Team:XMU-China/Safety

From 2014.igem.org

(Difference between revisions)
Line 183: Line 183:
#navbar_frame_right{right:-120px;top:4px;}
#navbar_frame_right{right:-120px;top:4px;}
/*Background*/
/*Background*/
-
.Project_title{position:absolute;width:300px;}
+
.Safety_title{position:absolute;width:300px;}
-
#Project_background{position:relative;top:230px;width:1000px;margin-left:-400px;left:43%;}
+
#Safety{position:relative;top:230px;width:1000px;margin-left:-400px;left:43%;}
-
#Project_background_wd{
+
#Safety_wd{
background:rgba(0, 0, 0, 0.7) none repeat scroll 0 0 !important;/*FF*/
background:rgba(0, 0, 0, 0.7) none repeat scroll 0 0 !important;/*FF*/
filter:Alpha(opacity=40); background:#000000;/*IE*/
filter:Alpha(opacity=40); background:#000000;/*IE*/
Line 371: Line 371:
</div>
</div>
</div>
</div>
-
<!--Background-->
+
<!--Safety-->
-
<div id="Project_background">
+
<div id="Safety">
-
<img id="Project_background_title" class="Project_title" src="https://static.igem.org/mediawiki/2014/0/0f/Xmu_project_background_zwei.png"/>
+
<img id="Safety_title" class="Safety_title" src="https://static.igem.org/mediawiki/2014/0/0f/Xmu_project_background_zwei.png"/>
-
<div id="Project_background_wd">
+
<div id="Safety_wd">
-
<p style="line-height: 150%; font-size: 26px;">
+
<p style="text-align: center; font-size: 21px;">
 +
    <span style="font-size: 21px;">Safety</span>
 +
</p>
 +
<p style="font-size: 16px;">
 +
    <span style="font-size: 16px;">General</span><span style="font-size: 16px;"> Laboratory Safety</span>
 +
</p>
 +
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
 +
    <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">What </span><span style="font-size: 16px;">measures </span><span style="font-size: 16px;">does school take</span><span style="font-size: 16px;"> to guarantee the safety </span><span style="font-size: 16px;">in</span><span style="font-size: 16px;"> laboratories?</span>
 +
</p>
 +
<p style="font-size: 16px;">
     &nbsp;
     &nbsp;
</p>
</p>
-
<p style="text-align: justify; font-size: 1em;">
+
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
-
     Bacterial chemotaxis, which is universal in </span><span style="font-style: italic;">E.coli</span>, is defined as bacteria cells migration in response to a chemical stimulus. The natural </span><span style="font-style: italic;">E.coli</span> chemotaxis has limited receptor proteins which can respond to only six kinds of amino acid. Nevertheless, the reprogrammed chemotaxis named pseudotaxis makes </span><span style="font-style: italic;">E.coli</span> able to respond to molecules, whose receptor proteins do not exist in classical </span><span style="font-style: italic;">E.coli</span>, such as IPTG and L-arabinose, etc.
+
     <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">School </span><span style="font-size: 16px;">has its own biosafety rules that are regulated by the Ministry of Environment Protection, P.R. China and our institution.</span><span style="font-size: 16px;"> And each</span><span style="font-size: 16px;"> </span><span style="font-size: 16px;">laboratory safety standards</span><span style="font-size: 16px;"> </span><span style="font-size: 16px;">are implemented strictly.</span>
 +
</p>
 +
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
 +
    <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">School requires each student to participate in the chemical experimental courses of safety and environmental protection. In the courses, teachers introduce students the matters needing attention and strategies&nbsp;in&nbsp;dealing&nbsp;with the unexpected incidents&nbsp;through various case. Eventually each have to take the course exam, </span><span style="font-size: 16px;">only to meet the requirements of students before they can enter the lab and experimentize.</span>
 +
</p>
 +
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
 +
    <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">Each laboratory is</span><span style="font-size: 16px;"> equipped with safety experimental equipment</span><span style="font-size: 16px;">s</span><span style="font-size: 16px;"> and relevant person in charge</span><span style="font-size: 16px;">.</span>
</p>
</p>
-
<p style="text-align: justify; font-size: 1em;">
+
