Team:Vanderbilt/NotebookSubPageBuilder

From 2014.igem.org

(Difference between revisions)
 
(10 intermediate revisions not shown)
Line 174: Line 174:
     subPage.createSpring2014Right = function() {
     subPage.createSpring2014Right = function() {
-
         var img1 = subPage.createPhoto("VU_Genomic_DNA_bands_check_LNS.JPG", "Genomic DNA bonds check", 395.2, 516.8,
+
         var img1 = subPage.createPhoto("https://static.igem.org/mediawiki/parts/0/00/VU_Genomic_DNA_bands_check_LNS.JPG", "Genomic DNA bonds check", 320, 440,
         "An example of a gel showing high molecular weight (>10 kb) bands corresponding to successfully " +
         "An example of a gel showing high molecular weight (>10 kb) bands corresponding to successfully " +
         "extracted plant genomic DNA (in this case, samples LNS1 and LNS2 from Arabidopsis DNA");
         "extracted plant genomic DNA (in this case, samples LNS1 and LNS2 from Arabidopsis DNA");
-
         var img2 = subPage.createPhoto("VU_humelene_genomic_dna_pcr.JPG", "Humelene Genomic DNA PCR", 374, 348.5,
+
         var img2 = subPage.createPhoto("https://static.igem.org/mediawiki/parts/5/5f/VU_humelene_genomic_dna_pcr.JPG", "Humelene Genomic DNA PCR", 350, 320,
             "PCR products resulting from primers targeted to hmelene synthase using Zingiber genomic" +
             "PCR products resulting from primers targeted to hmelene synthase using Zingiber genomic" +
             "DNA as a template. The sixth ladder band down corresponds to 3000 bp.");
             "DNA as a template. The sixth ladder band down corresponds to 3000 bp.");
-
         var img3 = subPage.createPhoto("VU_labeled_PCON_Gel.JPG", "Labeled PCON Gel", 374, 348.5,
+
         var img3 = subPage.createPhoto("https://static.igem.org/mediawiki/parts/e/e8/VU_labeled_PCON_Gel.jpg", "Labeled PCON Gel", 374, 348.5, "Labeled PCON Gel");
-
            "Labeled PCON Gel");
+
         rightPageBuilder.appendChild(img1);
         rightPageBuilder.appendChild(img1);
Line 230: Line 229:
     subPage.createSummer2014Right = function() {
     subPage.createSummer2014Right = function() {
-
         var img = subPage.createPhoto("VU_genomic_DNA_PCR.jpg",
+
         var img = subPage.createPhoto("https://static.igem.org/mediawiki/parts/d/d5/VU_genomic_DNA_PCR.jpg",
             "The results of the genomic DNA PCR on all of the plant species.",
             "The results of the genomic DNA PCR on all of the plant species.",
             554, 735,
             554, 735,
Line 432: Line 431:
     subPage.createFall2014Right = function() {
     subPage.createFall2014Right = function() {
-
         var img1 = subPage.createPhoto("VU_First_RT_PCR_results_cad_hum_sab_san.JPG",
+
 
 +
         var img1 = subPage.createPhoto("https://static.igem.org/mediawiki/parts/e/e8/VU_First_RT_PCR_results.JPG",
             "Results of a reverse transcription PCR, showing the cDNA amplified from plant RNA template.",
             "Results of a reverse transcription PCR, showing the cDNA amplified from plant RNA template.",
             346, 417,
             346, 417,
         "Results of a reverse transcription PCR, showing the cDNA amplified from plant RNA template.");
         "Results of a reverse transcription PCR, showing the cDNA amplified from plant RNA template.");
-
         var img2 = subPage.createPhoto("VU_Diagnostic_Digest_10-9.JPG",
+
         var img2 = subPage.createPhoto("https://static.igem.org/mediawiki/parts/a/a2/VU_DD.png",
             "Diagnostic digest produces bands of exactly the correct size (from left to right, 2700, 2700," +
             "Diagnostic digest produces bands of exactly the correct size (from left to right, 2700, 2700," +
             "and 950, 2700, and 1700, confirming that pVU14004 was successfully constructed.",
             "and 950, 2700, and 1700, confirming that pVU14004 was successfully constructed.",
