Team:BGU Israel/Project/Artificial Exercise

From 2014.igem.org

(Difference between revisions)
 
(18 intermediate revisions not shown)
Line 1: Line 1:
{{Team:BGU_Israel/Menu}}
{{Team:BGU_Israel/Menu}}
<html>  
<html>  
-
      <section>
+
      <section>
       <div style="height:12px"> </div>
       <div style="height:12px"> </div>
-
     <div style="margin-bottom:10px"> <img src="https://static.igem.org/mediawiki/2014/b/b9/BGU14Exercise.png" width="1080" height="199" alt=""/></div>
+
     <div style="margin-bottom:10px"> <img src="https://static.igem.org/mediawiki/2014/4/43/ArtificialBanner2.png" width="1080" height="199" alt=""/></div>
        
        
        
        
-
         <div class="col3" style="margin-right:16px;height: 300px; width: 235px;">
+
         <div class="col3" style="margin-right:16px;height: 250px; width: 327px;">
         <h3 style="border-bottom:dashed;border-color:#000000">Background<a href="#" onclick="goToByScroll('background'); return false;" class="right"></a></h3>
         <h3 style="border-bottom:dashed;border-color:#000000">Background<a href="#" onclick="goToByScroll('background'); return false;" class="right"></a></h3>
         <p><b>The Problem: </b> Abnormal accumulation of fat in the liver</p>
         <p><b>The Problem: </b> Abnormal accumulation of fat in the liver</p>
         <p><b> The Goal:</b> Increasing energy expenditure and fat degradation, coupled with a negative feedback loop to prevent overheating        </p>
         <p><b> The Goal:</b> Increasing energy expenditure and fat degradation, coupled with a negative feedback loop to prevent overheating        </p>
         </div>
         </div>
-
         <div class="col3" style="margin-right:16px; height: 300px; width: 235px;">
+
         <div class="col3" style="margin-right:16px; height: 250px; width: 327px;">
         <h3 style="border-bottom:dashed;border-color:#000000">Mechanism  <a href="#" onclick="goToByScroll('test'); return false;" class="right"></a></h3>
         <h3 style="border-bottom:dashed;border-color:#000000">Mechanism  <a href="#" onclick="goToByScroll('test'); return false;" class="right"></a></h3>
         <br>
         <br>
Line 19: Line 19:
         </div>
         </div>
          
          
-
        <div class="col3" style="margin-right:16px; height: 300px; width: 235px;">
+
 
-
        <h3 style="border-bottom:dashed;border-color:#000000">Modeling  <a href="#" onclick="goToByScroll('test'); return false;" class="right"></a></h3>
+
-
        <br>
+
-
       
+
-
        </div>
+
          
          
-
         <div class="col3" style="margin-right:16px; height: 300px; margin-right: 0px; width: 235px;">
+
         <div class="col3" style="margin-right:16px; height: 250px; margin-right: 0px; width: 327px;">
-
         <h3 style="border-bottom:dashed;border-color:#000000">Results<a href="#" onclick="goToByScroll('test'); return false;" class="right"></a></h3>  
+
         <h3 style="border-bottom:dashed;border-color:#000000">Results<a href="#" onclick="goToByScroll('test1'); return false;" class="right"></a></h3> <br>
 +
Visualization of HepG2 mitochondria
         <br>
         <br>
Line 39: Line 36:
           </div>
           </div>
           <div id="background" style="height:100px"></div>
           <div id="background" style="height:100px"></div>
-
       <div class="textCont" style="height: 470px;">
+
       <div class="textCont" style="height: 490px;">
       <h3 style="border-bottom:dashed;border-color:#000000">Background </h3>
       <h3 style="border-bottom:dashed;border-color:#000000">Background </h3>
         <div class="col2">
         <div class="col2">
-
         <br>
+
     