<p style="text-align: justify; text-indent: 32px; font-size: 16px; styleName: Normal;">
     &nbsp;
     &nbsp;
</p>
</p>
-
<p style="text-align: justify; font-size: 1em;">
+
<p style="text-align: justify; text-indent: 32px; font-size: 16px; styleName: Normal;">
-
     <span style="font-style: italic;">E.coli</span> have several flagella per cell (4–10 typically), which can rotate in two ways </span><span style="valign: sup;">[1]: counterclockwise (CCW) and clockwise (CW)</span><span style="valign: sup;"> [</span><span style="valign: sup;">2</span><span style="valign: sup;">]. The former aligns the flagella into a single rotating bundle, causing the bacterium to swim in line, while the later breaks the flagella bundle apart such that each flagellum points in a different direction, causing the bacterium to tumble. The motility is determined by the phosphorylation state of CheY protein governed by CheZ</span> protein. In the presence of CheZ</span> protein, CheY-P is dephosphorylated and produce CheY, thus CheY lead the flagellar motor to rotate CCW resulting in swimming. In the absence of CheZ</span>, CheY is phosphorylated into CheY-P which can bind to the flagellar switch protein FliM resulting in tumbling (</span><span style="font-weight: 700;">Figure 1). </span><span style="valign: sup;">[</span><span style="valign: sup;">2</span><span style="valign: sup;">] </span>
+
     &nbsp;
 +
</p>
 +
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
 +
    <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">W</span><span style="font-size: 16px;">hat special measures</span><span style="font-size: 16px;"> do you take to</span><span style="font-size: 16px;"> </span><span style="font-size: 16px;">guarantee</span><span style="font-size: 16px;"> </span><span style="font-size: 16px;">the safety of </span><span style="font-size: 16px;">experiment</span><span style="font-size: 16px;">ers i</span><span style="font-size: 16px;">n view of the </span><span style="font-size: 16px;">experiments related to iGEM</span><span style="font-size: 16px;">?</span>
</p>
</p>
-
<p style="text-align: justify; font-size: 1em;">
+
<p style="font-size: 16px;">
     &nbsp;
     &nbsp;
</p>
</p>
-
<table style="border: currentColor; border-image: none; margin-right: auto; margin-left: auto; border-collapse: collapse; styleName: Normal Table; border-insideH: 1px none #000000; border-insideV: 1px none #000000; cellpadding: 0px 7px 0px 7px;">
+
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
-
    <tbody>
+
    <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">Every member of the team</span><span style="font-size: 16px;"> </span><span style="font-size: 16px;">has to take the experimental test</span><span style="font-size: 16px;">, </span><span style="font-size: 16px;">which </span><span style="font-size: 16px;">iGEM tutors and postgraduate </span><span style="font-size: 16px;">assigned the</span><span style="font-size: 16px;"> topic. </span><span style="font-size: 16px;">Only the one who pass the exam </span><span style="font-size: 16px;">will be a</span><span style="font-size: 16px;">llowed to enter the laboratory and start</span><span style="font-size: 16px;"> experiment</span><span style="font-size: 16px;">s. And </span><span style="font-size: 16px;">there will be a graduate student </span><span style="font-size: 16px;">give </span><span style="font-size: 16px;">us</span><span style="font-size: 16px;"> a demonstration</span><span style="font-size: 16px;"> and help new players</span><span style="font-size: 16px;"> to correct the mistakes in </span><span style="font-size: 16px;">the experiment.</span>
-
        <tr class="firstRow">
+
</p>
-
            <td style="padding: 0px 7px; border: 1px rgb(0, 0, 0); width: 434px; vertical-align: top;">
+
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
-
                <p style="text-align: justify; font-size: 1em;">
+