Line 444: Line 444:
             "and 950, 2700, and 1700, confirming that pVU14004 was successfully constructed.");
             "and 950, 2700, and 1700, confirming that pVU14004 was successfully constructed.");
-
         var img3 = subPage.createPhoto("VU_PVU14004_Conf_9_19.jpg",
+
         var img3 = subPage.createPhoto("https://static.igem.org/mediawiki/parts/9/9c/VU_PVU14004.png",
             "10-9 Diagnostic digest",
             "10-9 Diagnostic digest",
             340, 286.375,
             340, 286.375,
             "10-9 Diagnostic digest");
             "10-9 Diagnostic digest");
-
         var img4 = subPage.createPhoto("VU_10-11_diagnostic_digest.JPG",
+
         var img4 = subPage.createPhoto("https://static.igem.org/mediawiki/parts/5/53/VU_10-11_diagnostic_digest.JPG",
             "10-11 Diagnostic digest",
             "10-11 Diagnostic digest",
             331.5, 381.8,
             331.5, 381.8,

Latest revision as of 00:02, 26 January 2015

function NotebookSubPageBuilder() {

   var subPage = new SubPageBuilder();
   subPage.maxSubPage = 3;
   subPage.getMaxSubPage = function() {
       return subPage.maxSubPage;
   };
   subPage.createSubPage = function(subPageNum) {
       switch(subPageNum) {
           case 1:
               subPage.createSpring2014Left();
               subPage.createSpring2014Right();
               break;
           case 2:
               subPage.createSummer2014Left();
               subPage.createSummer2014Right();
               break;
           case 3:
               subPage.createFall2014Left();
               subPage.createFall2014Right();
               break;
       }
   };
   subPage.createSpring2014Left = function() {
       var header = document.createElement("header");
       header.appendChild(document.createTextNode("Spring 2014"));
       var p_m27 = subPage.createP("March 27th");
       var p_m30 = subPage.createP("March 30th");
       var p_m31 = subPage.createP("March 31st");
       var p_a1 = subPage.createP("April 1st");
       var p_a2 = subPage.createP("April 2nd");
       var p_a3 = subPage.createP("April 3rd");
       var p_a4 = subPage.createP("April 4th");
       var p_a5 = subPage.createP("April 5th");
       var p_a7 = subPage.createP("April 7th");
       var p_a24 = subPage.createP("April 24th");
       var p_a25 = subPage.createP("April 25th");
       var p_a27 = subPage.createP("April 27th");
       var p_a29 = subPage.createP("April 29th");
       var m27 = document.createElement("ul");
       var m30 = document.createElement("ul");
       var m31 = document.createElement("ul");
       var a1 = document.createElement("ul");
       var a2 = document.createElement("ul");
       var a3 = document.createElement("ul");
       var a4 = document.createElement("ul");
       var a5 = document.createElement("ul");
       var a7 = document.createElement("ul");
       var a24 = document.createElement("ul");
       var a25 = document.createElement("ul");
       var a27 = document.createElement("ul");
       var a29 = document.createElement("ul");
       var text = [["Extracted genomic DNA from 100 mg of Arabidopsis thaliana leaves using a Viogene DNA extraction kit. Samples were " +
       "labeled ZIN for zingiberene."],
           ["Two samples were prepared and nanodropped. The concentration of the first w" +
           "as 2.6 ng/ul, and the second was 3.5 ng/ul of DNA, indicating a minimal yield of DNA."]];
       subPage.addMultLI(m27, text);
       text = [["Extracted genomic DNA from 100 mg of Picea abies needles using the same extr" +
       "action kit and protocol. Samples were labeled CAR for carene."],
           ["Two samples were prepared and nanodropped. The concentration of the first w" +
           "as 2.6 ng/ul, and the second was 3.5 ng/ul of DNA, indicating a minimal yield of DNA."]];