-
        <p>One of the major symptoms of the metabolic syndrome is fatty liver – an abnormal accumulation of fat in the liver, whether it comes from our diet or de novo lipogenesis in the body. In fact, this phenomenon is highly correlated with all the components of the metabolic syndrome – high plasma triglycerides, hyperglycemia and insulin resistance. It may also increase the risk for type 2 diabetes and cardiovascular diseases (Bugianesi, Moscatiello, Ciaravella &amp; Marchesini, 2010).</p>
+
         <p align="center"><img src="https://static.igem.org/mediawiki/2014/thumb/e/e2/BGU14_ANI_FATBURN.png/800px-BGU14_ANI_FATBURN.png" height="220"></p>
-
        <p>
+
One of the major symptoms of the metabolic syndrome is fatty liver – an abnormal accumulation of fat in the liver, whether it comes from our diet or de novo lipogenesis in the body. In fact, this phenomenon is highly correlated with all the components of the metabolic syndrome – high plasma triglycerides, hyperglycemia and insulin resistance. It may also increase the risk for type 2 diabetes and cardiovascular diseases (Bugianesi, Moscatiello,Ciaravella&amp;Marchesini, 2010).
-
          In order to cope with the large accumulation of fat in the liver, we looked for a remedy that will enable the body to reach high energy expenditure and, as a result, high rate of fat degradation.  In our searches we encountered DNP. </p> </div>
+
 
 +
  </div>
           <div class="col2">           
           <div class="col2">           
 +
<p></p>
 +
        <p>
 +
        In order to cope with the large accumulation of fat in the liver, we looked for a remedy that will enable the body to reach high energy expenditure, thus leading to high rate of fat degradation. In our search, we learnt about the use of DNP
 +
(2,4 – dinitrophenol) as a dieting aid, in early 1930.  </p>
  <p>
  <p>
-
In the beginning of the 1930s DNP (2,4 – dinitrophenol) was used as a dieting aid. DNP increases the permeability of the inner mitochondrial membrane to protons, allowing them to move from the inner membrane space to the mitochondrial matrix, bypassing ATP synthase. This process weakens the coupling of the electron transport chain to the production of ATP.  In an attempt to raise the pH gradient negatively affected by DNP, a fast oxidation of substrates occurs while the synthesis rate of ATP stays low and oxidation energy is released as heat instead. While DNP was very effective for losing weight, it was found to have a dangerous side effect - the heat released in the uncoupling process can cause fatal hyperthermia. The use of DNP caused numerous amounts of deaths from fever symptoms, and eventually the production of the drug was prohibited but it is still illegally used with a death toll every year. This problem is the main challenge we were faced with in our research – finding a treatment that has the advantages of
+
DNP increases the permeability of the inner mitochondrial membrane to protons, allowing them to move from the inner membrane space to the mitochondrial matrix, bypassing ATP synthase. This process weakens the coupling of the electron transport chain to the production of ATP.  In an attempt to raise the pH gradient, which is negatively affected by DNP, a fast oxidation of substrates occurs while the synthesis rate of ATP stays low and oxidation energy is released as heat instead. While DNP was very effective for losing weight, it has a dangerous side effect - the heat released during the uncoupling process can cause fatal hyperthermia. The use of DNP caused numerous amounts of deaths from fever symptoms, and eventually the production of the drug was prohibited but it is still illegally used with a death toll every year.  
-
<div id="test"></div>DNP but with an ability to control the dangerous overheating.
+
 
   
   
           </p>
           </p>
         </div>
         </div>
       </div>
       </div>
-
          
+
         <div id="test" style="position:relative; bottom:70px"></div>
         <div class="textCont" style="height: 750px; margin-bottom: 12px;">
         <div class="textCont" style="height: 750px; margin-bottom: 12px;">
       <h3 style="border-bottom:dashed;border-color:#000000">Mechanism </h3>
       <h3 style="border-bottom:dashed;border-color:#000000">Mechanism </h3>
Line 60: Line 62:
          
          
                 <p>
                 <p>
-
          DNP is a chemical molecule and as such it is very difficult to control its effect once it is in the body, so we looked for a protein (which is easier to produce and control from within) that works in a similar way to that of DNP, and so we found UCP1.
+
        Our goal in this project was to design a treatment that has the advantages of DNP as uncoupling factor, but with an ability to control the dangerous overheating.
 +
As DNP is a chemical molecule and as such it is very difficult to control its effect once it is in the body, we looked for a protein (which is easier to produce and control from within) that works in a similar way to that of DNP, and so we found UCP1.
 +
 
            
            