    <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">E</span><span style="font-size: 16px;">ach </span><span style="font-size: 16px;">member</span><span style="font-size: 16px;"> shall formulate detailed experimental plan before the experiment, and </span><span style="font-size: 16px;">get </span><span style="font-size: 16px;">familiar with the experimental process, master the characteristics of reagent</span><span style="font-size: 16px;">s</span><span style="font-size: 16px;"> before the experiment. During the experiment, all the players need </span><span style="font-size: 16px;">take</span><span style="font-size: 16px;"> fully protective measures, including </span><span style="font-size: 16px;">wearing </span><span style="font-size: 16px;">experimental suits, goggles, gloves and masks.</span>
-
                    <img width="406" height="327" src="https://static.igem.org/mediawiki/2014/6/6b/Xmu_Project_background_Figure_1.png"/>
+
</p>
-
                </p>
+
<p style="font-size: 16px;">
-
            </td>
+
-
        </tr>
+
-
        <tr>
+
-
            <td style="border-width: medium 1px 1px; border-color: currentColor rgb(0, 0, 0) rgb(0, 0, 0); padding: 0px 7px; width: 434px; vertical-align: top;">
+
-
                <p style="text-align: justify; font-family: Times New Roman; font-size: 1em; styleName: Normal;">
+
-
                    <span ><b>Figure 1</b>. </span><span>Chemotaxis mechanism of</span><span style="font-style: italic;"> E.coli</span>. </span><span>The direction of rotation of the flagellar motor is controlled by the protein CheY. If the CheY is phosphorylated (CheY-P), it can bind to the flagellar motor protein FliM, c</span><span>ausing the cell to tumble. When</span><span> CheY is not phosphorylated, the flagellar motor</span><span> rotates counterclockwise (CCW). </span><span style="valign: sup;">[1]</span>
+
-
                </p>
+
-
            </td>
+
-
        </tr>
+
-
        <tr style="height: 0px;">
+
-
            <td style="border: currentColor; border-image: none; width: 434px;"></td>
+
-
        </tr>
+
-
    </tbody>
+
-
</table>
+
-
<p style="text-align: justify; font-size: 1em;">
+
     &nbsp;
     &nbsp;
</p>
</p>
-
<p style="text-align: justify; font-size: 1em;">
+
<p style="font-size: 16px;">
-
     <span >Therefore, if no CheZ</span> is expressed (such as </span><span style="font-style: italic;">E.coli</span> CL-1 with </span><span style="font-style: italic;">CheZ</span> gene knocked out of genome), CheY-P couldn’t be dephosphorylated so that flagella keep CW, thus </span><span style="font-style: italic;">E.coli</span> keep tumbling and perform non-motile ability on semi-solid culture medium (</span><span style="font-weight: 700;">Figure 2</span> left). With enough <span style="font-style: italic;">CheZ</span> expressed, <span style="font-style: italic;">E.coli</span> regain chemotaxis ability on semi-solid culture medium (<span style="font-weight: 700;">Figure 2</span> right). If one kind of molecule (such as IPTG) could stimulate circuit to express<span style="font-style: italic;"> CheZ</span>, reprogrammed </span><span style="font-style: italic;">E.coli</span> will have the tendency to migrate to it. We named the reprogrammed chemotaxis pseudotaxis. Therefore, we are able to reprogram bacterial chemotaxis by knocking </span><span style="font-style: italic;">CheZ</span> gene out of the wild-type genome to control the expression of </span><span style="font-style: italic;">CheZ</span> by logic gene circuit.</span>
+
     <span style="font-size: 16px;">Project</span><span style="font-size: 16px;"> Safety</span>
 +
</p>
 +
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
 +
    <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">Whether you use the </span><span style="font-size: 16px;">reagent</span><span style="font-size: 16px;">s with potential </span><span style="font-size: 16px;">hazard</span><span style="font-size: 16px;">?</span>
</p>
</p>
-
<p style="text-align: justify; font-size: 1em;">
+
<p style="font-size: 16px;">
     &nbsp;
     &nbsp;
</p>
</p>
-
<table style="border: currentColor; border-image: none; width: 586px; margin-right: auto; margin-left: auto; border-collapse: collapse; styleName: Normal Table; border-insideH: 1px none #000000; border-insideV: 1px none #000000; cellpadding: 0px 7px 0px 7px;">
+
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
-
     <tbody>
+
