Team:Marburg:Project:Notebook

From 2014.igem.org

(Difference between revisions)
Line 16: Line 16:
     <legend><a name="exp1.1">1.1 Overnight Preculture</a></legend>
     <legend><a name="exp1.1">1.1 Overnight Preculture</a></legend>
<div class="exp-content">
<div class="exp-content">
-
<p> 2x5 mL LB medium were inoculated with 50 &micro;L DH5&alpha;, aliquoted  for a preculture and incubated overnight (16,5h) at 37&deg;C.</p>
+
<p> 2x5 mL LB medium were inoculated with 50 &micro;L DH5&alpha;, aliquoted  for a preculture and incubated overnight (16,5h) at 37 &deg;C.</p>
     </div>
     </div>
</fieldset>
</fieldset>
Line 31: Line 31:
<div class="exp-content">
<div class="exp-content">
     <!-- exp1.3 -->
     <!-- exp1.3 -->
-
<p>250ml were inoculated with 5ml of preculture and incubated until they reached an OD of 0,5. After centrifugation, the cell pellet was washed with HTP buffer and resuspended in 3ml HTP buffer. In the end, 225&micro;l DMSO was added to an end concenctration of 6-7%. The 50&micro;l aliquots were frozen in N2(l) and stored at -80&deg;C. </p>
+
<p>250 mL were inoculated with 5 mL of preculture and incubated until they reached an OD of 0,5. After centrifugation, the cell pellet was washed with HTP buffer and resuspended in 3ml HTP buffer. In the end, 225 &micro;L DMSO was added to an end concenctration of 6-7%. The 50 &micro;L aliquots were frozen in N2(l) and stored at -80 &deg;C. </p>
</div>
</div>
</fieldset>
</fieldset>
Line 43: Line 43:
</h2>
</h2>
<fieldset class="exp5">
<fieldset class="exp5">
-
     <legend><a name="exp5.1">5.1 Testing Competence and Transformation of DH5Alpha</a></legend>
+
     <legend><a name="exp5.1">5.1 Testing Competence and Transformation of DH5&alpha;</a></legend>
     <div class="exp-content">
     <div class="exp-content">
-
<p>1&micro;l plasmid with a amp-resistence was put on ice for 10min. A heat shock was induced for 45s at 42°C. The sample was put on ice for another 10min and then incubated in 200&micro;l LB for 1h before it was plated onto LB-, ampicilin- and canamycin-plates.</p>
+
<p>1 &micro;L plasmid with a amp-resistence was put on ice for 10 min. A heat shock was induced for 45 s at 42 &deg;C. The sample was put on ice for another 10 min and then incubated in 200 &micro;L LB for 1h before it was plated onto LB-, ampicilin- and canamycin-plates.</p>
     </div>
     </div>
</fieldset>
</fieldset>
Line 52: Line 52:
     <legend><a name="exp7.1">7.1 <i>E. coli</i> DH5&alpha; with PSG1164: Overnight-cultures</a></legend>
     <legend><a name="exp7.1">7.1 <i>E. coli</i> DH5&alpha; with PSG1164: Overnight-cultures</a></legend>
<div class="exp-content">
<div class="exp-content">
-
<p>50ml LB-medium (with ampicilin) were inoculated with E.coli BL21 PlyS and grown overnight.</p>
+
<p>50 mL LB-medium (with ampicilin) were inoculated with <i>E.coli</i> BL21 PlyS and grown overnight.</p>
     </div>
     </div>
</fieldset>
</fieldset>
Line 91: Line 91:
     <legend><a name="exp7.2">7.2 Inoculation</a></legend>
     <legend><a name="exp7.2">7.2 Inoculation</a></legend>
<div class="exp-content">
<div class="exp-content">
-
<p>Inoculation of LB-plates with E.Coli DH5Alpha with PSG1164.</p>
+
<p>Inoculation of LB-plates with <i>E.Coli</i> DH5&alpha; with PSG1164.</p>
     </div>
     </div>
</fieldset>
</fieldset>
Line 98: Line 98:
<div class="exp-content">
<div class="exp-content">
     <!-- exp7.4 -->
     <!-- exp7.4 -->
-
     <P>Miniprep according to the miniprep kit protocol (Omega) with 2x6ml preculture.</P>
+
     <P>Miniprep according to the miniprep kit protocol (Omega) with 2x6 mL preculture.</P>
         <p>DNA-concentration:</p>
         <p>DNA-concentration:</p>
         <ul class="miniprep">
         <ul class="miniprep">
-
<li>1. 233,2 ng/&micro;l</li>
+
<li>1. 233,2 ng/&micro;L</li>
-
             <li>2. 261,3 ng/&micro;l</li>
+
             <li>2. 261,3 ng/&micro;L</li>
</ul>
</ul>
     </div>
     </div>
Line 174: Line 174:
     <table width="100%" border="1">
     <table width="100%" border="1">
       <tr>
       <tr>
-
         <th scope="col">[&micro;l]</th>
+
         <th scope="col">[&micro;L]</th>
         <th scope="col">PSG1164 - uncut</th>
         <th scope="col">PSG1164 - uncut</th>
-
         <th scope="col">PSG1164 - NcolI (20kU/ml)</th>
+
         <th scope="col">PSG1164 - NcolI (20kU/mL)</th>
         <th scope="col">PSG1164 - EcoRI-HF</th>
         <th scope="col">PSG1164 - EcoRI-HF</th>
         </tr>
         </tr>
       <tr>
       <tr>
         <th scope="row">DNA</th>
         <th scope="row">DNA</th>
-
         <td>261,3 ng/&micro;l<br />
+
         <td>261,3 ng/&micro;L<br />
-
           ca. 1 &micro;g &rarr; 3,5 &micro;l</td>
+
           ca. 1 &micro;g &rarr; 3,5 &micro;L</td>
-
         <td>261,3 ng/&micro;l<br />
+
         <td>261,3 ng/&micro;L<br />
-
     ca. 1 &micro;g &rarr; 3,5 &micro;l</td>
+
     ca. 1 &micro;g &rarr; 3,5 &micro;L</td>
-
         <td>261,3 ng/&micro;l<br />
+
         <td>261,3 ng/&micro;L<br />
-
     ca. 1 &micro;g &rarr; 3,5 &micro;l</td>
+
     ca. 1 &micro;g &rarr; 3,5 &micro;L</td>
         </tr>
         </tr>
       <tr>
       <tr>
Line 229: Line 229:
         </tr>
         </tr>
     </table>
     </table>
-
<p>Incubate samples for 60 min at 37&deg;C, then induce a heat shock for 2 min at 45&deg;C. 5&micro;l marker and 10&micro;l of the samples are loaded onto the SDS-gel.</p>
+
<p>Incubate samples for 60 min at 37 &deg;C, then induce a heat shock for 2 min at 45 &deg;C. 5 &micro;L marker and 10 &micro;L of the samples are loaded onto the SDS-gel.</p>
     </div>
     </div>
<div class="exp-results">
<div class="exp-results">

