Team:Wageningen UR

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<li><img src="https://static.igem.org/mediawiki/2014/0/0d/Wageningen_UR_gallery_1.Bannana_trees.png" alt="image01" width="100%" height="150%" /></li>
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<li><img src="https://static.igem.org/mediawiki/2014/4/4b/Wageningen_UR_gallery_7.horizontal_gene_transfer.png" alt="image02" /></li>
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<p>visits</p>
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<h1 >WELCOME TO iGEM 2014! </h1>
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<p>Your team has been approved and you are ready to start the iGEM season!
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<br>On this page you can document your project, introduce your team members, document your progress <br> and share your iGEM experience with the rest of the world! </p>
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<br>
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<p style="color:#E7E7E7"> <a href="https://2014.igem.org/wiki/index.php?title=Team:Wageningen_UR&action=edit"style="color:#FFFFFF"> Click here  to edit this page!</a> </p>
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<a href="https://2014.igem.org/Team:Wageningen_UR"style="color:#000000">Home </a> </td>
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<a href="https://2014.igem.org/Team:Wageningen_UR/Team"style="color:#000000"> Team </a> </td>
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<a href="https://igem.org/Team.cgi?year=2014&team_name=Wageningen_UR"style="color:#000000"> Official Team Profile </a></td>
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<a href="https://2014.igem.org/Team:Wageningen_UR/Project"style="color:#000000"> Project</a></td>
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<a href="https://2014.igem.org/Team:Wageningen_UR/Parts"style="color:#000000"> Parts</a></td>
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<a href="https://2014.igem.org/Team:Wageningen_UR/Modeling"style="color:#000000"> Modeling</a></td>
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<a href="https://2014.igem.org/Team:Wageningen_UR/Safety"style=" color:#000000"> Safety </a></td>
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<a href="https://2014.igem.org/Team:Wageningen_UR/Attributions"style="color:#000000"> Attributions </a></td>
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<p> Please be sure to keep these links, your audience will want to find your: </p>
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<!-- Links to other team pages -->
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<ul>
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<li><a href="https://2014.igem.org/Team:Wageningen_UR">Home</a> </li>
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<li><a href="https://2014.igem.org/Team:Wageningen_UR/Team">Team</a> </li>
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<li><a href="https://igem.org/Team.cgi?year=2013&team_name=Wageningen_UR">Official Team Profile</a> </li>
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<li><a href="https://2014.igem.org/Team:Wageningen_UR/Project">Project</a> </li>
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<li><a href="https://2014.igem.org/Team:Wageningen_UR/Parts">Parts</a> </li>
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<li><a href="https://2014.igem.org/Team:Wageningen_UR/Modeling">Modeling</a> </li>
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<li><a href="https://2014.igem.org/Team:Wageningen_UR/Notebook">Notebook</a> </li>
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<li><a href="https://2014.igem.org/Team:Wageningen_UR/Safety">Safety</a> </li>
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<li><a href="https://2014.igem.org/Team:Wageningen_UR/Attributions">Attributions</a> </li>
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<td > </td>
 
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<p>There are a few wiki requirements teams must follow:</p>
 
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<li>All pages, images and files must be hosted on the <a href ="https://2014.igem.org/Special:Upload">  2014.igem.org server</a>. </li>
 
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<li>All pages must be created under the team’s name space.</li>
 
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<li>As part of your documentation, keep the links from the menu to the left. </li>
 
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<li>Do not use flash in wiki code. </li>
 
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<li>The <a href="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png"> iGEM logo </a> should be placed on the upper part of every page and should link to <a href="https://2014.igem.org/Main_Page">2014.igem.org</a>.</li>
 
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<p>Visit the <a href="https://2014.igem.org/Wiki_How-To"> Wiki How To page </a> for a complete list of requirements, tips and other useful information. </p>
 
