Team:Marburg:Project:Notebook

From 2014.igem.org

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     <legend><a name="exp1.1">1.1 Overnight Preculture</a></legend>
     <legend><a name="exp1.1">1.1 Overnight Preculture</a></legend>
<div class="exp-content">
<div class="exp-content">
-
<p> 2x5 mL LB medium were inoculated with 50 &micro;L DH5Alpha, aliquoted  for a preculture and incubated overnight (16,5h) at 37&deg;C.</p>
+
<p> 2x5 mL LB medium were inoculated with 50 &micro;L DH5&alpha;, aliquoted  for a preculture and incubated overnight (16,5h) at 37 &deg;C.</p>
     </div>
     </div>
</fieldset>
</fieldset>
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<div class="exp-content">
<div class="exp-content">
     <!-- exp1.3 -->
     <!-- exp1.3 -->
-
<p>250ml were inoculated with 5ml of preculture and incubated until they reached an OD of 0,5. After centrifugation, the cell pellet was washed with HTP buffer and resuspended in 3ml HTP buffer. In the end, 225&micro;l DMSO was added to an end concenctration of 6-7%. The 50&micro;l aliquots were frozen in N2(l) and stored at -80&deg;C. </p>
+
<p>250 mL were inoculated with 5 mL of preculture and incubated until they reached an OD of 0,5. After centrifugation, the cell pellet was washed with HTP buffer and resuspended in 3 mL HTP buffer. In the end, 225 &micro;L DMSO was added to an end concentration of 6-7%. The 50 &micro;L aliquots were frozen in N<sub>2</sub>(l) and stored at -80 &deg;C. </p>
</div>
</div>
</fieldset>
</fieldset>
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</h2>
</h2>
<fieldset class="exp5">
<fieldset class="exp5">
-
     <legend><a name="exp5.1">5.1 Testing Competence and Transformation of DH5Alpha</a></legend>
+
     <legend><a name="exp5.1">5.1 Testing Competence and Transformation of DH5&alpha;</a></legend>
     <div class="exp-content">
     <div class="exp-content">
-
<p>1&micro;l plasmid with a amp-resistence was put on ice for 10min. A heat shock was induced for 45s at 42°C. The sample was put on ice for another 10min and then incubated in 200&micro;l LB for 1h before it was plated onto LB-, ampicilin- and canamycin-plates.</p>
+
<p>1 &micro;L plasmid with a Amp-resistance was put on ice for 10 min. A heat shock was induced for 45 s at 42 &deg;C. The sample was put on ice for another 10 min and then incubated in 200 &micro;L LB for 1 h before it was plated onto LB-, ampicillin- and canamycin-plates.</p>
     </div>
     </div>
</fieldset>
</fieldset>
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     <legend><a name="exp7.1">7.1 <i>E. coli</i> DH5&alpha; with PSG1164: Overnight-cultures</a></legend>
     <legend><a name="exp7.1">7.1 <i>E. coli</i> DH5&alpha; with PSG1164: Overnight-cultures</a></legend>
<div class="exp-content">
<div class="exp-content">
-
<p>50ml LB-medium (with ampicilin) were inoculated with E.coli BL21 PlyS and grown overnight.</p>
+
<p>5 mL LB-medium (with ampicillin) were inoculated with <i>E.coli</i> BL21 pLysS and grown overnight.</p>
     </div>
     </div>
</fieldset>
</fieldset>
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      </tr>
      </tr>
  <tr>
  <tr>
-
    <td>ampicilin-plate</td>
+
    <td>ampicillin-plate</td>
    <td>no growth</td>
    <td>no growth</td>
      </tr>
      </tr>
  <tr>
  <tr>
-
    <td>ampicilin-plate 2</td>
+
    <td>ampicillin-plate 2</td>
-
    <td>trafo successfull growth</td>
+
    <td>trafo successful growth</td>
      </tr>
      </tr>
  </table>
  </table>
 +
<!-- <img src="" alt="" /> -->
     </div>
     </div>
</fieldset>
</fieldset>
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     <legend><a name="exp7.2">7.2 Inoculation</a></legend>
     <legend><a name="exp7.2">7.2 Inoculation</a></legend>
