http://2014.igem.org/wiki/index.php?title=Team:ETH_Zurich/achievements&feed=atom&action=historyTeam:ETH Zurich/achievements - Revision history2024-03-28T21:37:07ZRevision history for this page on the wikiMediaWiki 1.16.5http://2014.igem.org/wiki/index.php?title=Team:ETH_Zurich/achievements&diff=395365&oldid=prevLnadine: /* Lab */2014-10-18T03:16:55Z<p><span class="autocomment">Lab</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 03:16, 18 October 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 41:</td>
<td colspan="2" class="diff-lineno">Line 41:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br clear="all" /></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br clear="all" /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Modeling ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Modeling ==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/int Integrase theoretical characterization] ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/int Integrase theoretical characterization] ===</div></td></tr>
</table>Lnadinehttp://2014.igem.org/wiki/index.php?title=Team:ETH_Zurich/achievements&diff=383994&oldid=prevLuwidmer at 01:43, 18 October 20142014-10-18T01:43:20Z<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 01:43, 18 October 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 2:</td>
<td colspan="2" class="diff-lineno">Line 2:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><html><article></html></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><html><article></html></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>'''We have achieved many of the goals we planned at the beginning of our project. These achievements are well distributed between [[Team:ETH_Zurich/expresults|experimental results]], [[Team:ETH_Zurich/modeling/overview|theoretical work]] and [[Team:ETH_Zurich/human/overview|human reflection and socialisation]]. As a [[Team:ETH_Zurich/team|team of seven students]], we all contributed to all achievements and this <del class="diffchange diffchange-inline">is why everyone of us can feel the fruitfulness of </del>such a <del class="diffchange diffchange-inline">wide </del>project. '''</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>'''We have achieved many of the goals we planned at the beginning of our project. These achievements are well distributed between [[Team:ETH_Zurich/expresults|experimental results]], [[Team:ETH_Zurich/modeling/overview|theoretical work]] and [[Team:ETH_Zurich/human/overview|human reflection and socialisation]]. As a [[Team:ETH_Zurich/team|team of seven students]], we all contributed to all achievements<ins class="diffchange diffchange-inline">, </ins>and <ins class="diffchange diffchange-inline">are quite happy that we got </ins>this <ins class="diffchange diffchange-inline">far on </ins>such a <ins class="diffchange diffchange-inline">diverse </ins>project. '''</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>
</table>Luwidmerhttp://2014.igem.org/wiki/index.php?title=Team:ETH_Zurich/achievements&diff=383618&oldid=prevLuwidmer: /* Successful collaboration with Colombia, Helsinki and Edinburgh iGEM teams */2014-10-18T01:40:02Z<p><span class="autocomment">Successful collaboration with Colombia, Helsinki and Edinburgh iGEM teams</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 01:40, 18 October 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 83:</td>
<td colspan="2" class="diff-lineno">Line 83:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>{| style="margin:auto"</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>{| style="margin:auto<ins class="diffchange diffchange-inline">; width: auto;</ins>"</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>|[[File:Logocolombiaigem.jpg|x150px|link=https://2014.igem.org/Team:ETH_Zurich/collaborations]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">|style="padding:20px;"</ins>|[[File:Logocolombiaigem.jpg|x150px|link=https://2014.igem.org/Team:ETH_Zurich/collaborations]]</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>|[[File:ETH_Zurich_helsinki.png|x150px|link=https://2014.igem.org/Team:ETH_Zurich/collaborations]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">|style="padding:20px;"</ins>|[[File:ETH_Zurich_helsinki.png|x150px|link=https://2014.igem.org/Team:ETH_Zurich/collaborations]]</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>|[[File:Ed14_logo.png|x150px|link=https://2014.igem.org/Team:ETH_Zurich/collaborations]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">|style="padding:20px;"</ins>|[[File:Ed14_logo.png|x150px|link=https://2014.igem.org/Team:ETH_Zurich/collaborations]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|}</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><html></article></html></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><html></article></html></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{:Team:ETH_Zurich/tpl/foot}}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{:Team:ETH_Zurich/tpl/foot}}</div></td></tr>
</table>Luwidmerhttp://2014.igem.org/wiki/index.php?title=Team:ETH_Zurich/achievements&diff=383533&oldid=prevLuwidmer: /* Successful collaboration with Colombia, Helsinki and Edinburgh iGEM teams */2014-10-18T01:39:18Z<p><span class="autocomment">Successful collaboration with Colombia, Helsinki and Edinburgh iGEM teams</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 01:39, 18 October 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 83:</td>