       subPage.addMultLI(m30, text);
       text = [["Ran a 0.6 % argarose gel on the DNA extracted from ZIN and CAR, as well as the column flow-throu" +
       "gh from the kit."],
           ["ZIN1, ZIN2, CAR1, and CAR2 all show a faint but distinct DNA band above the highest rung on the DNA l" +
           "adder (>10kb), showing the presence of DNA. No bands were seen on the kit flow-through. Indicates successful g" +
           "enomic extraction."],
           ["Preformed a second genomic extraction on Picea abies to improve yield. Nanodrop shows CAR3 to be " +
           "at 6.2 ng/ul and CAR4 to be 11.5 ng/ul."],
           ["Extracted genomic DNA from Gossypium hirsutum. Samples nanodroppped: CAD1 1.8 ng/ul and CAD2 7.8 ng/ul."]];
       subPage.addMultLI(m31, text);
       text = [["Ran a gel on CAR3, CAR4, CAD1, and CAD2. Brighter genomic DNA bands were seen on the cadinene camples" +
       " than before, but cadinene samples showed significant smearing near the top of the gel."]];
       subPage.addMultLI(a1, text);
       text = [["Extracted genomic DNA from Salvia officinalis . Samples nanodropped: SAB1 7.5 ng/ul, and SAB 11.4 ng/ul."],
           ["Extracted genomic DNA from Mentha citrata . Samples nanodropped: LNR1 3.4 ng/ul, LNR2 6.2 ng/ul, LNR3 7.3 ng/ul"],
           ["E. coli containing p404GALS and pDZ207 from Addgene were grown on LB plates with ampicilin. These were min" +
           "iprepped using a Viogen kit. Samples nanodropped: p404GALS (A) 130.2 ng/ul, p404GALS (B) 112.3 ng/ul, pDZ2" +
           "07 (A) 145.3 ng/ul, pDZ207 (B) 84.1 ng/ul."]];
       subPage.addMultLI(a2, text);
       text = [["Extracted genomic DNA again from Arabidopsis thaliana . Sample nanodropped: LNS1 53.4 ng/ul, LNS2 585.2 ng/ul"],
           ["Ran gel on LNR1, LNR2, LNR3, LNS1, LNS2, SAB1, and SAB2. All show high weight DNA bands, with Linalool (S) sampl" +
           "es having the brightest."]];
       subPage.addMultLI(a3, text);
       text = [["Extracted genomic DNA from Zingiber zermbet . Sample nanodropped: HUM1 31.9 ng/ul and HUM2 18.6 ng/ul"],
           ["Extracted genomic DNA from Ocimum basilicum . Sample nanodropped: GER1 2.3 ng/ul"]];
       subPage.addMultLI(a4, text);
       text = [["Extracted genomic DNA from Santalum album seeds since the sapling was still not fully grown. Sample nan" +
       "odropped: SAN1 53.8 ng/ul and SAN2 28.4 ng/ul"]];
       subPage.addMultLI(a5, text);
       text = [["Extracted genomic DNA from Perilla frutescens . Sample nanodropped: MYR1 632.8 ng/ul and MYR2 958.6 ng/ul"],
           ["Extracted genomic DNA from Perilla frutescens . Sample nanodropped: MYR1 632.8 ng/ul and MYR2 958.6 ng/ul"]];
       subPage.addMultLI(a7, text);
       text = [["Preformed PCR using zingiberene synthase primers on LNS2 genomic DNA and using linalool (S) synthase p" +
       "rimers on the sample template."],
           ["Ran gel on PCR product. Resulted in no visible bands formed."]];
       subPage.addMultLI(a24, text);
       text = [["Took 1.8 ul of HUM1 genomic DNA and preformed a PCR with humelene synthase primers."],
           ["Ran gel on PCR product. Resulted in three total bands, one faint around 1.2 kb, and two bands very close " +
           "in size just under 3.0 kb."],
           ["Both ~3 kb bands were gel extracted, combining across all four lanes. Samples nanodropped: HUM-top 8.5 ng/u" +
           "l, HUM-bottom 10.6 ng/ul."]];
       subPage.addMultLI(a25, text);
       text = [["Preformed PCR using linalool (R) synthase primers on LNR3 genomic DNA."],
           ["Ran gel on PCR product. Resulted in no visible bands formed."]];
       subPage.addMultLI(a27, text);
       text = [["Preformed PCR using myrcene synthase primers on MYR2 genomic DNA."],
           ["Ran gel on PCR product. Smeared bands on gel but no distinct bands."],
