Template:Team:Waterloo/Modeling/Citations

From 2014.igem.org

(Difference between revisions)
Line 10: Line 10:
     <tr>
     <tr>
       <td>
       <td>
-
         <b id="Citation_Brandt2009">[2]</b>Florian Brandt et al. “The Native 3D Organization of Bacterial Polysomes”. In: <i>Cell</i> 136.2 (2009), pp. 261 –271. issn: 0092-8674. <a href="http://dx.doi.org/10.1016/j.cell.2008.11.016">doi: 10.1016/j.cell.2008.11.016</a>.
+
         <b id="Citation_Brandt2009">[2]</b>Florian Brandt et al. “The Native 3D Organization of Bacterial Polysomes”. In: <i>Cell</i> 136.2 (2009), pp. 261 –271. issn: 0092-8674. doi: <a href="http://dx.doi.org/10.1016/j.cell.2008.11.016">10.1016/j.cell.2008.11.016</a>.
       </td>
       </td>
     </tr>
     </tr>
Line 45: Line 45:
     <tr>
     <tr>
       <td>
       <td>
-
         <b id="Citation_Roberts2006">[9]</b>C. Roberts et al. “Characterizing the effect of the Staphylococcus aureus virulence factor regulator, SarA, on log-phase mRNA half-lives”. In: <i>J. Bacteriol.</i> 188.7 (Apr. 2006), pp. 2593–2603. <a href="http://dx.doi.org/10.1128/JB.188.7.2593-2603.2006">doi: 10.1128/JB.188.7.2593-2603.2006</a>
+
         <b id="Citation_Roberts2006">[9]</b>C. Roberts et al. “Characterizing the effect of the Staphylococcus aureus virulence factor regulator, SarA, on log-phase mRNA half-lives”. In: <i>J. Bacteriol.</i> 188.7 (Apr. 2006), pp. 2593–2603. doi: <a href="http://dx.doi.org/10.1128/JB.188.7.2593-2603.2006">10.1128/JB.188.7.2593-2603.2006</a>
       </td>
       </td>
     </tr>
     </tr>
     <tr>
     <tr>
       <td>
       <td>
-
         <b id="Citation_Siwiak2013">[10]</b>Marlena Siwiak and Piotr Zielenkiewicz. “Transimulation - Protein Biosynthesis Web Service”. In: <i>PLoS ONE 8.9</i> (Sept. 2013), e73943. <a href="http://dx.doi.org/10.1371/journal.pone.0073943">doi: 10.1371/journal.pone.0073943.</a>
+
         <b id="Citation_Siwiak2013">[10]</b>Marlena Siwiak and Piotr Zielenkiewicz. “Transimulation - Protein Biosynthesis Web Service”. In: <i>PLoS ONE 8.9</i> (Sept. 2013), e73943. doi: <a href="http://dx.doi.org/10.1371/journal.pone.0073943">10.1371/journal.pone.0073943.</a>
 +
      </td>
 +
    </tr>
 +
    <tr>
 +
      <td>
 +
        <b id="Citation_Sternberg2014">[11]</b>S.H. Sternberg et al. “DNA interrogation by the CRISPR RNA-guided endonuclease Cas9”. In: <i>Nature</i> 7490 (2014), 6267. doi: <a href="http://dx.doi.org/10.1038/nature13011">10.1038/nature13011</a>. url: <a href="http://www.nature.com/nature/journal/v507/n7490/full/nature13011.html">http://www.nature.com/nature/journal/v507/n7490/full/nature13011.html</a>.
 +
      </td>
 +
    </tr>
 +
    <tr>
 +
      <td>
 +
        <b id="Citation_Freiburg2013">[12]</b>Freiburg iGEM Team. <i>dCas9</i>. BBa K1150000 Standard Biological Part. 2013. url: <a href="http://parts.igem.org/Part:BBa_K1150000">http://parts.igem.org/Part:BBa_K1150000</a>.
 +
      </td>
 +
    </tr>
 +
    <tr>
 +
      <td>
 +
        <b id="Citation_UCSF2013">[13]</b>UCSF iGEM Team. <i>Operation CRISPR: Decision Making Circuit Model</i>. 2013. url: <a href="https://2013.igem.org/Team:UCSF/Modeling">https://2013.igem.org/Team:UCSF/Modeling</a>.
 +
      </td>
 +
    </tr>
 +
    <tr>
 +
      <td>
 +
        <b id="Citation_Wu2005">[14]</b>Jian-Qiu Wu and Thomas D. Pollard. “Counting Cytokinesis Proteins Globally and Locally in Fission Yeast”. In: <i>Science</i> 310.5746 (2005), pp. 310–314. doi: <a href="http://dx.doi.org/10.1126/science.1113230">10.1126/science.1113230</a>.
       </td>
       </td>
     </tr>
     </tr>