<td colspan="2" class="diff-lineno">Line 83:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>{| <del class="diffchange diffchange-inline">width="auto" </del>style="margin:auto"</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>{| <ins class="diffchange diffchange-inline"> </ins>style="margin:auto"</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[File:Logocolombiaigem.jpg|x150px|link=https://2014.igem.org/Team:ETH_Zurich/collaborations]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[File:Logocolombiaigem.jpg|x150px|link=https://2014.igem.org/Team:ETH_Zurich/collaborations]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[File:ETH_Zurich_helsinki.png|x150px|link=https://2014.igem.org/Team:ETH_Zurich/collaborations]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[File:ETH_Zurich_helsinki.png|x150px|link=https://2014.igem.org/Team:ETH_Zurich/collaborations]]</div></td></tr>
</table>Luwidmerhttp://2014.igem.org/wiki/index.php?title=Team:ETH_Zurich/achievements&diff=383433&oldid=prevLuwidmer: /* Human Practice */2014-10-18T01:38:21Z<p><span class="autocomment">Human Practice</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 01:38, 18 October 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 65:</td>
<td colspan="2" class="diff-lineno">Line 65:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[File:ETH_Zurich_Hpbuttons.png|300px|link=https://2014.igem.org/Team:ETH_Zurich/human/overview]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[File:ETH_Zurich_Hpbuttons.png|300px<ins class="diffchange diffchange-inline">|left</ins>|link=https://2014.igem.org/Team:ETH_Zurich/human/overview]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/human/overview Detailed investigation on the question of complexity through seven interviews of experts, a survey and our own reflections] ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/human/overview Detailed investigation on the question of complexity through seven interviews of experts, a survey and our own reflections] ===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>We conducted a deep study of complexity, how it emerges, and how we should deal with it. By [https://2014.igem.org/Team:ETH_Zurich/human/interviews interviewing experts] from different fields and by listening to the public with a [https://2014.igem.org/Team:ETH_Zurich/human/survey survey], we have broaden our views. Our own biological project also raised questions on this subject and we finally integrated everything that we learnt in [https://2014.igem.org/Team:ETH_Zurich/human/essay a reflection of our own].</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>We conducted a deep study of complexity, how it emerges, and how we should deal with it. By [https://2014.igem.org/Team:ETH_Zurich/human/interviews interviewing experts] from different fields and by listening to the public with a [https://2014.igem.org/Team:ETH_Zurich/human/survey survey], we have broaden our views. Our own biological project also raised questions on this subject and we finally integrated everything that we learnt in [https://2014.igem.org/Team:ETH_Zurich/human/essay a reflection of our own].</div></td></tr>
<tr><td colspan="2" class="diff-lineno">Line 73:</td>
<td colspan="2" class="diff-lineno">Line 73:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><br/></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><br <ins class="diffchange diffchange-inline">clear="all"</ins>/></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Collaborations ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Collaborations ==</div></td></tr>
</table>Luwidmerhttp://2014.igem.org/wiki/index.php?title=Team:ETH_Zurich/achievements&diff=383378&oldid=prevLuwidmer: /* Predicting the whole system's behavior with a comprehensive fully derived model */2014-10-18T01:37:44Z<p><span class="autocomment">Predicting the whole system's behavior with a comprehensive fully derived model</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 01:37, 18 October 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 55:</td>
<td colspan="2" class="diff-lineno">Line 55:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/overview Predicting the whole system's behavior with a comprehensive fully derived model] ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/overview Predicting the whole system's behavior with a comprehensive fully derived model] ===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>We have a thorough model for the whole Mosai''coli'' system based on a detailed study of every module of this system, including quorum sensing, integrases, and diffusion. We derived the formulae from mass action kinetics and state precisely which approximations we do and why we think we are justified to do so. All our steady state simulations and some of our dynamic simulation results fit to experimental data from our own experiments or found in literature.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>We have a thorough model for the whole Mosai''coli'' system based on a detailed study of every module of this system, including quorum sensing, integrases, and diffusion. We derived the formulae from mass action kinetics and state precisely which approximations we do and why we think we are justified to do so. All our steady state simulations and some of our dynamic simulation results fit to experimental data from our own experiments or found in literature.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:ETH_Zurich_Modeling-overview.png|300px|center|link=https://2014.igem.org/Team:ETH_Zurich/modeling/overview]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:ETH_Zurich_Modeling-overview.png|300px|center|link=https://2014.igem.org/Team:ETH_Zurich/modeling/overview]]</div></td></tr>