           ["Preformed overlap-extension PCR on the gel extracted humelene samples (both HUM-top and HUM-bottom) to add " +
           "epitope tag sequence."],
           ["Ran gel on OE-PCR product. Only extremely faint bands were visible."]];
       subPage.addMultLI(a29, text);
       leftPageBuilder.appendChild(header);
       leftPageBuilder.appendChild(p_m27);
       leftPageBuilder.appendChild(m27);
       leftPageBuilder.appendChild(p_m30);
       leftPageBuilder.appendChild(m30);
       leftPageBuilder.appendChild(p_m31);
       leftPageBuilder.appendChild(m31);
       leftPageBuilder.appendChild(p_a1);
       leftPageBuilder.appendChild(a1);
       leftPageBuilder.appendChild(p_a2);
       leftPageBuilder.appendChild(a2);
       leftPageBuilder.appendChild(p_a3);
       leftPageBuilder.appendChild(a3);
       leftPageBuilder.appendChild(p_a4);
       leftPageBuilder.appendChild(a4);
       leftPageBuilder.appendChild(p_a5);
       leftPageBuilder.appendChild(a5);
       leftPageBuilder.appendChild(p_a7);
       leftPageBuilder.appendChild(a7);
       leftPageBuilder.appendChild(p_a24);
       leftPageBuilder.appendChild(a24);
       leftPageBuilder.appendChild(p_a25);
       leftPageBuilder.appendChild(a25);
       leftPageBuilder.appendChild(p_a27);
       leftPageBuilder.appendChild(a27);
       leftPageBuilder.appendChild(p_a29);
       leftPageBuilder.appendChild(a29);
   };
   subPage.createSpring2014Right = function() {
       var img1 = subPage.createPhoto("VU_Genomic_DNA_bands_check_LNS.JPG", "Genomic DNA bonds check", 320, 440,
       "An example of a gel showing high molecular weight (>10 kb) bands corresponding to successfully " +
       "extracted plant genomic DNA (in this case, samples LNS1 and LNS2 from Arabidopsis DNA");
       var img2 = subPage.createPhoto("VU_humelene_genomic_dna_pcr.JPG", "Humelene Genomic DNA PCR", 350, 320,
           "PCR products resulting from primers targeted to hmelene synthase using Zingiber genomic" +
           "DNA as a template. The sixth ladder band down corresponds to 3000 bp.");
       var img3 = subPage.createPhoto("VU_labeled_PCON_Gel.jpg", "Labeled PCON Gel", 374, 348.5, "Labeled PCON Gel");
       rightPageBuilder.appendChild(img1);
       rightPageBuilder.appendChild(img2);
       rightPageBuilder.appendChild(img3);
   };
   subPage.createSummer2014Left = function() {
       var header = document.createElement("header");
       header.appendChild(document.createTextNode("Summer 2014"));
       var p_may = subPage.createP("May");
       var p_june = subPage.createP("June");
       var p_july = subPage.createP("July");
       var may = document.createElement("ul");
       var june = document.createElement("ul");
       var july = document.createElement("ul");
       var text = [["Continued troubleshooting PCR reaction conditions for all of the terpenes that failed " +
                   "to amplify. Tried adjusting template concentration, adding DMSO, changing thermocycler program, hot " +
                   "start PCR, new polymerase and dNTPs."],
                   ["Re-did genomic extractions for those that produced less than 50 ng/ul of genomic DNA. " +
                   "Used this new template in further PCRs."],
                   ["Extracted the Gal10 gene from our template plasmid and a kanomycin resistance gene borde" +
                   "red by LoxP sites."]];
       subPage.addMultLI(may, text);
       text = [["All of the gene cassettes for plasmid construction that were successfully extracted so far" +
       " were ligated together and inserted into the MCS of pUC19. This formed our first intermediate plasmid."]];
       subPage.addMultLI(june, text);
       text = [["Finally reached the point that all terpene genes were consistently amplifying with the " +
       "synthase gene primers. The genomic DNA sample for sabinene was completely used before this point, " +