           </p>
           </p>
           <p>
           <p>
-
          Uncoupling protein 1 (UCP1) is normally found in the mitochondria of brown adipose tissue, and is used to generate heat. Its mechanism of action is very similar to that of DNP – it also works by uncoupling (as its name might suggest) the two process needed to create ATP, but since UCP1 is a protein and not a chemical compound we had the ability to control its function and expression to our benefit. If we could make this process occur directly in the liver, where UCP1 is not naturally present, it could prove to be very useful for the fast degradation of unnecessary fat. The similarity between UCP1 and DNP also means that the end result of overheating will happen in both cases. So how could we prevent it from happening
+
      Uncoupling protein 1 (UCP1) is normally found in the mitochondria of brown adipose tissue, and is used to generate heat. Its mechanism of action is very similar to that of DNP – it also works by uncoupling (as its name might suggest) the two processes needed to create ATP, but since UCP1 is a protein and not a chemical compound we had the ability to control its function and expression to our benefit. If we could make this process occur directly in the liver, where UCP1 is not naturally present, it could prove to be very useful for the fast degradation of unnecessary fat. The similarity between UCP1 and DNP also means that the end result of overheating will happen in both cases. So how could we prevent it from happening?
           </p>
           </p>
-
          <p>
+
           For that purpose, we used HSP70 promoter. HSP70 (heat shock protein) protects cells from deleterious stresses. Its expression is induced by various physiological stresses, including exposure to heat shock.  The HSP70 promoter contains at least two regulatory domains; the distal domain has been shown to be responsive to heat shock (Wu, Kingston & Morimoto, 1986). The activity of the HSP70 promoter can be induced by moderate hyperthermia, reaching a noticeable function levels at around 39°C.  We planned a genetic circuit with HSP70 promoter and a downstream repressor that will inhibit the synthesis ofUCP1.   </p>
-
           For that purpose we used HSP70 promoter. HSP70 (heat shock protein) protects cells from deleterious stresses. Its expression is induced by various physiological stresses, including exposure to heat shock.  The HSP70 promoter contains at least two regulatory domains; the distal domain has been shown to be responsive to heat shock (Wu, Kingston & Morimoto, 1986). The activity of the HSP70 promoter can be induced by moderate hyperthermia, reaching a noticeable function levels at around 39°C.  We planned a genetic circuit with HSP70 promoter and a downstream repressor that will inhibit the synthesis of UCP1. </p>
+
          
          
         </div>
         </div>
Line 73: Line 76:
          
          
         <div class="col2">
         <div class="col2">
-
   <p>As depicted in figure 1, the heat produced due to the activity of UCP1 will cause temperature to rise, activating HSP70 and inducing the synthesis of a repressor. This repressor will inhibit the synthesis of UCP1, and is its concentration in the mitochondrial membrane will decrease by natural protein degradation, the temperature will go down and the process could start again without reaching an endangering temperature.</p>
+
   <p> As depicted in figure 1, the heat produced due to the activity of UCP1 will cause temperature to rise, activating HSP70 and inducing the synthesis of a repressor. This repressor will inhibit the synthesis of UCP1, and is its concentration in the mitochondrial membrane will be decreased due to natural protein degradation, As a result, the temperature will go down and the process could start again without reaching an endangering temperature.</p>
          
          
            
            
           <p align="center" style="border: thin solid; border-radius: 8px; background: #5FA6B8; font-style: normal; font-weight: 700; font-size: 24px; font-family: Allan, 'Hoefler Text', 'Liberation Serif', Times, 'Times New Roman', serif;"> Click on the picture to check out the machanism <img src="https://static.igem.org/mediawiki/2014/f/f5/BGU14finger-point2.png" width="26px"/></p>
           <p align="center" style="border: thin solid; border-radius: 8px; background: #5FA6B8; font-style: normal; font-weight: 700; font-size: 24px; font-family: Allan, 'Hoefler Text', 'Liberation Serif', Times, 'Times New Roman', serif;"> Click on the picture to check out the machanism <img src="https://static.igem.org/mediawiki/2014/f/f5/BGU14finger-point2.png" width="26px"/></p>
           </p>
           </p>
 +
 