     <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">Strain</span><span style="font-size: 16px;">s</span><span style="font-size: 16px;"> used in the experiments are </span><span style="font-size: 16px; font-style: italic;">Eco.li</span><span style="font-size: 16px;"> </span><span style="font-size: 16px;">(</span><span style="font-size: 16px;">k)</span><span style="font-size: 16px;"> </span><span style="font-size: 16px;">which is</span><span style="font-size: 16px;"> non-pathogenic bacteria</span><span style="font-size: 16px;">.</span>
-
        <tr class="firstRow">
+
</p>
-
            <td style="padding: 0px 7px; border: 1px rgb(0, 0, 0); width: 397px; vertical-align: top;">
+
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
-
                <p style="text-align: justify; font-size: 1em; styleName: Normal;">
+
    <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">This year we improve the n</span><span style="font-size: 16px;">ucleic acid gel stain</span><span style="font-size: 16px;"> in the experiment, replacing the EB (e</span><span style="font-size: 16px;">thidium bromide</span><span style="font-size: 16px;">) with </span><span style="font-size: 16px;">SYBR Green I</span><span style="font-size: 16px;">. Although </span><span style="font-size: 16px;">SYBR Green I</span><span style="font-size: 16px;"> has potential </span><span style="font-size: 16px;">hazard</span><span style="font-size: 16px;">, the c</span><span style="font-size: 16px;">arcinogenicity </span><span style="font-size: 16px;">is </span><span style="font-size: 16px;">less than </span><span style="font-size: 16px;">EB.</span>
-
                    <img width="381" height="370" src="https://static.igem.org/mediawiki/2014/5/5e/Xmu_Project_Background_figure02-1.png"/>
+
</p>
-
                </p>
+
<p style="font-size: 16px;">
-
            </td>
+
-
            <td style="border-width: 1px 1px 1px medium; border-color: rgb(0, 0, 0) rgb(0, 0, 0) rgb(0, 0, 0) currentColor; padding: 0px 7px; width: 189px; vertical-align: top;">
+
-
                <p style="text-align: left; padding-bottom: 1px; font-size: 24px; border-bottom-color: rgb(170, 170, 170); border-bottom-width: 1px; border-bottom-style: solid; outlineLvl: 0;">
+
-
                    &nbsp;
+
-
                </p>
+
-
                <p style="text-align: left; padding-bottom: 1px; font-size: 16px; border-bottom-color: rgb(170, 170, 170); border-bottom-width: 1px; border-bottom-style: solid; outlineLvl: 0;">
+
-
                    <span style="color: #fff; font-size: 16px;">BBa_K1412000</span>
+
-
                </p>
+
-
                <p style="text-align: justify; font-size: 1em; styleName: Normal;">
+
-
                    <img width="190" height="55" src="https://static.igem.org/mediawiki/2014/f/f2/Xmu_Project_Background_figure02-2.png"/>
+
-
                </p>
+
-
                <p style="text-align: justify; font-size: 1em; styleName: Normal;">
+
-
                    &nbsp;
+
-
                </p>
+
-
                <h1 style="text-align: justify; padding-top: 0.5em; padding-bottom: 0.5em; font-size: 1em; border-bottom-color: rgb(170, 170, 170); border-bottom-width: 1px; border-bottom-style: solid; styleName: Normal; outlineLvl: 0;">
+
-
                    <span style="color:#fff; font-size: 16px; font-weight: 400;">BBa_J04450</span>
+
-
                </h1>
+
-
                <p style="text-align: justify; font-size: 1em; styleName: Normal;">
+
-
                    <img width="153" height="53" src="https://static.igem.org/mediawiki/2014/c/c2/Xmu_Project_Background_figure02-3.png"/>
+
-
                </p>
+
-
            </td>
+
-
        </tr>
+
-
        <tr>
+
-
            <td style="border-width: medium 1px 1px; border-color: currentColor rgb(0, 0, 0) rgb(0, 0, 0); padding: 0px 7px; width: 586px; vertical-align: top;" colspan="2">
+
-
                <p style="text-align: justify; font-size: 1em; styleName: Normal;font-family:Times New Roman;">
+
-
                    <span style="font-weight: 700;">Figure 2</span><span style="font-weight: 700;">.</span><span style="font-weight: 700;"> </span><span style="font-style: italic;">CL-1</span>&nbsp;could express&nbsp;<span style="font-style: italic;">CheZ</span>&nbsp;with&nbsp;BBa_K1412000&nbsp;to regain chemotaxis ability (the right colony). While with&nbsp;BBa_J04450 (the left colony)&nbsp;for comparison, no chemotaxis ability could be observed.&nbsp;</span>
+
-
                </p>
+
-
            </td>
+
-
        </tr>
+
-
        <tr style="height: 0px;">
+
-