       "although all other of the 8 terpenes showed clear bands.."]];
       subPage.addMultLI(july, text);
       leftPageBuilder.appendChild(header);
       leftPageBuilder.appendChild(p_may);
       leftPageBuilder.appendChild(may);
       leftPageBuilder.appendChild(p_june);
       leftPageBuilder.appendChild(june);
       leftPageBuilder.appendChild(p_july);
       leftPageBuilder.appendChild(july);
   };
   subPage.createSummer2014Right = function() {
       var img = subPage.createPhoto("VU_genomic_DNA_PCR.jpg",
           "The results of the genomic DNA PCR on all of the plant species.",
           554, 735,
           "The results of the genomic DNA PCR indicated each gene had a large fraction of introns. " +
           "None of the genes had a distinct band at exactly the right weight corresponding with what " +
           "the intron-less cDNA size would be.");
       rightPageBuilder.appendChild(img);
   };
   subPage.createFall2014Left = function() {
       var header = document.createElement("header");
       header.appendChild(document.createTextNode("Spring 2014"));
       var p_aug = subPage.createP("August");
       var p_sept = subPage.createP("September");
       var p_s17 = subPage.createP("September 17th");
       var p_s18 = subPage.createP("September 18th");
       var p_s19 = subPage.createP("September 19th");
       var p_s20 = subPage.createP("September 20th");
       var p_s26 = subPage.createP("September 26th");
       var p_o5 = subPage.createP("October 5th");
       var p_o7 = subPage.createP("October 7th");
       var p_o9 = subPage.createP("October 9th");
       var p_o10 = subPage.createP("October 10th");
       var p_o11 = subPage.createP("October 11th");
       var p_o12 = subPage.createP("October 12th");
       var p_o13 = subPage.createP("October 13th");
       var p_o14 = subPage.createP("October 14th");
       var p_o15 = subPage.createP("October 15th");
       var p_o16 = subPage.createP("October 16th");
       var aug = document.createElement("ul");
       var sept = document.createElement("ul");
       var s17 = document.createElement("ul");
       var s18 = document.createElement("ul");
       var s19 = document.createElement("ul");
       var s20 = document.createElement("ul");
       var s26 = document.createElement("ul");
       var o5 = document.createElement("ul");
       var o7 = document.createElement("ul");
       var o9 = document.createElement("ul");
       var o10 = document.createElement("ul");
       var o11 = document.createElement("ul");
       var o12 = document.createElement("ul");
       var o13 = document.createElement("ul");
       var o14 = document.createElement("ul");
       var o15 = document.createElement("ul");
       var o16 = document.createElement("ul");
       var text = [["Moved the lab into its new space before the start of the semester."],
           ["Created the plasmid intermediate pVU1400A, which is missing only a single insert to become pVU14004."]];
       subPage.addMultLI(p_aug, text);
       text = [["Ran RNA extraction on all the plants that were still available. This excluded Myrcene and " +
       "Linalool (R) since both Perilla frutescens and Mentha aquatica had withered over the summered."],
           ["Repeated RNA extractions on those which showed appreciable concentration on the nanodrop. Event" +
           "ually all 7 remanining terpenes had plant RNA in appreciable quantities (most between 20-50 " +
           "ng/ul, with a few less than 10 and a few more than 100 ng/ul)."]];
       subPage.addMultLI(p_sept, text);
       text = [["Digested plasmid intermediate grown in demethylated bacteria with ClaI. Ligated final " +
           "insert into vector. No transfomants grow after 24 hours."],
           ["Diagnostic digest shows the ClaI enzyme is cutting properly. pUC19 positive control for transforma" +