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<a href="https://2014.igem.org/Team:Wageningen_UR/overview" title="Click to take a tour!">
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<h1><b>Saving the bananas</b></h1>
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<p> Every time you go to the supermarket or to the local market to buy bananas you take for granted that there will be bananas readily available for you to enjoy and savour. However, banana plants are under threat and a world without bananas is more plausible than we all might imagine. Banana plants are threatened by <i>Fusarium oxysporum</i>. This pathogenic soil fungus enters plants through their root systems and lives off of them until they die. This fungus currently threatens all banana plants worldwide. Bananas, apart from being a delicious fruit, have economic importance in many tropical regions and are an important part of the diet. These are the reasons why the <b>iGEM team Wageningen 2014</b> has designed and created BananaGuard, a genetic system in <i>Pseudomonas putida</i> that detects the presence of <i>F. oxysporum</i> in the soil and produces a combination of antifungals to remove the fungal threat. If you want to read more about the system and our work during the last six months, the <b>iGEM team Wageningen 2014</b> invites you to continue surfing around our Wiki.</p>
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<tr><td colspan="3" > <h3> Tips  </h3></td></tr>
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  <source src="https://static.igem.org/mediawiki/2014/c/c3/Wageningen_UR_synenergene_movie.mp4" type="video/mp4">
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  <source src="https://static.igem.org/mediawiki/2014/2/20/Wageningen_UR_synenergene_movie.mov" type="video/mov">
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<p>We are currently working on providing teams with some easy to use design templates.
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  <source src="https://static.igem.org/mediawiki/2014/0/08/Wageningen_UR_synenergene_movie.ogg" type="video/ogg">
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<br> In the meantime you can also view other team wikis for inspiration! Here are some very good examples</p>
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  <p>Your browser does not support this video. Please <a href="http://youtu.be/grzNW8j1nrs">watch it on YouTube</a> or upgrade your browser.</p>
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<li> <a href="https://2013.igem.org/Team:SDU-Denmark/"> 2013 SDU Denmark </a> </li>
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</video>  
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<li> <a href="https://2013.igem.org/Team:SYSU-China">2013 SYSU China</a> </li>
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<figcaption>Visualisation of BananaGuard. <a href="http://youtu.be/grzNW8j1nrs" class="soft_link">Watch this video on youtube.</a></figcaption>
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<li> <a href="https://2013.igem.org/Team:Shenzhen_BGIC_ATCG"> 2013 Shenxhen BGIG ATCG </a></li>
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<li> <a href="https://2013.igem.org/Team:Colombia_Uniandes">2013 Colombia Unianades </a></li>
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<li> <a href="https://2013.igem.org/Team:Lethbridge">2013 Lethbridge</a></li>
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</ul>
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<p>For a full wiki list, you can visit <a href="https://igem.org/Team_Wikis?year=2013">iGEM 2013 web sites </a> and <a href="https://igem.org/Team_Wikis?year=2012">iGEM 2012 web sites</a>  lists. </p>
 
