Team:Evry/Notebook/Transposons/15.10.14

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== 14.10.2014 ligation==
 
 +
<h4> 14.10.2014 ligation </h4>
 +
<br><br><p>
it gave only one clone.  
it gave only one clone.  
-
 
+
<br><br>
Clone culture:
Clone culture:
-
5 ml LB + 5 ul Kan (25 mg/ml) - 37 C°
+
<br>5 ml LB + 5 ul Kan (25 mg/ml) - 37 C°
-
 
+
<br><br></p>
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== Transformation <i>Pseudovibrio denitrificans</i> & Dh5 alpha with mRFP in BBa_1413044==
+
 +
<h4> Transformation <i>Pseudovibrio denitrificans</i> & Dh5 alpha with mRFP in BBa_1413044 </h4>
 +
<br><br><p>
electrocompetent cells:
electrocompetent cells:
-
 
+
<br><br>
1 mm cuvette; 1800 V
1 mm cuvette; 1800 V
-
recuperation media: MB for <i>Pseudovibrio denitrificans</i> , LB for DH5alpha
+
<br>recuperation media: MB for <i>Pseudovibrio denitrificans</i> , LB for DH5alpha
-
 
+
<br><br>
plating:
plating:
-
 
+
<br><br>
MB agar for <i>Pseudovibrio denitrificans</i>
MB agar for <i>Pseudovibrio denitrificans</i>
-
LB agar for LB for DH5alpha
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<br>LB agar for LB for DH5alpha
-
 
+
<br><br></p>
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<img src="" width="50%"/>
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<h4> Transformation <i>Pseudovibrio denitrificans</i> & Dh5 alpha with BBa_1413001 in BBa_1413044 </h4>
-
 
+
<br><br><p>
-
 
+
-
== Transformation <i>Pseudovibrio denitrificans</i> & Dh5 alpha with BBa_1413001 in BBa_1413044==
+
-
 
+
electrocompetent cells:
electrocompetent cells:
-
 
+
<br><br>
1 mm cuvette; 1800 V
1 mm cuvette; 1800 V
-
recuperation media: MB for <i>Pseudovibrio denitrificans</i> , LB for DH5alpha
+
<br>recuperation media: MB for <i>Pseudovibrio denitrificans</i> , LB for DH5alpha
-
 
+
<br><br>
-
plating:
+
<br>plating:
-
 
+
<br><br>
MB agar for <i>Pseudovibrio denitrificans</i>
MB agar for <i>Pseudovibrio denitrificans</i>
-
LB agar for LB for DH5alpha
+
<br>LB agar for LB for DH5alpha
-
 
+
<br><br></p>
 +
<div align="center">
<img src="" width="50%"/>
<img src="" width="50%"/>
-
 
+
</div>
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== Verification testing of pnK2 in <i>Pseudovibrio denitrificans</i>  
+
<br><br>
-
 
+
<h4> Verification testing of pnK2 in <i>Pseudovibrio denitrificans</i> </h4>
 +
<br><br><p>
16  clones of <i>Pseudovibrio denitrificans</i> were grown in 3 ml MB, 30 C°, 24h
16  clones of <i>Pseudovibrio denitrificans</i> were grown in 3 ml MB, 30 C°, 24h
-
 
+
<br><br>
DNA extraction:
DNA extraction:
-
 
+
<br><br>
Invitrogen DNA extraction kit used with the Gram - protocol.
Invitrogen DNA extraction kit used with the Gram - protocol.
-
nanodrops gave value between 80 ng/ul & 130 ng/ul
+
<br>nanodrops gave value between 80 ng/ul & 130 ng/ul
-
 
+
<br><br>
PCR for Kan gene insertion:
PCR for Kan gene insertion:
-
PCR: enzyme: Q5; template: 200 ng genomic preparation <i>Pseudovibrio denitrificans</i>; oligo: F 82/ R 83; Tm tested: 55; elongation time: 2m00s
+
<br>PCR: enzyme: Q5; template: 200 ng genomic preparation <i>Pseudovibrio denitrificans</i>; oligo: F 82/ R 83; Tm tested: 55; elongation time: 2m00s
-
<img src="https://static.igem.org/mediawiki/2014/9/90/Evry_Kan_extract.JPG" width="50%"/>
+
<br><br></p>
-
 
+
<div align="center"><img src="https://static.igem.org/mediawiki/2014/6/6c/Kan.JPG" width="50%"/></div>
 +
<br><br><p>
PCR for <i>Pseudovibrio denitrificans</i> specific oligo:
PCR for <i>Pseudovibrio denitrificans</i> specific oligo:
-
PCR: enzyme: Q5; template: 200 ng genomic preparation <i>Pseudovibrio denitrificans</i>; oligo: F 72/ R 73; Tm tested: 55; elongation time: 2m00s
+
<br>PCR: enzyme: Q5; template: 200 ng genomic preparation <i>Pseudovibrio denitrificans</i>; oligo: F 72/ R 73; Tm tested: 55; elongation time: 2m00s
-
<img src="https://static.igem.org/mediawiki/2014/e/e7/Evry_Pseudo_spe.JPG" width="50%"/>
+
<br><br></p>
 +
<div align="center"><img src="https://static.igem.org/mediawiki/2014/e/e7/Evry_Pseudo_spe.JPG" width="50%"/></div>
 +
<br><br><p>
 +
As a control we tested the specificity of our oligo on the strain we work with:
 +
<br><div align="center"><img src="https://static.igem.org/mediawiki/2014/0/0b/Pseudo_spe.JPG"width="50%"/></div>
 +
<br></p>
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</p>
 
<span class="cd-date">Oct 15</span>  
<span class="cd-date">Oct 15</span>  
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Latest revision as of 23:01, 17 October 2014

Picture

14.10.2014 ligation



it gave only one clone.

Clone culture:
5 ml LB + 5 ul Kan (25 mg/ml) - 37 C°

Transformation Pseudovibrio denitrificans & Dh5 alpha with mRFP in BBa_1413044



electrocompetent cells:

1 mm cuvette; 1800 V
recuperation media: MB for Pseudovibrio denitrificans , LB for DH5alpha

plating:

MB agar for Pseudovibrio denitrificans
LB agar for LB for DH5alpha

Transformation Pseudovibrio denitrificans & Dh5 alpha with BBa_1413001 in BBa_1413044



electrocompetent cells:

1 mm cuvette; 1800 V
recuperation media: MB for Pseudovibrio denitrificans , LB for DH5alpha


plating:

MB agar for Pseudovibrio denitrificans
LB agar for LB for DH5alpha



Verification testing of pnK2 in Pseudovibrio denitrificans



16 clones of Pseudovibrio denitrificans were grown in 3 ml MB, 30 C°, 24h

DNA extraction:

Invitrogen DNA extraction kit used with the Gram - protocol.
nanodrops gave value between 80 ng/ul & 130 ng/ul

PCR for Kan gene insertion:
PCR: enzyme: Q5; template: 200 ng genomic preparation Pseudovibrio denitrificans; oligo: F 82/ R 83; Tm tested: 55; elongation time: 2m00s



PCR for Pseudovibrio denitrificans specific oligo:
PCR: enzyme: Q5; template: 200 ng genomic preparation Pseudovibrio denitrificans; oligo: F 72/ R 73; Tm tested: 55; elongation time: 2m00s



As a control we tested the specificity of our oligo on the strain we work with:


Oct 15