http://2014.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen/Modeling&feed=atom&action=historyTeam:SUSTC-Shenzhen/Modeling - Revision history2024-03-28T11:51:36ZRevision history for this page on the wikiMediaWiki 1.16.5http://2014.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen/Modeling&diff=401699&oldid=prevGemon: /* Matlab code */2014-10-18T03:59:30Z<p><span class="autocomment">Matlab code</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Matlab code===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Matlab code===</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>A simple <del class="diffchange diffchange-inline">matlab </del>code: https://2014.igem.org/Team:SUSTC-Shenzhen/Modeling/matlabcode</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>A simple <ins class="diffchange diffchange-inline">Matlab </ins>code <ins class="diffchange diffchange-inline">example</ins>: https://2014.igem.org/Team:SUSTC-Shenzhen/Modeling/matlabcode</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Results==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Results==</div></td></tr>
</table>Gemonhttp://2014.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen/Modeling&diff=401245&oldid=prevGemon: /* Matlab analysis */2014-10-18T03:55:53Z<p><span class="autocomment">Matlab analysis</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>All parameters in Fig 4.1 and Fig 4.2 are the same. The only different between at first is the value of low-resistance T cells counting. If the number of low-resistance T cells is too small, it may increase for a while.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>All parameters in Fig 4.1 and Fig 4.2 are the same. The only different between at first is the value of low-resistance T cells counting. If the number of low-resistance T cells is too small, it may increase for a while.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">===Matlab code===</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">A simple matlab code: https://2014.igem.org/Team:SUSTC-Shenzhen/Modeling/matlabcode</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Results==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Results==</div></td></tr>
</table>Gemonhttp://2014.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen/Modeling&diff=393260&oldid=prevGemon: /* Formula derivation */2014-10-18T03:00:58Z<p><span class="autocomment">Formula derivation</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>\end{equation}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>\end{equation}</div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>\(f_m\) is also a variable.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>\(f_m\) is also a variable <ins class="diffchange diffchange-inline">and also has certain randomness</ins>.</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>\begin{equation}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>\begin{equation}</div></td></tr>
</table>Gemonhttp://2014.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen/Modeling&diff=389804&oldid=prevGemon at 02:34, 18 October 20142014-10-18T02:34:31Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Results==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Results==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>The relationship between cells and HIV is <del class="diffchange diffchange-inline">very </del>complex.If the environment doesn't change, we can stimulate the situation in Matlab for a short time. The result is that the CRISPR/Cas9 system will take effect. A small change may cause the butterfly effect.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>The relationship between cells and HIV is <ins class="diffchange diffchange-inline">too </ins>complex <ins class="diffchange diffchange-inline">that we can't make a model to fit out each situations. But the existence of the parameters enable us to handle most of the situations</ins>. If the environment doesn't change, we can stimulate the situation in Matlab for a short time. The result is that the CRISPR/Cas9 system will take effect. A small change may cause the butterfly effect.</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Reference==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Reference==</div></td></tr>
</table>Gemonhttp://2014.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen/Modeling&diff=386257&oldid=prevGemon: /* Formula derivation */2014-10-18T02:04:00Z<p><span class="autocomment">Formula derivation</span></p>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">\(f_m\) is also a variable.</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>\begin{equation}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>\begin{equation}</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>f_m=\xi_1(\frac{N_h}{N_h+N_l}+\xi_2r)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>f_m=\xi_1(\frac{N_h}{N_h+N_l}+\xi_2r)</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">\end{equation}</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></html></del></div></td><td colspan="2"> </td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">\begin{equation}</del></div></td><td colspan="2"> </td></tr>
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</table>Gemonhttp://2014.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen/Modeling&diff=386065&oldid=prevGemon: /* Results */2014-10-18T02:02:11Z<p><span class="autocomment">Results</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>The relationship between cells and HIV is very complex.If the environment doesn't change, we can stimulate the situation in Matlab for a short time. The result is that the CRISPR/Cas9 system will take effect.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>The relationship between cells and HIV is very complex.If the environment doesn't change, we can stimulate the situation in Matlab for a short time. The result is that the CRISPR/Cas9 system will take <ins class="diffchange diffchange-inline">effect. A small change may cause the butterfly </ins>effect.</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Reference==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Reference==</div></td></tr>
</table>Gemonhttp://2014.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen/Modeling&diff=385317&oldid=prevGemon: /* Condition 3 */2014-10-18T01:55:15Z<p><span class="autocomment">Condition 3</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><center>Fig 4.2 </center></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><center>Fig 4.2 </center></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>All parameters in Fig 4.1 and Fig 4.2 are the same. The only different between at first is the value of low-resistance T cells counting.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>All parameters in Fig 4.1 and Fig 4.2 are the same. The only different between at first is the value of low-resistance T cells counting<ins class="diffchange diffchange-inline">. If the number of low-resistance T cells is too small, it may increase for a while</ins>.</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Results==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Results==</div></td></tr>
</table>Gemonhttp://2014.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen/Modeling&diff=384754&oldid=prevGemon: /* Condition 3 */2014-10-18T01:49:50Z<p><span class="autocomment">Condition 3</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><center>{{SUSTC-Image|wiki/images/1/16/SUSTC-Shenzhen-2014-model-022.jpg }}</center></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><center>{{SUSTC-Image|wiki/images/1/16/SUSTC-Shenzhen-2014-model-022.jpg }}</center></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><center>Fig 4.2 </center></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><center>Fig 4.2 </center></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">All parameters in Fig 4.1 and Fig 4.2 are the same. The only different between at first is the value of low-resistance T cells counting.</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Results==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Results==</div></td></tr>
</table>Gemonhttp://2014.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen/Modeling&diff=383999&oldid=prevGemon at 01:43, 18 October 20142014-10-18T01:43:23Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>As is shown by the Fig 3., the HIV will reach a very high value and the patient will be very dangerous without the outside help.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>As is shown by the Fig 3., the HIV will reach a very high value and the patient will be very dangerous without the outside help.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">===Condition 3===</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><center>{{SUSTC-Image|wiki/images/e/eb/SUSTC-Shenzhen-2014-model-021.jpg }}</center></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><center>Fig 4.1 </center></ins></div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><center>{{SUSTC-Image|wiki/images/1/16/SUSTC-Shenzhen-2014-model-022.jpg }}</center></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><center>Fig 4.2 </center></ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Results==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>==Results==</div></td></tr>
</table>Gemonhttp://2014.igem.org/wiki/index.php?title=Team:SUSTC-Shenzhen/Modeling&diff=381450&oldid=prevGemon: /* Matlab analysis */2014-10-18T01:20:29Z<p><span class="autocomment">Matlab analysis</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>CRISPR/Cas9 system is introduced into the body, everything will change.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>CRISPR/Cas9 system is introduced into the body, everything will change.</div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">For different conditions, we change the values of parameters to suit a given situation. Here are some examples.</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Condition 1===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Condition 1===</div></td></tr>
</table>Gemon