Revision as of 00:06, 9 October 2014

[1]D. Bikard et al. “Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system”. In: Nucleic Acids Res. 41.15 (Aug. 2013), pp. 7429–7437.
[2]Florian Brandt et al. “The Native 3D Organization of Bacterial Polysomes”. In: Cell 136.2 (2009), pp. 261 –271. issn: 0092-8674. doi: 10.1016/j.cell.2008.11.016.
[3]A. G. Cheng, D. Missiakas, and O. Schneewind. “The giant protein Ebh is a determinant of Staphylococcus aureus cell size and complement resistance”. In: J. Bacteriol. 196.5 (2014), pp. 971–981.
[4]A. L. Cheung, K. Nishina, and A. C. Manna. “SarA of Staphylococcus aureus binds to the sarA promoter to regulate gene expression”. In: J. Bacteriol. 190.6 (Mar. 2008), pp. 2239–2243.
[5]G. Domingue, J. W. Costerton, and M. R. Brown. “Bacterial doubling time modulates the effects of opsonisation and available iron upon interactions between Staphylococcus aureus and human neutrophils”. In: FEMS Immunol. Med. Microbiol. 16.3-4 (Dec. 1996), pp. 223–228.
[6]S. Michalik et al. “Life and death of proteins: a case study of glucose-starved Staphylococcus aureus”. In: Mol. Cell Proteomics 11.9 (Sept. 2012), pp. 558–570.
[7]R. Milo et al. “BioNumbers-the database of key numbers in molecular and cell biology”. In: Nucleic Acids Res. 30 (Jan. 2010), pp. D750–D753. url: http://bionumbers.hms.harvard.edu/bionumber.aspx?id=107869}.
[8]L. S. Qi et al. “Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression”. In: Cell 152.5 (Feb. 2013), pp. 1173–1183.
[9]C. Roberts et al. “Characterizing the effect of the Staphylococcus aureus virulence factor regulator, SarA, on log-phase mRNA half-lives”. In: J. Bacteriol. 188.7 (Apr. 2006), pp. 2593–2603. doi: 10.1128/JB.188.7.2593-2603.2006
[10]Marlena Siwiak and Piotr Zielenkiewicz. “Transimulation - Protein Biosynthesis Web Service”. In: PLoS ONE 8.9 (Sept. 2013), e73943. doi: 10.1371/journal.pone.0073943.
[11]S.H. Sternberg et al. “DNA interrogation by the CRISPR RNA-guided endonuclease Cas9”. In: Nature 7490 (2014), 6267. doi: 10.1038/nature13011. url: http://www.nature.com/nature/journal/v507/n7490/full/nature13011.html.
[12]Freiburg iGEM Team. dCas9. BBa K1150000 Standard Biological Part. 2013. url: http://parts.igem.org/Part:BBa_K1150000.
[13]UCSF iGEM Team. Operation CRISPR: Decision Making Circuit Model. 2013. url: https://2013.igem.org/Team:UCSF/Modeling.
[14]Jian-Qiu Wu and Thomas D. Pollard. “Counting Cytokinesis Proteins Globally and Locally in Fission Yeast”. In: Science 310.5746 (2005), pp. 310–314. doi: 10.1126/science.1113230.