</table>Luwidmerhttp://2014.igem.org/wiki/index.php?title=Team:ETH_Zurich/achievements&diff=383362&oldid=prevLuwidmer: /* Predicting the whole system's behavior with a comprehensive fully derived model */2014-10-18T01:37:33Z<p><span class="autocomment">Predicting the whole system's behavior with a comprehensive fully derived model</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 01:37, 18 October 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 55:</td>
<td colspan="2" class="diff-lineno">Line 55:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/overview Predicting the whole system's behavior with a comprehensive fully derived model] ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/overview Predicting the whole system's behavior with a comprehensive fully derived model] ===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>We have a thorough model for the whole Mosai''coli'' system based on a detailed study of every module of this system, including quorum sensing, integrases, and diffusion. We derived the formulae from mass action kinetics and state precisely which approximations we do and why we think we are justified to do so. All our steady state simulations and some of our dynamic simulation results fit to experimental data from our own experiments or found in literature.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>We have a thorough model for the whole Mosai''coli'' system based on a detailed study of every module of this system, including quorum sensing, integrases, and diffusion. We derived the formulae from mass action kinetics and state precisely which approximations we do and why we think we are justified to do so. All our steady state simulations and some of our dynamic simulation results fit to experimental data from our own experiments or found in literature.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:ETH_Zurich_Modeling-overview.png|300px|center|link=https://2014.igem.org/Team:ETH_Zurich/modeling/overview]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[File:ETH_Zurich_Modeling-overview.png|300px|center|link=https://2014.igem.org/Team:ETH_Zurich/modeling/overview]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>
</table>Luwidmerhttp://2014.igem.org/wiki/index.php?title=Team:ETH_Zurich/achievements&diff=383341&oldid=prevLuwidmer: /* Modeling */2014-10-18T01:37:22Z<p><span class="autocomment">Modeling</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 01:37, 18 October 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 52:</td>
<td colspan="2" class="diff-lineno">Line 52:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">[[File:ETH_Zurich_Modeling-overview.png|300px|right|link=https://2014.igem.org/Team:ETH_Zurich/modeling/overview]]</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/overview Predicting the whole system's behavior with a comprehensive fully derived model] ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/overview Predicting the whole system's behavior with a comprehensive fully derived model] ===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>We have a thorough model for the whole Mosai''coli'' system based on a detailed study of every module of this system, including quorum sensing, integrases, and diffusion. We derived the formulae from mass action kinetics and state precisely which approximations we do and why we think we are justified to do so. All our steady state simulations and some of our dynamic simulation results fit to experimental data from our own experiments or found in literature.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>We have a thorough model for the whole Mosai''coli'' system based on a detailed study of every module of this system, including quorum sensing, integrases, and diffusion. We derived the formulae from mass action kinetics and state precisely which approximations we do and why we think we are justified to do so. All our steady state simulations and some of our dynamic simulation results fit to experimental data from our own experiments or found in literature.</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">[[File:ETH_Zurich_Modeling-overview.png|300px|center|link=https://2014.igem.org/Team:ETH_Zurich/modeling/overview]]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><br clear="all" /></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Human Practice ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Human Practice ==</div></td></tr>
</table>Luwidmerhttp://2014.igem.org/wiki/index.php?title=Team:ETH_Zurich/achievements&diff=383292&oldid=prevLuwidmer: /* Predicting the whole system's behavior with a comprehensive fully derived model */2014-10-18T01:36:58Z<p><span class="autocomment">Predicting the whole system's behavior with a comprehensive fully derived model</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 01:36, 18 October 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 50:</td>