Revision as of 15:38, 13 October 2014

Notebook: March

17.03.2014

1.1 Overnight Preculture

2x5 mL LB medium were inoculated with 50 µL DH5α, aliquoted for a preculture and incubated overnight (16,5h) at 37 °C.

18.03.2014

1.2 Main Culture

250 mL were inoculated with 5 mL of preculture and incubated until they reached an OD of 0,5. After centrifugation, the cell pellet was washed with HTP buffer and resuspended in 3ml HTP buffer. In the end, 225 µL DMSO was added to an end concenctration of 6-7%. The 50 µL aliquots were frozen in N2(l) and stored at -80 °C.

26.03.2014

5.1 Testing Competence and Transformation of DH5α

1 µL plasmid with a amp-resistence was put on ice for 10 min. A heat shock was induced for 45 s at 42 °C. The sample was put on ice for another 10 min and then incubated in 200 µL LB for 1h before it was plated onto LB-, ampicilin- and canamycin-plates.

7.1 E. coli DH5α with PSG1164: Overnight-cultures

50 mL LB-medium (with ampicilin) were inoculated with E.coli BL21 PlyS and grown overnight.

27.03.2014

5.2 Results

Plates from 26.03.2014

LB-plate growth
canamycin-plate no growth
ampicilin-plate no growth
ampicilin-plate 2 trafo successfull growth
7.2 Inoculation

Inoculation of LB-plates with E.Coli DH5α with PSG1164.

7.3 Miniprep

Miniprep according to the miniprep kit protocol (Omega) with 2x6 mL preculture.

DNA-concentration:

  • 1. 233,2 ng/µL
  • 2. 261,3 ng/µL
7.5 Test Digestion
Tested enzyme Compatible with Ncol Compatible with Ncol-HF
AvrII 100 100
KpnI / HF 50 50*
ApaI / HF 100 100
XhoI / HF 100 100
SalI / HF 10 10/100
ClaI / HF 100 100
HindIII / HF 50*/100 50/100
EcoRV / HF 10*/100 10/100
EcoRI / HF 50*/100 50*100
PstI / HF 50*/100 50*100
7.6 Digestion of PSG1164

Digestion scheme:

[µL] PSG1164 - uncut PSG1164 - NcolI (20kU/mL) PSG1164 - EcoRI-HF
DNA 261,3 ng/µL
ca. 1 µg → 3,5 µL
261,3 ng/µL
ca. 1 µg → 3,5 µL
261,3 ng/µL
ca. 1 µg → 3,5 µL
Enzyme 1 - Ncol
0,5
-
Enzyme 2 - - EcoRI-HF
0,5
Buffer - 10x Tango Buffer
1,5
10x Cutsmarkt
1,5
H2O 11,5 9,5 9,5
Total Volume 15 15 15
Loading Dye (6x) 2,5 2,5 2,5

Incubate samples for 60 min at 37 °C, then induce a heat shock for 2 min at 45 °C. 5 µL marker and 10 µL of the samples are loaded onto the SDS-gel.

Results: