Team:ETH Zurich/data

From 2014.igem.org

(Difference between revisions)
(Characterized New Parts)
(Used and Characterized Pre-Existing Parts)
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==Used and Characterized Pre-Existing Parts==
==Used and Characterized Pre-Existing Parts==
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#[http://parts.igem.org/Part:BBa_R0062:Experience Experience] - '''Promoter (LuxR & 3OC6-HSL regulated), BBa_R0062:''' the promoter's EC<sub>50</sub> could be shown to be dependent on the amount of regulator [http://parts.igem.org/Part:BBa_C0062:Experience LuxR (BBa_C0062)] in the system by using the three different constitutive promoters [http://parts.igem.org/Part:BBa_J23100:Experience BBa_J23100], [http://parts.igem.org/Part:BBa_J23109:Experience BBa_J23109], and [http://parts.igem.org/Part:BBa_J23111:Experience BBa_J23111] for the production of LuxR. The amount of regulator also demonstrated an influence on the promoter's basal expression or leakiness. Additionally, it could be determined that the promoter can also be activated by the regulators [http://parts.igem.org/Part:BBa_C0179:Experience LasR (BBa_C0179)] and [http://parts.igem.org/Part:BBa_C0171:Experience RhlR (C0171)] thus showing crosstalk with these two quorum sensing systems. <html><br><br></html>
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#[http://parts.igem.org/Part:BBa_R0062:Experience Experience] - '''Promoter (LuxR/3OC6-HSL regulated), BBa_R0062:''' the promoter's EC<sub>50</sub> could be shown to be dependent on the amount of regulator [http://parts.igem.org/Part:BBa_C0062:Experience LuxR (BBa_C0062)] in the system by using the three different constitutive promoters [http://parts.igem.org/Part:BBa_J23100:Experience BBa_J23100], [http://parts.igem.org/Part:BBa_J23109:Experience BBa_J23109], and [http://parts.igem.org/Part:BBa_J23111:Experience BBa_J23111] for the production of LuxR. The amount of regulator also demonstrated an influence on the promoter's basal expression or leakiness. Additionally, it could be determined that the promoter can also be activated by the regulators [http://parts.igem.org/Part:BBa_C0179:Experience LasR (BBa_C0179)] and [http://parts.igem.org/Part:BBa_C0171:Experience RhlR (C0171)] thus showing crosstalk with these two quorum sensing systems. <html><br><br></html>
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#[http://parts.igem.org/Part:BBa_R0079:Experience Experience] - '''Promoter (LasR & 3OC12-HSL regulated), BBa_R0079:''' it could be shown that this promoter, which is usually activated by the regulator [http://parts.igem.org/Part:BBa_C0179:Experience LasR (BBa_C0179)] can also be activated by the regulators [http://parts.igem.org/Part:BBa_C0062:Experience LuxR (BBa_C0062)] and [http://parts.igem.org/Part:BBa_C0171:Experience RhlR (C0171)]. Therefore, it shows crosstalk with these two quorum sensing systems.<html><br><br></html>
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#[http://parts.igem.org/Part:BBa_R0079:Experience Experience] - '''Promoter (LasR/3OC12-HSL regulated), BBa_R0079:''' it could be shown that this promoter, which is usually activated by the regulator [http://parts.igem.org/Part:BBa_C0179:Experience LasR (BBa_C0179)] can also be activated by the regulators [http://parts.igem.org/Part:BBa_C0062:Experience LuxR (BBa_C0062)] and [http://parts.igem.org/Part:BBa_C0171:Experience RhlR (C0171)]. Therefore, it shows crosstalk with these two quorum sensing systems.<html><br><br></html>
