CRISPRi

June 6, 2014
Digested pSB1C3 backbone with EcoRI and PstI and gel purified
June 9, 2014
Received synthesized sgRNA 1 and sgRNA 2 constructs from BioBasic and transformed the DNA into E. coli DH5α
June 11, 2014
Inoculated sgRNA 1 and 2 colonies from the transformation into over night liquid culture for frozen stocks and miniprep
June 18, 2014
Digested sgRNA 1 and 2 constructs with EcoRI and PstI, then gel purified the inserts for cloning into pSB1A3 Also digested sgRNA 1 with EcoRI and SpeI, and sgRNA 2 with XbaI and PstI for modified 3A assembly into pSB1A3
June 19, 2014
Digested pSB1A3 linearized backbone with EcoRI and PstI, then column purified.
Ligated pSB1A3 with the sgRNA 1 and 2 (E/P) inserts individually and with both sgRNA 1 (E/S) and sgRNA 2 (X/P) together
Ligated pSB1C3 backbone with sgRNA 1 (E/P) and sgRNA 2 (E/P) individually for BioBricks
June 20, 2014
Transformed all ligations into E. coli DH5α
June 21, 2014
Streak purified 4 colonies from each ligation
June 22, 2014
Inoculated 4 colonies of each ligation into overnight liquid culture for miniprep (patched colonies onto agar plates before inoculating
June 23, 2014
Miniprepped and did a diagnostic digest to see which clones contained the appropriate inserts: sgRNA 1 in pSB1A3 1 successful
sgRNA 2 in pSB1A3 3 successful
sgRNA 1 and sgRNA 2 in pSB1A3 0 successful
sgRNA 1 in pSB1C3 1 successful
sgRNA 2 in pSB1C3 2 successful
June 24, 2014
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June 25, 2014
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June 26, 2014
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July 3, 2014
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July 4, 2014
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July 9, 2014
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June 25, 2014
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RNAi

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YFP

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CONJUGATION

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OTHER

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