            <td style="border: currentColor; border-image: none; width: 397px;"></td>
+
-
            <td style="border: currentColor; border-image: none; width: 189px;"></td>
+
-
        </tr>
+
-
    </tbody>
+
-
</table>
+
-
<p style="text-align: justify; font-size: 1em; styleName: Normal;">
+
     &nbsp;
     &nbsp;
</p>
</p>
-
<p style="text-align: justify; font-size: 1em; styleName: Normal;">
+
<p style="font-size: 16px;">
-
     <span >Besides, as aptamers have the potential to respond to almost all kinds of molecules and have already been used to regulate gene expression such as </span><span style="font-style: italic;">CheZ</span> to reprogram chemotaxis (<span style="font-weight: 700;">Figure 3</span>). We are also developing a new mechanism which combines aptamers with RNA-lock system to regulate target gene.
+
     &nbsp;
</p>
</p>
-
<p style="font-size: 18px;">
+
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
 +
    <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">Did </span><span style="font-size: 16px;">the experiments</span><span style="font-size: 16px;"> pollute the environment?</span>
 +
</p>
 +
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
 +
    <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">To avoid this potential biological pollution to environment, we gathered all culture fluid and culture medium with bacteria and we processed them together to ensure </span><span style="font-size: 16px;">that none of them leaked from our laboratory through sewer and dustbin. </span>
 +
</p>
 +
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
 +
    <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">We handled all the biological materials, wastes and equipment strictly following the BSL-1 requirements. All these things that have physically contacted with biological samples were bleached by autoclave before being discarded or reused.</span>
 +
</p>
 +
<p style="text-align: justify; text-indent: 0em; font-size: 16px; margin-left: 24px; styleName: Normal;">
     &nbsp;
     &nbsp;
</p>
</p>
-
<table style="border: currentColor; border-image: none; width: 589px; margin-right: auto; margin-left: auto; border-collapse: collapse; styleName: Normal Table; border-insideH: 1px none #000000; border-insideV: 1px none #000000; cellpadding: 0px 7px 0px 7px;">
+
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
-
     <tbody>
+
     <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">What measures do you take to </span><span style="font-size: 16px;">guarantee</span><span style="font-size: 16px;"> the strains </span><span style="font-size: 16px;">won’t leak in the project</span><span style="font-size: 16px;">?</span>
-
        <tr class="firstRow">
+
</p>
-
            <td style="padding: 0px 7px; border: 1px rgb(0, 0, 0); width: 589px; vertical-align: top;">
+
<p style="font-size: 16px;">
-
                <p style="font-size: 18px;">
+
-
                    <img width="575" height="188" src="https://static.igem.org/mediawiki/2014/e/e9/Xmu_Project_Background_figure03.png"/>
+
-
                </p>
+
-
            </td>
+
-
        </tr>
+
-
        <tr>
+
-
            <td style="border-width: medium 1px 1px; border-color: currentColor rgb(0, 0, 0) rgb(0, 0, 0); padding: 0px 7px; width: 589px; vertical-align: top;">
+
-
                <p style="text-align: justify; font-family: Times New Roman; font-size: 1em; styleName: Normal;">
+
-
                    <span><b>Figure 3</b>. </span><span>Me</span><span>chanism of how aptamers control</span><span> the translation of CheZ</span> protein. In the absence of target molecules (theophylline as an example). The mRNA’s ribosome binding site is paired, which inhibits the translation of CheZ</span> protein. In the absence of CheZ</span>, CheY-P will remain phosphorylated and the cells tumble in place. While in the presence of theophylline, the mRNA’s ribosome binding site will expose and the CheZ</span> can be expressed, allowing the cells to run and tumble. </span><span style="valign: sup;">[1]</span>
+
-
                </p>
+
-
            </td>
+
-
        </tr>
+
-
        <tr style="height: 0px;">
+
-
            <td style="border: currentColor; border-image: none; width: 589px;"></td>
+
-
        </tr>
+
-
    </tbody>
+
-
</table>
+
-