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#[http://parts.igem.org/Part:BBa_R0071:Experience Experience] - '''Promoter (RhlR & C4-HSL regulated), BBa_R0071:''' the amount of regulator [http://parts.igem.org/Part:BBa_C0171:Experience RhlR (C0171)] demonstrated an influence on the promoter's basal expression or leakiness as well as on the steepness of the response. This was investigated using two different RBSes controlling the expression level of RhlR, i.e. the RBS [http://parts.igem.org/Part:BBa_B0034 B0034] and a RBS optimized for ''rhlR'' using the [http://salis.psu.edu/software/RBSLibraryCalculatorSearchMode Salis Lab RBS Calculator]<sup>[[Team:ETH_Zurich/project/references#refSalis|[13]]]</sup>.<html><br><br></html>
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#[http://parts.igem.org/Part:BBa_R0071:Experience Experience] - '''Promoter (RhlR/C4-HSL regulated), BBa_R0071:''' the amount of regulator [http://parts.igem.org/Part:BBa_C0171:Experience RhlR (C0171)] demonstrated an influence on the promoter's basal expression or leakiness as well as on the steepness of the response. This was investigated using two different RBSes controlling the expression level of RhlR, i.e. the RBS [http://parts.igem.org/Part:BBa_B0034 B0034] and a RBS optimized for ''rhlR'' using the [http://salis.psu.edu/software/RBSLibraryCalculatorSearchMode Salis Lab RBS Calculator]<sup>[[Team:ETH_Zurich/project/references#refSalis|[13]]]</sup>.<html><br><br></html>
#[http://parts.igem.org/Part:BBa_C0062:Experience Experience] - '''Regulator LuxR, BBa_R0062:''' it could be shown, that the regulator LuxR not only activates the promoter [http://parts.igem.org/Part:BBa_R0062 BBa_R0062] together with 3CO6-HSL (the product of the enzyme [http://parts.igem.org/Part:BBa_C0161 LuxI (BBa_C0161)]), but also with 3CO12-HSL ([http://parts.igem.org/Part:BBa_C0178 LasI (BBa_C0178)] product) and C4-HSL ([http://parts.igem.org/Part:BBa_C0170 RhlI (BBa_C0170)] product).<html><br><br></html>
#[http://parts.igem.org/Part:BBa_C0062:Experience Experience] - '''Regulator LuxR, BBa_R0062:''' it could be shown, that the regulator LuxR not only activates the promoter [http://parts.igem.org/Part:BBa_R0062 BBa_R0062] together with 3CO6-HSL (the product of the enzyme [http://parts.igem.org/Part:BBa_C0161 LuxI (BBa_C0161)]), but also with 3CO12-HSL ([http://parts.igem.org/Part:BBa_C0178 LasI (BBa_C0178)] product) and C4-HSL ([http://parts.igem.org/Part:BBa_C0170 RhlI (BBa_C0170)] product).<html><br><br></html>
#[http://parts.igem.org/Part:BBa_C0179:Experience Experience] - '''Regulator LasR, BBa_C0179:''' it could be shown, that the regulator LasR activates the promoter [http://parts.igem.org/Part:BBa_R0079 BBa_R0079] mainly together with 3CO12-HSL (the product of the enzyme [http://parts.igem.org/Part:BBa_C0178 LasI (BBa_C0178)]) and only to a minor extend with 3CO6-HSL ([http://parts.igem.org/Part:BBa_C0161 LuxI (BBa_C0161)] product) and C4-HSL ([http://parts.igem.org/Part:BBa_C0170 RhlI (BBa_C0170)] product).<html><br><br></html>
#[http://parts.igem.org/Part:BBa_C0179:Experience Experience] - '''Regulator LasR, BBa_C0179:''' it could be shown, that the regulator LasR activates the promoter [http://parts.igem.org/Part:BBa_R0079 BBa_R0079] mainly together with 3CO12-HSL (the product of the enzyme [http://parts.igem.org/Part:BBa_C0178 LasI (BBa_C0178)]) and only to a minor extend with 3CO6-HSL ([http://parts.igem.org/Part:BBa_C0161 LuxI (BBa_C0161)] product) and C4-HSL ([http://parts.igem.org/Part:BBa_C0170 RhlI (BBa_C0170)] product).<html><br><br></html>

Revision as of 21:57, 12 October 2014

iGEM ETH Zurich 2014