           "tions show that the competent cells are working."]];
       subPage.addMultLI(p_s17, text);
       text = [["Ran reverse transcription PCR on extracted RNA to isolate synthase cDNA. Humelene and sabinene " +
       "show clear positive results, santalene shows amplification at smaller region, and cadinene shows no" +
       " cDNA bands."]];
       subPage.addMultLI(p_s18, text);
       text = [["Made liquid cultures of K546546 in preparation for mutagenesis. Also made glycerol stock to store at -80."],
           ["Diagnostic digest of ligation of pVU1400A intermediate and the final insert needed to make " +
           "finished plasmid. Gel clearly shows bands in exactly the correct positions for each of three " +
           "comparison conditions, proving that the creation of pVU14004 was finally successful.."]];
       subPage.addMultLI(p_s19, text);
       text = [["Miniprep of K546546 liquid cultures (1 ml ). First culture tube concentration of 85.7 ng/ul " +
               "DNA, second 105.1 ng/ul."],
               ["RNA extracted arabadopsis and Picea abies to improve yield and quality. Carene still failed to " +
               "get an RNA concentration greater than 10 ng/ul, while Arabidopsis produced 107 ng/ul with a go" +
               "od A260/A280 ratio."],
               ["Miniprep of K546546 liquid cultures (1 ml ). First culture tube concentration of 85.7 ng/ul " +
               "DNA, second 105.1 ng/ul"]];
       subPage.addMultLI(p_s20, text);
       text = [["RT-PCR done on humelene, linalool (S), sabinene, and zingiberene. Sabinene produces clear " +
       "bands, while zingiberene shows one faint band at roughly the correct size. Positive controls are also " +
       "run to confirm that the reverse transcription step is not the cause of any failures to amplify."]];
       subPage.addMultLI(p_s26, text);
       text = [["RT-PCR done on humelene, sabinene, and santalene. Sabinene again produces clear bands,and " +
       "santalene does as well although much fainter. Both bands were gel extracted to yield a small " +
       "(<10 ng/ul) amount of DNA."],
       ["Extracted DNA was ligated into pUC19 and transformed into E. coli."]];
       subPage.addMultLI(p_o5, text);
       text = [["Site direction mutagenesis kit and specially designed primers were used to mutagenize K546546 " +
       "at its BglI site, sabinene cDNA at its XbaI and EcoRI sites, and pVU14004 at its EcoRI and XbaI sites."],
           ["Mutagenesis product was transformed into E. coli."]];
       subPage.addMultLI(p_o7, text);
       text = [["Minipreps were done on 5 ml liquid cultures of mutagenized pVU14004, sabinene, and K546546. " +
       "Four liquid cultures were made for each, and both sabinene and pVU14004 were done in duplicate."],
           ["Diagnostic digests were done on miniprepped plasmid to check if the restriction sites were " +
           "mutagenized. pVU14004 appeared to have lost its XbaI site but not its EcoRI site, sabinene shows " +
           "a size that suggests it failed to ligate as an insert into pUC19, and K546 shows only a single " +
           "band at around its starting weight."]];
       subPage.addMultLI(p_o9, text);
       text = [["All 8 minipreps of sabinene ligated into pUC19 were digested with SpeI and ApaI to check for " +
       "the synthase insert. Only one, Sab B2, shows a second band at the right size."]];
       subPage.addMultLI(p_o10, text);
       text = [["Santalene synthase was ligated into pVU14004 and pSB1C3. E. coli was transformed and incubated."],
           ["The sites that failed to show mutagenesis were mutagenized again using and transformed into E. " +
           "coli. K546546 had its AgeI site mutagenized."]];
       subPage.addMultLI(p_o11, text);
       text = [["All liquid cultures were miniprepped, producing 8 samples of pVU14004 with confirmed XbaI " +