<div class="exp-content">
<div class="exp-content">
-
<p>Inoculation of LB-plates with E.Coli DH5Alpha with PSG1164.</p>
+
<p>Inoculation of LB-plates with <i>E.Coli</i> DH5&alpha; with PSG1164.</p>
     </div>
     </div>
</fieldset>
</fieldset>
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<div class="exp-content">
<div class="exp-content">
     <!-- exp7.4 -->
     <!-- exp7.4 -->
-
     <P>Miniprep according to the miniprep kit protocol (Omega) with 2x6ml preculture.</P>
+
     <P>Miniprep according to the miniprep kit protocol (Omega) with 2x6 mL preculture.</P>
         <p>DNA-concentration:</p>
         <p>DNA-concentration:</p>
         <ul class="miniprep">
         <ul class="miniprep">
-
<li>1. 233,2 ng/&micro;l</li>
+
<li>1. 233,2 ng/&micro;L</li>
-
             <li>2. 261,3 ng/&micro;l</li>
+
             <li>2. 261,3 ng/&micro;L</li>
</ul>
</ul>
     </div>
     </div>
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     <table width="100%" border="1">
     <table width="100%" border="1">
       <tr>
       <tr>
-
         <th scope="col">[&micro;l]</th>
+
         <th scope="col">[&micro;L]</th>
         <th scope="col">PSG1164 - uncut</th>
         <th scope="col">PSG1164 - uncut</th>
-
         <th scope="col">PSG1164 - NcolI (20kU/ml)</th>
+
         <th scope="col">PSG1164 - NcoI (20kU/mL)</th>
         <th scope="col">PSG1164 - EcoRI-HF</th>
         <th scope="col">PSG1164 - EcoRI-HF</th>
         </tr>
         </tr>
       <tr>
       <tr>
         <th scope="row">DNA</th>
         <th scope="row">DNA</th>
-
         <td>261,3 ng/&micro;l<br />
+
         <td>261,3 ng/&micro;L<br />
-
           ca. 1 &micro;g &rarr; 3,5 &micro;l</td>
+
           ca. 1 &micro;g &rarr; 3,5 &micro;L</td>
-
         <td>261,3 ng/&micro;l<br />
+
         <td>261,3 ng/&micro;L<br />
-
     ca. 1 &micro;g &rarr; 3,5 &micro;l</td>
+
     ca. 1 &micro;g &rarr; 3,5 &micro;L</td>
-
         <td>261,3 ng/&micro;l<br />
+
         <td>261,3 ng/&micro;L<br />
-
     ca. 1 &micro;g &rarr; 3,5 &micro;l</td>
+
     ca. 1 &micro;g &rarr; 3,5 &micro;L</td>
         </tr>
         </tr>
       <tr>
       <tr>
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         <td>10x Tango Buffer<br />
         <td>10x Tango Buffer<br />
           1,5</td>
           1,5</td>
-
         <td>10x Cutsmarkt<br />
+
         <td>10x Cutsmart<br />
           1,5</td>
           1,5</td>
         </tr>
         </tr>
       <tr>
       <tr>
-
         <th scope="row">H2O</th>
+
         <th scope="row">H<sub>2</sub>O</th>
         <td>11,5</td>
         <td>11,5</td>
         <td>9,5</td>
         <td>9,5</td>
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         </tr>
         </tr>
     </table>
     </table>
-
<p>Incubate samples for 60 min at 37&deg;C, then induce a heat shock for 2 min at 45&deg;C. 5&micro;l marker and 10&micro;l of the samples are loaded onto the SDS-gel.</p>
+
<p>Incubate samples for 60 min at 37 &deg;C, then induce a heat shock for 2 min at 45 &deg;C. 5 &micro;L marker and 10 &micro;L of the samples are loaded onto a 1% agarose gel.</p>
     </div>
     </div>
<div class="exp-results">
<div class="exp-results">
     <h3>Results:</h3>
     <h3>Results:</h3>
     <!-- exp7.7 -->
     <!-- exp7.7 -->
-
<img src="https://static.igem.org/mediawiki/2014/5/51/2014-03-07_PSG1164.jpg" width="30%" />
+
<img src="https://static.igem.org/mediawiki/2014/3/34/MR_20140327_restriction_pSG1164_NcoI_and_EcoRI.jpg" width="30%" />
 +
<p>The plasmid digested with <i>Nco</i>I showed two bands, what means, it had two restriction sites. pSG1164 digested with <i>Eco</i>RI looked like it was linearized.</p>
     </div>
     </div>
</fieldset>
</fieldset>