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<h1>Going for Gold</h1>
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<p>As an iGEM team we worked very hard for the past couple of months with the medal requirements in mind. Below is a list of why we deserve gold this year.</p>
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                            <div style="padding-left:20px">
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<img src="https://static.igem.org/mediawiki/2014/b/be/Wageningen_UR_bronze_banana_medal.png" style="float:left;margin-right:10px;"/><h3 style="font-size:20px;padding-top:12px;">Bronze</h3>
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<ul style="list-style-image:url('https://static.igem.org/mediawiki/2014/c/c8/Wageningen_UR_check_sign.png')">
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<li>Registered for iGEM</li>
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<li>Completed judging form</li>
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<li>Have a team Wiki</li>
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<li>Present a poster and talk at the iGEM jamboree</li>
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<li>Documented attributions</li>
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<li>Documented and submitted <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/overview/parts" target="blank"> <b>27</b> parts</a> to the iGEM Registry</li>
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<li>Met criteria for bronze</li>
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<img src="https://static.igem.org/mediawiki/2014/c/c0/Wageningen_UR_silver_banana_medal.png" style="float:left;margin-right:10px;" /><h3 style="font-size:20px;padding-top:3px;">Silver</h3>
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<li>Validated and submitted the following Biobrick parts from our own project: Fusaric acid dependent promoter <a class="soft_link" href="http://parts.igem.org/Part:BBa_K1493000"target="blank">(Bba_K1493000)</a>, <i>pfri</i> (<a class="soft_link" href="http://parts.igem.org/Part:BBa_K1493200"target="blank">Bba_K1493200</a>) and Kill switch genes and promoters (<a class="soft_link" href="http://parts.igem.org/Part:BBa_K1493801"target="blank">Bba_K1493801</a>, <a class="soft_link" href="http://parts.igem.org/Part:BBa_K1493802"target="blank">Bba_K1493802</a>, <a class="soft_link" href="http://parts.igem.org/Part:BBa_K1493804"target="blank">Bba_K1493804</a>, <a class="soft_link" href="http://parts.igem.org/Part:BBa_K1493805"target="blank">Bba_K1493805</a> and <a class="soft_link" href="http://parts.igem.org/Part:BBa_K1493806"target="blank">Bba_K1493806</a>) </li>
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<li>Characterized the following Biobrick parts from our own project: Fusaric acid dependent promoter <a class="soft_link" href="http://parts.igem.org/Part:BBa_K1493000"target="blank">(Bba_K1493000)</a>, <i>pfri</i> (<a class="soft_link" href="http://parts.igem.org/Part:BBa_K1493200"target="blank">Bba_K1493200</a>) </li>
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<li>Considered safety in our project by implementing a <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/project/kill-switch"target="blank">Kill-switch</a> system and a system to prevent <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/project/gene_transfer"target="blank">horizontal gene transfer</a></li>
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<li>Collaborated with Synenergene and discussed many safety-concerning topics in synthetic biology and created techno-moral vignettes based on our project (see <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/outreach/synenergene"target="blank">Synenergene</a>).</li>
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<li>Met all criteria for silver</li>
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<img src="https://static.igem.org/mediawiki/2014/f/f3/Wageningen_UR_gold_banana_medal.png" style="float:left;margin-right:10px;" /><h3 style="font-size:20px;padding-top:3px;">Gold</h3>
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<ul style="list-style-image:url('https://static.igem.org/mediawiki/2014/c/c8/Wageningen_UR_check_sign.png')">
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<li>Improved the functions of existing BioBrick promoter parts (<a class="soft_link" href="http://parts.igem.org/Part:BBa_K1493504"target="blank">BBa_K1493504</a>, <a class="soft_link" href="http://parts.igem.org/Part:BBa_K1493501"target="blank">BBa_K1493501</a>) by an <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/project/characterization"target="blank">extensive characterization</a></li>
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<li>Collaborated with iGEM <a class="soft_link" href="https://2014.igem.org/Team:TU_Delft-Leiden"target="blank">TU_Delft-Leiden</a> from the Netherlands by quantifying biofilm production formed in <i>E. coli</i> (see <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/outreach/collaboration"target="blank">collaboration</a>)</li>
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<li>Organized the first Dutch National meetup with Dutch iGEM teams and laid a foundation for collaboration with the Dutch Institute of Health and Environment (RIVM) (see <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/outreach/meetup"target="blank">National meet-up</a>)</li>
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<li>A symposium and panel session was organized with to inform government officials about the risks and possibilities of synthetic biology, sparking the public debate about the use of synthetic biology (see <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/outreach/policy"target="blank">policy</a>)</li>
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<li>Interviewed and discussed our project with panama disease specialists and stakeholders (see <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/outreach/interviews"target="blank">interview</a>)</li>
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<li>Participated in <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/project/interlab"target="blank">interlab study</a></li>
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<li>Met all criteria for gold</li>
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</ul>
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<p><b>For more details check out our <a class="soft_link" href="https://2014.igem.org/Team:Wageningen_UR/overview/achievements"target="blank">achievements</a> page!</b></p>
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</div>
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<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
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<br></br>
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<h1>Sponsors</h1>
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<div class="sponsor_box">
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<a class="sponsor_rectangle" href="http://www.wageningenur.nl/en/Benefactors/Service/About-Wageningen-University-Fund.htm" target="blank"><img src="https://static.igem.org/mediawiki/2014/6/6f/Wageningen_UR_WUF_EN.png" style="width:150px"></a>
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<a class="sponsor_rectangle" href="http://www.erasynbio.eu/" target="blank"><img src="https://static.igem.org/mediawiki/2014/e/ea/Wageningen_UR_erasynbio.jpg"></a>
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<a class="sponsor_rectangle" href="http://www.synenergene.eu/" target="blank"><img src="https://static.igem.org/mediawiki/2014/4/48/Wageningen_UR_synenergene.png"></a>
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<a class="sponsor_rectangle" href="http://www.snapgene.com/" target="blank"><img src="https://static.igem.org/mediawiki/2014/f/f0/Wageningen_UR_snapgene.png"></a>
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<a class="sponsor_rectangle" href="http://www.sigmaaldrich.com/sigma-aldrich/home.html" target="blank"><img src="https://static.igem.org/mediawiki/2014/6/61/Wageningen_UR_sigma.jpg"></a>
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<a class="sponsor_rectangle" href="http://www.gilson.com/" target="blank"><img src="https://static.igem.org/mediawiki/2014/b/be/Wageningen_UR_gilson.jpg"></a>
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<a class="sponsor_rectangle" href="http://www.neb.com/" target="blank"><img src="https://static.igem.org/mediawiki/2014/d/da/Wageningen_UR_neb.jpg"></a>
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<a class="sponsor_rectangle" href="http://www.dsm.com/corporate/home.html" target="blank"><img src="https://static.igem.org/mediawiki/2014/9/9f/Wageningen_UR_dsm.png"></a>
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<a class="sponsor_wur" href="http://www.wageningenur.nl/en.htm" target="blank"><img src="https://static.igem.org/mediawiki/2014/6/6d/Wageningen_UR_sponsor_departements1.jpg"></a>
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<div class="clear"></div>
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<a class="sponsor_square" href="http://www.vlaggraduateschool.nl/" target="blank"><img src="https://static.igem.org/mediawiki/2014/8/85/Wageningen_UR_vlag.jpg"></a>
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<a class="sponsor_square" href="http://www.be-basic.org/" target="blank"><img src="https://static.igem.org/mediawiki/2014/c/c5/Wageningen_UR_be-basic.png"></a>
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                                <div class="clear"></div>
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<ul>
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<li>State your accomplishments! Tell people what you have achieved from the start. </li>
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</div>
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<li>Be clear about what you are doing and what you plan to do.</li>
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</html>
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<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
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{{:Team:Wageningen_UR/templates/footer}}
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<li>Make sure information is easy to find; nothing should be more than 3 clicks away.  </li>
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<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
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<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="">iGEM 2013 calendar</a> </li>
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<li>Have lots of fun! </li>
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</ul>
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</br>
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</td>
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</tr>
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</table>
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Latest revision as of 02:50, 18 October 2014