       "mutagenesis, 4 pVU14004 with no sites confirmed, 4 sabinene, and 6 samples produced from santalene in " +
       "pVU14004. None of the plates with santalene in pSB1C3 produced colonies."],
           ["Diagnostic digests were run on all miniprepped plasmid (K546- AgeI, BglI, SphI. Sabinene- EcoRI, " +
           "BamH1. Santalene in pVU- ApaI, XbaI. pVU- EcoRI, XbaI, BamHI, KpnI). Santalene appeared not to have " +
           "ligated into pVU14004. Sabinene did not have its EcoRI site removed by mutagenesis. K546546 had at least" +
           " one cut, but the second sample may have had one site mutagenized."],
           ["Santalene was re-ligated into pSB1C3 and transformed."]];
       subPage.addMultLI(p_o12, text);
       text = [["Santalene in pSB1C3 was miniprepped to good yield. Each of 4 replicates was digested with " +
       "SpeI and ApaI to test for ligation. The ApaI enzyme appears not have cut, but the fourth sample showed an " +
       "uncut plasmid size which corresponded to that of pSB1C with santalene successfully inserted."]];
       subPage.addMultLI(p_o13, text);
       text = "Ligated santalene synthase again into pVU14004 and transformed into E. coli.";
       subPage.addMultLI(p_o14, text);
       text = [["One colony grew and was put in liquid culture."],
           ["Culture miniprepped and digested. Again no gene insertion was detectable."]];
       subPage.addMultLI(p_o15, text);
       text = [["Transformed pVU14004 into a dam- strain of E. coli to address the methylation sensitivity of ApaI."],
           ["Finished planning and acquiring materials for GC-MS confirmation of terpene presence."]];
       subPage.addMultLI(p_o16, text);
       leftPageBuilder.appendChild(header);
       leftPageBuilder.appendChild(p_aug);
       leftPageBuilder.appendChild(aug);
       leftPageBuilder.appendChild(p_sept);
       leftPageBuilder.appendChild(sept);
       leftPageBuilder.appendChild(p_s17);
       leftPageBuilder.appendChild(s17);
       leftPageBuilder.appendChild(p_s18);
       leftPageBuilder.appendChild(s18);
       leftPageBuilder.appendChild(p_s19);
       leftPageBuilder.appendChild(s19);
       leftPageBuilder.appendChild(p_s20);
       leftPageBuilder.appendChild(s20);
       leftPageBuilder.appendChild(p_s26);
       leftPageBuilder.appendChild(s26);
       leftPageBuilder.appendChild(p_o5);
       leftPageBuilder.appendChild(o5);
       leftPageBuilder.appendChild(p_o7);
       leftPageBuilder.appendChild(o7);
       leftPageBuilder.appendChild(p_o9);
       leftPageBuilder.appendChild(o9);
       leftPageBuilder.appendChild(p_o10);
       leftPageBuilder.appendChild(o10);
       leftPageBuilder.appendChild(p_o11);
       leftPageBuilder.appendChild(o11);
       leftPageBuilder.appendChild(p_o12);
       leftPageBuilder.appendChild(o12);
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       leftPageBuilder.appendChild(o15);
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           346, 417,
       "Results of a reverse transcription PCR, showing the cDNA amplified from plant RNA template.");
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           "Diagnostic digest produces bands of exactly the correct size (from left to right, 2700, 2700," +
           "and 950, 2700, and 1700, confirming that pVU14004 was successfully constructed.",
           303, 314,
           "Diagnostic digest produces bands of exactly the correct size (from left to right, 2700, 2700," +
           "and 950, 2700, and 1700, confirming that pVU14004 was successfully constructed.");
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           "10-9 Diagnostic digest");
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           "10-11 Diagnostic digest");
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