Latest revision as of 11:45, 16 October 2014

Notebook: March

17.03.2014

1.1 Overnight Preculture

2x5 mL LB medium were inoculated with 50 µL DH5α, aliquoted for a preculture and incubated overnight (16,5h) at 37 °C.

18.03.2014

1.2 Main Culture

250 mL were inoculated with 5 mL of preculture and incubated until they reached an OD of 0,5. After centrifugation, the cell pellet was washed with HTP buffer and resuspended in 3 mL HTP buffer. In the end, 225 µL DMSO was added to an end concentration of 6-7%. The 50 µL aliquots were frozen in N2(l) and stored at -80 °C.

26.03.2014

5.1 Testing Competence and Transformation of DH5α

1 µL plasmid with a Amp-resistance was put on ice for 10 min. A heat shock was induced for 45 s at 42 °C. The sample was put on ice for another 10 min and then incubated in 200 µL LB for 1 h before it was plated onto LB-, ampicillin- and canamycin-plates.

7.1 E. coli DH5α with PSG1164: Overnight-cultures

5 mL LB-medium (with ampicillin) were inoculated with E.coli BL21 pLysS and grown overnight.

27.03.2014

5.2 Results

Plates from 26.03.2014

LB-plate growth
canamycin-plate no growth
ampicillin-plate no growth
ampicillin-plate 2 trafo successful growth
7.2 Inoculation

Inoculation of LB-plates with E.Coli DH5α with PSG1164.

7.3 Miniprep

Miniprep according to the miniprep kit protocol (Omega) with 2x6 mL preculture.

DNA-concentration:

  • 1. 233,2 ng/µL
  • 2. 261,3 ng/µL
7.5 Test Digestion
Tested enzyme Compatible with Ncol Compatible with Ncol-HF
AvrII 100 100
KpnI / HF 50 50*
ApaI / HF 100 100
XhoI / HF 100 100
SalI / HF 10 10/100
ClaI / HF 100 100
HindIII / HF 50*/100 50/100
EcoRV / HF 10*/100 10/100
EcoRI / HF 50*/100 50*100
PstI / HF 50*/100 50*100
7.6 Digestion of PSG1164

Digestion scheme:

[µL] PSG1164 - uncut PSG1164 - NcoI (20kU/mL) PSG1164 - EcoRI-HF
DNA 261,3 ng/µL
ca. 1 µg → 3,5 µL
261,3 ng/µL
ca. 1 µg → 3,5 µL
261,3 ng/µL
ca. 1 µg → 3,5 µL
Enzyme 1 - Ncol
0,5
-
Enzyme 2 - - EcoRI-HF
0,5
Buffer - 10x Tango Buffer
1,5
10x Cutsmart
1,5
H2O 11,5 9,5 9,5
Total Volume 15 15 15
Loading Dye (6x) 2,5 2,5 2,5

Incubate samples for 60 min at 37 °C, then induce a heat shock for 2 min at 45 °C. 5 µL marker and 10 µL of the samples are loaded onto a 1% agarose gel.

Results:

The plasmid digested with NcoI showed two bands, what means, it had two restriction sites. pSG1164 digested with EcoRI looked like it was linearized.