Wageningen UR iGEM 2014

 

 

 

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visits


Saving the bananas

Every time you go to the supermarket or to the local market to buy bananas you take for granted that there will be bananas readily available for you to enjoy and savour. However, banana plants are under threat and a world without bananas is more plausible than we all might imagine. Banana plants are threatened by Fusarium oxysporum. This pathogenic soil fungus enters plants through their root systems and lives off of them until they die. This fungus currently threatens all banana plants worldwide. Bananas, apart from being a delicious fruit, have economic importance in many tropical regions and are an important part of the diet. These are the reasons why the iGEM team Wageningen 2014 has designed and created BananaGuard, a genetic system in Pseudomonas putida that detects the presence of F. oxysporum in the soil and produces a combination of antifungals to remove the fungal threat. If you want to read more about the system and our work during the last six months, the iGEM team Wageningen 2014 invites you to continue surfing around our Wiki.


Visualisation of BananaGuard. Watch this video on youtube.

Going for Gold

As an iGEM team we worked very hard for the past couple of months with the medal requirements in mind. Below is a list of why we deserve gold this year.


Bronze


  • Registered for iGEM
  • Completed judging form
  • Have a team Wiki
  • Present a poster and talk at the iGEM jamboree
  • Documented attributions
  • Documented and submitted 27 parts to the iGEM Registry
  • Met criteria for bronze

Silver



Gold


  • Improved the functions of existing BioBrick promoter parts (BBa_K1493504, BBa_K1493501) by an extensive characterization
  • Collaborated with iGEM TU_Delft-Leiden from the Netherlands by quantifying biofilm production formed in E. coli (see collaboration)
  • Organized the first Dutch National meetup with Dutch iGEM teams and laid a foundation for collaboration with the Dutch Institute of Health and Environment (RIVM) (see National meet-up)
  • A symposium and panel session was organized with to inform government officials about the risks and possibilities of synthetic biology, sparking the public debate about the use of synthetic biology (see policy)
  • Interviewed and discussed our project with panama disease specialists and stakeholders (see interview)
  • Participated in interlab study
  • Met all criteria for gold

For more details check out our achievements page!



Sponsors

Retrieved from "http://2014.igem.org/Team:Wageningen_UR"