Prey15.png" target="1" width=100></a></td> | ||
<td><a href="https://static.igem.org/mediawiki/2014/7/77/Goettingen-Prey15-input.txt" target="1">Download</a></td> | <td><a href="https://static.igem.org/mediawiki/2014/7/77/Goettingen-Prey15-input.txt" target="1">Download</a></td> | ||
| - | <td style="font-size:80%;"> | + | <td style="font-size:80%;">Interacting with Als3 protein of <i>Candida albicans</i></td> |
<td>K17-E42</td> | <td>K17-E42</td> | ||
<td>-6786.918457</td> | <td>-6786.918457</td> | ||
Revision as of 10:46, 24 September 2014
Project
10/15 
Dry lab
Results summary:
This is peptide IGP4 that shows interaction with ssr1 protein from Candida glabrata
This is peptide IGP4 that shows interaction with ssr1 protein from Candida glabrata
We obtained working structural models for our peptides inside their scaffolds. The following table is a summary of them. Please note that these models are not definitive, since they were obtained by homology modeling and loop refinement. Their main purpose is to give us an idea if the calculated energy profile matches our assumption that the peptide is being exposed to the exterior of the scaffold.
| Peptide | PNG* | PDB | Description | Peptide location | Overall DOPE score | Energy profile |
| Prey 3 |  |
Download | Interacting with Sim1 protein of Candida albicans | K17-E42 | -6637.57959 | Download |
| Prey 4.1 |  |
Download | Interacting with Ssr1(CAGL0H06413g) protein of Candida glabrata | K17-E44 | -6253.714355 | Download |
| Prey 5 |  |
Download | Interacting with Pir4 (CAGL0I06160g) protein of Candida glabrata | K17-E44 | -6363.106934 | Download |
| Prey 13 |  |
Download | Interacting with Sun1 protein of Aspergillus fumigatus | K17-E42 | -6283.989258 | Download |
| Prey 15 |  |
Download | Interacting with Als3 protein of Candida albicans | K17-E42 | -6786.918457 | Download |
10/15 