<td colspan="2" class="diff-lineno">Line 50:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br clear="all" /></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br clear="all" /></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[[File:ETH_Zurich_Modeling-overview.png|300px|right|link=https://2014.igem.org/Team:ETH_Zurich/modeling/overview]]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/overview Predicting the whole system's behavior with a comprehensive fully derived model] ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/overview Predicting the whole system's behavior with a comprehensive fully derived model] ===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>We have a thorough model for the whole Mosai''coli'' system based on a detailed study of every module of this system, including quorum sensing, integrases, and diffusion. We derived the formulae from mass action kinetics and state precisely which approximations we do and why we think we are justified to do so. All our steady state simulations and some of our dynamic simulation results fit to experimental data from our own experiments or found in literature.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>We have a thorough model for the whole Mosai''coli'' system based on a detailed study of every module of this system, including quorum sensing, integrases, and diffusion. We derived the formulae from mass action kinetics and state precisely which approximations we do and why we think we are justified to do so. All our steady state simulations and some of our dynamic simulation results fit to experimental data from our own experiments or found in literature.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">[[File:ETH_Zurich_Modeling-overview.png|300px|link=https://2014.igem.org/Team:ETH_Zurich/modeling/overview]]</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br/></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><br clear="all" /></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Human Practice ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Human Practice ==</div></td></tr>
</table>Luwidmerhttp://2014.igem.org/wiki/index.php?title=Team:ETH_Zurich/achievements&diff=383211&oldid=prevLuwidmer: /* Modeling */2014-10-18T01:36:19Z<p><span class="autocomment">Modeling</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 01:36, 18 October 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 43:</td>
<td colspan="2" class="diff-lineno">Line 43:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Modeling ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Modeling ==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/int Integrase theoretical characterization] ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/int Integrase theoretical characterization] ===</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[[File:ETH_Zurich_Integrases_sites.png|300px|left|link=https://2014.igem.org/Team:ETH_Zurich/modeling/int]]</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Based on the data presented in Bonnet et al.'s publication "Amplifying genetic logic gates"<sup>[[Team:ETH_Zurich/project/references#refEmergence|[9]]]</sup>, we parameterized a detailed model, resulting in predictions for a significant number of parameters currently not documented in the literature, such as binding affinity of integrases to their sites on the DNA. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Based on the data presented in Bonnet et al.'s publication "Amplifying genetic logic gates"<sup>[[Team:ETH_Zurich/project/references#refEmergence|[9]]]</sup>, we parameterized a detailed model, resulting in predictions for a significant number of parameters currently not documented in the literature, such as binding affinity of integrases to their sites on the DNA. </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">[[File:ETH_Zurich_Integrases_sites.png|300px|link=https://2014.igem.org/Team:ETH_Zurich/modeling/int]]</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><br clear="all" /></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/overview Predicting the whole system's behavior with a comprehensive fully derived model] ===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=== [https://2014.igem.org/Team:ETH_Zurich/modeling/overview Predicting the whole system's behavior with a comprehensive fully derived model] ===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>We have a thorough model for the whole Mosai''coli'' system based on a detailed study of every module of this system, including quorum sensing, integrases, and diffusion. We derived the formulae from mass action kinetics and state precisely which approximations we do and why we think we are justified to do so. All our steady state simulations and some of our dynamic simulation results fit to experimental data from our own experiments or found in literature.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>We have a thorough model for the whole Mosai''coli'' system based on a detailed study of every module of this system, including quorum sensing, integrases, and diffusion. We derived the formulae from mass action kinetics and state precisely which approximations we do and why we think we are justified to do so. All our steady state simulations and some of our dynamic simulation results fit to experimental data from our own experiments or found in literature.</div></td></tr>
</table>Luwidmer