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Team:ITB Indonesia/ProteinModel
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| - | <div id="putih"> | + | <div id="putih"> <div id="logo-igem" onclick="window.location.href='https://2014.igem.org/'"></div> |
<div id="center"> | <div id="center"> | ||
<div id="logo"></div> | <div id="logo"></div> | ||
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<li><a href="https://2014.igem.org/Team:ITB_Indonesia/RepMod">REPORTER MODULE</a></li> | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/RepMod">REPORTER MODULE</a></li> | ||
<li><a href="https://2014.igem.org/Team:ITB_Indonesia/SelfMod">SELF REGULATORY MODULE</a></li> | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/SelfMod">SELF REGULATORY MODULE</a></li> | ||
| + | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/FutureSystem">FUTURE SYSTEM</a></li> | ||
</ul> | </ul> | ||
</li> | </li> | ||
| - | <li>MODELING</li> | + | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/Modeling">MODELING</a></li> |
<li>WETLAB | <li>WETLAB | ||
<ul> | <ul> | ||
| - | <li><a href="">PARTS</a></li> | + | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/protocol">PROTOCOL</a></li> |
| - | <li><a href="">ATTRIBUTIONS</a></li> | + | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/Parts">PARTS</a></li> |
| + | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/Attributions">ATTRIBUTIONS</a></li> | ||
<li><a href="https://2014.igem.org/Team:ITB_Indonesia/Safety">SAFETY</a></li> | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/Safety">SAFETY</a></li> | ||
| - | <li><a href="">DATA</a></li> | + | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/Data">DATA</a></li> |
| - | <li><a href="">PROTEIN MODEL</a></li> | + | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/ProteinModel">PROTEIN MODEL</a></li> |
| - | <li><a href="">ACHIEVEMENT</a></li> | + | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/Achievement">ACHIEVEMENT</a></li> |
</ul> | </ul> | ||
</li> | </li> | ||
<li>NOTEBOOK | <li>NOTEBOOK | ||
<ul> | <ul> | ||
| - | + | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/nb-wetlab">WETLAB</a></li> | |
| - | <li><a href="https://igem.org/Team | + | |
</ul> | </ul> | ||
</li> | </li> | ||
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<li><a href="https://2014.igem.org/Team:ITB_Indonesia/OnMedia">MEDIA</a></li> | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/OnMedia">MEDIA</a></li> | ||
<li><a href="https://2014.igem.org/Team:ITB_Indonesia/Biosafety">BIOSAFETY SEMINAR</a></li> | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/Biosafety">BIOSAFETY SEMINAR</a></li> | ||
| - | <li><a href="">INDONESIA TEAMS MEET UP</a></li> | + | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/MeetUp">INDONESIA TEAMS MEET UP</a></li> |
| - | <li><a href="">FUN WITH KIDS</a></li> | + | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/Kids">FUN WITH KIDS</a></li> |
| - | <li><a href="">SHARING SYNBIO IN UPI</a></li> | + | <li><a href="https://2014.igem.org/Team:ITB_Indonesia/UPI">SHARING SYNBIO IN UPI</a></li> |
</ul> | </ul> | ||
</li> | </li> | ||
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<h1>Protein Modeling</h1> | <h1>Protein Modeling</h1> | ||
<p>The SWISS-MODEL Repository is a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL. The Repository currently contains about 300.000 three-dimensional models for sequences from the Swiss-Prot and TrEMBL databases. Figure 1 shown the protein model of our oMPA-LcCutinase. Figure 2 shown the detail Swiss model summary</p> | <p>The SWISS-MODEL Repository is a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL. The Repository currently contains about 300.000 three-dimensional models for sequences from the Swiss-Prot and TrEMBL databases. Figure 1 shown the protein model of our oMPA-LcCutinase. Figure 2 shown the detail Swiss model summary</p> | ||
| + | <br> | ||
<img src="https://static.igem.org/mediawiki/2014/9/95/Promod1.JPG"> | <img src="https://static.igem.org/mediawiki/2014/9/95/Promod1.JPG"> | ||
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<br> | <br> | ||
<img src="https://static.igem.org/mediawiki/2014/d/d2/Promod2.JPG"> | <img src="https://static.igem.org/mediawiki/2014/d/d2/Promod2.JPG"> | ||
<img src="https://static.igem.org/mediawiki/2014/0/02/Promod3.JPG"> | <img src="https://static.igem.org/mediawiki/2014/0/02/Promod3.JPG"> | ||
| + | <br> | ||
<br> | <br> | ||
| - | <h3> | + | <h3>References</h3> |
<ol style="text-decoration:none;"> | <ol style="text-decoration:none;"> | ||
<li>Schwede T, Kopp J, Guex N, and Peitsch MC (2003) SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Research 31: 3381-3385.</li> | <li>Schwede T, Kopp J, Guex N, and Peitsch MC (2003) SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Research 31: 3381-3385.</li> | ||
Latest revision as of 12:22, 16 October 2014
Protein Modeling
The SWISS-MODEL Repository is a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL. The Repository currently contains about 300.000 three-dimensional models for sequences from the Swiss-Prot and TrEMBL databases. Figure 1 shown the protein model of our oMPA-LcCutinase. Figure 2 shown the detail Swiss model summary
References
- Schwede T, Kopp J, Guex N, and Peitsch MC (2003) SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Research 31: 3381-3385.
- Sulaiman, Sintawee, Saya Yamat, Eiko Kanaya, Joong-Jae Kim, Yuichi Koga, Kazufumi Takano and Shigenori Kanaya. 2012. Isolation of a Novel Cutinase Homolog with Polyethylene Terephthalate-Degrading Activity from Leaf-Branch Compost by Using a Metagenomic Approach. Applied and Environmental Microbiology p 1556-1562.