<table style="border: currentColor; border-image: none; width: 589px; margin-right: auto; margin-left: auto; border-collapse: collapse; styleName: Normal Table; border-insideH: 1px none #000000; border-insideV: 1px none #000000; cellpadding: 0px 7px 0px 7px;">
+
-
    <tbody>
+
-
        <tr class="firstRow">
+
-
            <td style="padding: 0px 7px; border: 1px rgb(0, 0, 0); width: 589px; vertical-align: top;"></td>
+
-
        </tr>
+
-
        <tr style="height: 0px;">
+
-
            <td style="border: currentColor; border-image: none; width: 589px;"></td>
+
-
        </tr>
+
-
    </tbody>
+
-
</table>
+
-
<p style="font-size: 18px;">
+
     &nbsp;
     &nbsp;
</p>
</p>
-
<p style="text-align: justify; font-size: 1em;">
+
<p style="text-align: justify; text-indent: -24px; font-size: 16px; margin-left: 24px; styleName: Normal;">
-
     <span >Characterizing the circuit we constructed, we combine mathematical modeling with experiments, using modeling to guide experiments and to explain experimental phenomena. We have got reasonable results for a broader range of applications. As we have proved that the chemotaxis of </span><span style="font-style: italic;">E.coli</span> could be well reprogrammed, we try to apply reprogrammed chemotaxis into practice. For example, we have already demonstrated that motile ability is positively associate with the expression strength of </span><span style="font-style: italic;">CheZ</span>, thus we can characterize the efficiency of RBS or promoter by migration distance. At the same time, we also develop a biosafety system which relies on reprogrammed chemotaxis.</span>
+
     <span style="font-family: Calibri;">-</span><span style="font-family: Calibri;"> </span><span style="font-size: 16px;">We designed a </span><span style="font-size: 16px;">black hole system</span><span style="font-size: 16px;"> which can kill the</span><span style="font-size: 16px;"> bacteria</span><span style="font-size: 16px;"> with </span><span style="font-size: 16px;">hyperosmotic pressure</span><span style="font-size: 16px;">. In the gene circuit, the higher </span><span style="font-size: 16px;">osmolality</span><span style="font-size: 16px;"> </span><span style="font-size: 16px;">result</span><span style="font-size: 16px;">s</span><span style="font-size: 16px;"> in stronger expression strength of Pomp</span><span style="font-size: 16px;">. Then t</span><span style="font-size: 16px;">he moving tendency of reprogrammed CL-1 will orient to the hyperosmotic pressure spot.</span><span style="font-size: 14px;"> </span><span style="font-size: 16px;">When the bacteria move into where the osmotic pressur</span><span style="font-size: 16px;">e reaches to the critical value, </span><span style="font-size: 16px;">the bacteria </span><span style="font-size: 16px;">will </span><span style="font-size: 16px;">be killed finally.</span><span style="font-size: 16px;"> </span><span style="font-size: 16px;">The sources to create hyperosmotic pressure are cheap, accessible, environmentally friendly.</span>
</p>
</p>
-
<p style="font-size: 18px;">
+
<p style="text-align: justify; text-indent: 0em; font-size: 16px; margin-left: 24px; styleName: Normal;">
     &nbsp;
     &nbsp;
</p>
</p>
-
<p style="text-align: justify; font-size: 1em;">
+
<p style="text-align: justify; text-indent: 0em; font-size: 16px; margin-left: 24px; styleName: Normal;">
-
     <span >Last but not the least, we apply mathematical principles in our project. Mathematics is the simplest and clearest language, whose value to the development of human civilization is now widely recognized because of its extensive application of science, society and daily life. However, the mathematical laws in life sciences is still unclear and even in chaos. Luckily, synthetic biology can overcome these shortcomings on some level. Based on this, we design a gene circuit and expect mathematical regularities to realize the regulation and control of life activities. We hope our work can inspire people&#39;s interests to combine mathematics with synthetic biology.</span>
+
     &nbsp;
</p>
</p>
-
<p style="font-size: 18px;">
+
<p style="font-size: 16px;">
 +
    <span style="font-size: 16px;">SUPPLEMENTARY</span>
 +
</p>
 +
<p style="font-size: 16px;">
 +
    <span style="font-size: 16px;">When a freshman or freshwoman comes to our College of Chemisty and Chemical E</span><span style="font-size: 16px;">ngineering in Xiamen University</span><span style="font-size: 16px;">,</span><span style="font-size: 16px;"> </span><span style="font-size: 16px;">in the first day, there i</span><span style="font-size: 16px;">s a story about &quot;C3H3&quot; for them</span><span style="font-size: 16px;">,</span><span style="font-size: 16px;"> </span><span style="font-size: 16px;">which was advocated by Prof. Jiaxi Lu, a famous Chinese quantum chemist. &quot;C3H3&quot; consists of three words, Clear Head, Clever Hand and Clean Habit. We think it is very useful when we do synthetic biological experiments, let alone talking about safety in genetic engineering.</span>
 +
</p>
 +
<p style="font-size: 16px;">
     &nbsp;
     &nbsp;
</p>
</p>
-
<p style="font-size: 18px;">
+
<p style="font-size: 16px;">
-
     <span style="font-size: 18px; font-weight: 700;">R</span><span style="font-size: 18px; font-weight: 700;">eference</span><span style="font-size: 18px; font-weight: 700;">s</span>
+
     <span style="font-size: 16px;">Firstly, before doing a genetic engineering experiment, you should keep your head clear. Concretely speaking, you need to find out the safety level of biological materials used in your experiment, including microorganisms, reagents and your constructed gene circuits. Keep every tiny experimental detail in your mind. This can help you avoid many potential safety hazards in your experiment.</span>
</p>
</p>
-
<p style="font-size: 18px;">
+
<p style="font-size: 16px;">
-
     <span >1. </span><span style="color: rgb(0, 0, 255); text-decoration: underline; styleName: Default Paragraph Font;">http://en.wikipedia.org/wiki/Chemotaxis</span>
+
     &nbsp;
</p>
</p>
-
<p style="text-align: justify; font-size: 1em;">
+
<p style="font-size: 16px;">
-
     <span >2. Topp S, Gallivan J P. Guiding bacteria with small molecules and RNA[J]. Journal of the American Chemical Society, 2007, 129(21): 6807-6811.</span>
+
     <span style="font-size: 16px;">In addition, to make your hands clever means to perform a experiment skillfully. For example, when making a gel for SDS-PAGE, it is necessary to use acrylamide, which has strong carcinogenicity. So you have to pay much attention when mixing it and pouring the mixture into a mold to agglomerate.</span>
</p>
</p>
-
<p style="text-align: justify; font-size: 1em;">
+
<p style="font-size: 16px;">
-
     <span style="color: rgb(0, 0, 255); text-decoration: underline; styleName: Default Paragraph Font;">http://pubs.acs.org/doi/abs/10.1021/ja0692480</span>
+
     &nbsp;
</p>
</p>
-
<p style="text-align: justify; font-size: 1em;">
+
<p style="font-size: 16px;">
 +
    <span style="font-size: 16px;">The last but not the least important, a clean habit is totally useful not only in your lab but also in your life. Imaging a mass, dirty and disorder lab, maybe some tattered gloves or broken flasks which have been contacted with highly toxic reagents are hidden below the experiment rig. Many risks would arise if there&#39;s unclean experimental habit. A clean habit is more than a combination of clear head and clever hand. It&#39;s a kind of decorous attitude to your experiments and a neat working atmosphere you create by yourself. A clean and good habit can improve your whole life.</span>
 +
</p>
 +
<p style="font-size: 16px;">
     &nbsp;
     &nbsp;
</p>
</p>
-
<p style="text-align: justify; font-size: 1em;">
+
<p style="font-size: 16px;">
 +
    <span style="font-size: 16px;">So this is our &quot;C3H3&quot;. We sincerely hope this proposal can improve safety in synthetic </span><span style="font-size: 16px;">biology and genetic engineering.</span>
 +
</p>
 +
<p style="font-size: 16px;">
 +
    &nbsp;
 +
</p>
 +
<p style="font-size: 16px;">
 +
    <span style="font-size: 16px;">Furthermore, we have another reasonable suggestion that every iGEM team should make a data table or survey results about public biosafety or laboratory safety and security of the projects. Every team can submit a survey report attached with questionnaire and analyzing data to the iGEM safety committee. More details are to be discussed.</span>
 +
</p>
 +
<p style="font-size: 16px;">
     &nbsp;
     &nbsp;
</p>
</p>

