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Team:Goettingen/notebook drylab
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| + | <p>We're trying to model the tridimensional structure of our peptide-containing scaffolds (domain B1 from protein G from <i>Streptococcus aureus</i>). We're using homology modelling with the <a href="https://salilab.org/modeller/tutorial/basic.html">Modeller library</a> to accomplish that, since the peptide is about 25-25 amino acid residues long and it can be modelled as a loop inside the B1 domain scaffold, for which there are already a number of 3D structures available at the Protein Data Bank.</p> | ||
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Revision as of 11:15, 21 August 2014
Homology modelling
We're trying to model the tridimensional structure of our peptide-containing scaffolds (domain B1 from protein G from Streptococcus aureus). We're using homology modelling with the Modeller library to accomplish that, since the peptide is about 25-25 amino acid residues long and it can be modelled as a loop inside the B1 domain scaffold, for which there are already a number of 3D structures available at the Protein Data Bank.
