Team:ETH Zurich/modeling/parameters

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|k<sub>-RLux</sub>||10 min<sup>-1</sup>||Dissociation rate of RLux ||Literature <sup>[[Team:ETH_Zurich/project/references|[19]]]</sup>
|k<sub>-RLux</sub>||10 min<sup>-1</sup>||Dissociation rate of RLux ||Literature <sup>[[Team:ETH_Zurich/project/references|[19]]]</sup>
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|K<sub>mLux</sub>||10 nM||Lumped parameter for the Lux system|| [https://2014.igem.org/Team:ETH_Zurich/modeling/qs Fitted to experimental data]
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|K<sub>mLux</sub>||10 nM||Lumped parameter for the Lux system|| [https://2014.igem.org/Team:ETH_Zurich/modeling/qs#Parameters Fitted to experimental data]
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|d<sub>LuxAHL</sub>||0.004 min<sup>-1</sup>||External degradation rate of LuxAHL (30C6HSL)||[https://2014.igem.org/Team:ETH_Zurich/modeling/qs#Parameters Fitted to experimental data]
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|d<sub>LuxAHL</sub>||0.004 min<sup>-1</sup>||External degradation rate of LuxAHL (30C6HSL)||[https://2014.igem.org/Team:ETH_Zurich/modeling/qs#Degradation Fitted to experimental data]
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|d<sub>LuxR</sub>||0.0231 min<sup>-1</sup>||Degradation rate of LuxR||Literature <sup>[[Team:ETH_Zurich/project/references|[21]]]</sup>
|d<sub>LuxR</sub>||0.0231 min<sup>-1</sup>||Degradation rate of LuxR||Literature <sup>[[Team:ETH_Zurich/project/references|[21]]]</sup>
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|α<sub>LasR</sub>||0.005 μMmin<sup>-1</sup>||Production rate of LasR||Literature <sup>[[Team:ETH_Zurich/project/references|[20]]]</sup>(Assumed to be the same as Lux system)
|α<sub>LasR</sub>||0.005 μMmin<sup>-1</sup>||Production rate of LasR||Literature <sup>[[Team:ETH_Zurich/project/references|[20]]]</sup>(Assumed to be the same as Lux system)
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|k<sub>RLas</sub>||0.1 nM<sup>-1</sup>min<sup>-1</sup>|| Rate of formation of RLas from LasAHL and LasR||Literature <sup>[[Team:ETH_Zurich/project/references|[19]]]</sup>(Assumed to be the same as Lux system)
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|k<sub>RLas</sub>||0.1 nM<sup>-1</sup>min<sup>-1</sup>|| Rate of formation of RLas from LasAHL and LasR||Literature <sup>[[Team:ETH_Zurich/project/references|[19]]]</sup> (Assumed to be the same as Lux system)
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|k<sub>-RLas</sub>||10 min<sup>-1</sup>||Dissociation rate of RLas ||Literature  <sup>[[Team:ETH_Zurich/project/references|[19]]]</sup>(Assumed to be the same as Lux system)
|k<sub>-RLas</sub>||10 min<sup>-1</sup>||Dissociation rate of RLas ||Literature  <sup>[[Team:ETH_Zurich/project/references|[19]]]</sup>(Assumed to be the same as Lux system)
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|K<sub>mLas</sub>||0.45 nM||Lumped parameter for the Las system ||[https://2014.igem.org/Team:ETH_Zurich/modeling/qs Fitted to experimental data]
|K<sub>mLas</sub>||0.45 nM||Lumped parameter for the Las system ||[https://2014.igem.org/Team:ETH_Zurich/modeling/qs Fitted to experimental data]
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|d<sub>LasAHL</sub>||0.004 min<sup>-1</sup>||Degradation rate of LasAHL (30C12HSL)||Fitted to experimental data
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|d<sub>LasAHL</sub>||0.004 min<sup>-1</sup>||Degradation rate of LasAHL (30C12HSL)||Estimated
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|d<sub>LasR</sub>||0.0231 min<sup>-1</sup>||Degradation rate of LasR||Literature <sup>[[Team:ETH_Zurich/project/references|[21]]]</sup> (Assumed to be the same as Lux system)
|d<sub>LasR</sub>||0.0231 min<sup>-1</sup>||Degradation rate of LasR||Literature <sup>[[Team:ETH_Zurich/project/references|[21]]]</sup> (Assumed to be the same as Lux system)
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|d<sub>mRNAGFP</sub>||0.2773 min<sup>-1</sup>||Degradation rate of mRNA<sub>GFP</sub>||Literature <sup>[[Team:ETH_Zurich/project/references|[22]]]</sup>
|d<sub>mRNAGFP</sub>||0.2773 min<sup>-1</sup>||Degradation rate of mRNA<sub>GFP</sub>||Literature <sup>[[Team:ETH_Zurich/project/references|[22]]]</sup>
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|d<sub>GFP</sub>||0.0049 min<sup>-1</sup>||Degradation rate of GFP||Fitted to experimental data
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|d<sub>GFP</sub>||0.0049 min<sup>-1</sup>||Degradation rate of GFP||[https://2014.igem.org/Team:ETH_Zurich/modeling/qs#Retrieving_degradation_rates Fitted to experimental data]
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|k<sub>mRNALasI</sub>||5 nMmin<sup>-1</sup>||Production rate of mRNA<sub>LasI</sub>||Estimated
|k<sub>mRNALasI</sub>||5 nMmin<sup>-1</sup>||Production rate of mRNA<sub>LasI</sub>||Estimated

Latest revision as of 03:39, 18 October 2014

iGEM ETH Zurich 2014