Revision as of 17:25, 15 October 2014

side_bar

Safety

General Laboratory Safety

- What measures does school take to guarantee the safety in laboratories?

 

- School has its own biosafety rules that are regulated by the Ministry of Environment Protection, P.R. China and our institution. And each laboratory safety standards are implemented strictly.

- School requires each student to participate in the chemical experimental courses of safety and environmental protection. In the courses, teachers introduce students the matters needing attention and strategies in dealing with the unexpected incidents through various case. Eventually each have to take the course exam, only to meet the requirements of students before they can enter the lab and experimentize.

- Each laboratory is equipped with safety experimental equipments and relevant person in charge.

 

 

- What special measures do you take to guarantee the safety of experimenters in view of the experiments related to iGEM?

 

- Every member of the team has to take the experimental test, which iGEM tutors and postgraduate assigned the topic. Only the one who pass the exam will be allowed to enter the laboratory and start experiments. And there will be a graduate student give us a demonstration and help new players to correct the mistakes in the experiment.

- Each member shall formulate detailed experimental plan before the experiment, and get familiar with the experimental process, master the characteristics of reagents before the experiment. During the experiment, all the players need take fully protective measures, including wearing experimental suits, goggles, gloves and masks.

 

Project Safety

- Whether you use the reagents with potential hazard?

 

- Strains used in the experiments are Eco.li (k) which is non-pathogenic bacteria.

- This year we improve the nucleic acid gel stain in the experiment, replacing the EB (ethidium bromide) with SYBR Green I. Although SYBR Green I has potential hazard, the carcinogenicity is less than EB.

 

 

- Did the experiments pollute the environment?

- To avoid this potential biological pollution to environment, we gathered all culture fluid and culture medium with bacteria and we processed them together to ensure that none of them leaked from our laboratory through sewer and dustbin.

- We handled all the biological materials, wastes and equipment strictly following the BSL-1 requirements. All these things that have physically contacted with biological samples were bleached by autoclave before being discarded or reused.

 

- What measures do you take to guarantee the strains won’t leak in the project?

 

- We designed a black hole system which can kill the bacteria with hyperosmotic pressure. In the gene circuit, the higher osmolality results in stronger expression strength of Pomp. Then the moving tendency of reprogrammed CL-1 will orient to the hyperosmotic pressure spot. When the bacteria move into where the osmotic pressure reaches to the critical value, the bacteria will be killed finally. The sources to create hyperosmotic pressure are cheap, accessible, environmentally friendly.

 

 

SUPPLEMENTARY

When a freshman or freshwoman comes to our College of Chemisty and Chemical Engineering in Xiamen University, in the first day, there is a story about "C3H3" for them, which was advocated by Prof. Jiaxi Lu, a famous Chinese quantum chemist. "C3H3" consists of three words, Clear Head, Clever Hand and Clean Habit. We think it is very useful when we do synthetic biological experiments, let alone talking about safety in genetic engineering.

 

Firstly, before doing a genetic engineering experiment, you should keep your head clear. Concretely speaking, you need to find out the safety level of biological materials used in your experiment, including microorganisms, reagents and your constructed gene circuits. Keep every tiny experimental detail in your mind. This can help you avoid many potential safety hazards in your experiment.

 

In addition, to make your hands clever means to perform a experiment skillfully. For example, when making a gel for SDS-PAGE, it is necessary to use acrylamide, which has strong carcinogenicity. So you have to pay much attention when mixing it and pouring the mixture into a mold to agglomerate.

 

The last but not the least important, a clean habit is totally useful not only in your lab but also in your life. Imaging a mass, dirty and disorder lab, maybe some tattered gloves or broken flasks which have been contacted with highly toxic reagents are hidden below the experiment rig. Many risks would arise if there's unclean experimental habit. A clean habit is more than a combination of clear head and clever hand. It's a kind of decorous attitude to your experiments and a neat working atmosphere you create by yourself. A clean and good habit can improve your whole life.

 

So this is our "C3H3". We sincerely hope this proposal can improve safety in synthetic biology and genetic engineering.

 

Furthermore, we have another reasonable suggestion that every iGEM team should make a data table or survey results about public biosafety or laboratory safety and security of the projects. Every team can submit a survey report attached with questionnaire and analyzing data to the iGEM safety committee. More details are to be discussed.