 +
                        <div id="figure1" style="display:block">
         <p align="center">
         <p align="center">
-
         <img id="figure1" src="https://static.igem.org/mediawiki/2014/0/01/BGU14UCP-1-_1.png" onclick="change_pic_artificial()" width="400" style="border: thin solid; cursor: pointer;">
+
        <img src="https://static.igem.org/mediawiki/2014/0/01/BGU14UCP-1-_1.png" onclick="change_pic_artificial()" width="400" style="border: thin solid; cursor: pointer;" />
 +
        </p>
 +
          <p align="center" style="font-size:14px; font-weight:bold; line-height:normal">UCP1 under the regulation of CMV promoter is transfected into the liver cell.</p>
 +
         </div>
 +
        <div id="figure2" style="display:none">
 +
        <p align="center">
 +
        <img src="https://static.igem.org/mediawiki/2014/c/c6/BGU14UCP-1-_2.png" onclick="change_pic_artificial()" width="400" style="border: thin solid; cursor: pointer;" />
 +
        </p>
 +
        <p align="center" style="font-size:14px; font-weight:bold; line-height:normal">UCP-1 is overexpressed, increasing energy expenditure in the cell due to the mitochondrial membrane uncoupling activity and produces heat.</p>
 +
        </div>
 +
        <div id="figure3" style="display:none">
 +
        <p align="center">
 +
        <img  src="https://static.igem.org/mediawiki/2014/4/44/BGU14UCP-1-_3.png" onclick="change_pic_artificial()" width="400" style="border: thin solid; cursor: pointer;" />
         </p>
         </p>
-
         <p align="center" style="font-size:14px; font-weight:bold; line-height:normal">Figure 1 –  Need to put content</p>
+
         <p align="center" style="font-size:14px; font-weight:bold; line-height:normal">Heat induces expression of an orthogonal repressor under the regulation of HSP70 promoter. </p>
-
          
+
        </div>
 +
        <div id="figure4" style="display:none">
 +
        <p align="center">
 +
        <img  src="https://static.igem.org/mediawiki/2014/7/7f/BGU14UCP-1-_4_b.png" onclick="change_pic_artificial()" width="400" style="border: thin solid; cursor: pointer;" />
 +
        </p>
 +
        <p align="center" style="font-size:14px; font-weight:bold; line-height:normal">The repressor binds to an operator downstream the CMV promotor and inhibits UCP-1 synthesis, and so prevents overheating. </p>
 +
        </div>
 +
 
 +
        </div>
 +
        </div>
 +
 
 +
<div class="clear"></div>
 +
<div id="test1" style="position:relative; bottom:70px"></div>
 +
        <div class="textCont" style="height: 770px; margin-bottom: 12px;">
 +
      <h3 style="border-bottom:dashed;border-color:#000000">Results </h3>
 +
 
 +
 
 +
 
 +
        <div class="col2">
 +
<p>We used TMRM (tetramethylrhodamine methyl ester) to assess the ability of UCP1 to collapse membrane potential. Membrane potential-driven accumulation of TMRM within the inner membrane region of healthy functioning mitochondria results in a dramatic increase in TMRM-associated orange fluorescence. When the mitochondrial membrane potential collapses TMRM is dispersed throughout the cell cytosol at a concentration that yields minimal fluorescence upon excitation in the optimal wavelength region.</p>
 +
 
 +
<p>The left series of pictures shows HepG2 cells treated with TMRM of different concentrations (left white light, right – fluorescent), and the right series shows HepG2 previously transfected with pcDNA3.1 UCP1, also treated with TMRM of different concentrations.</p>
 +
<p><img src="https://static.igem.org/mediawiki/2014/1/15/BGU14notefig16.PNG" style="height:360px"/></p>
 +
         </div>
 +
 
 +
        <div class="col2">
 +
<p></p>
 +
<p>There appears to be no visible difference between cells transfected with pcDNA3.1 UCP1 and the normal cell line. Also there was no difference between the different concentrations of TMRM, so next time we can use the lowest one (10 nM) or perhaps even lower.</p>
 +
 
 +
<p><u>Conclusions:</u></p>
 +
 
 +
<p>
 +
Using fluorescent microscopy with TMRM is a semi-quantitative method for the assessment of mitochondrial membrane potential. It could be that even if UCP1 was correctly expressed, it didn’t lower the membrane potential enough for us to see. Next time we could use spectrometry to more quantitatively assess the function of UCP1. Additionally, many times fatty acids are used for the activation of UCP1. We didn’t use fatty acids this time, and it might be the reason for the inactivation of UCP1.
 +
</p>
         </div>
         </div>
         </div>
         </div>
Line 96: Line 146:
</section>
</section>
</html>
</html>
 +
{{Team:BGU_Israel/Footer}}

Latest revision as of 23:59, 17 October 2014

Background

The Problem: Abnormal accumulation of fat in the liver

The Goal: Increasing energy expenditure and fat degradation, coupled with a negative feedback loop to prevent overheating

Mechanism


Overexpression of UCP1 in hepatocytes. Overheating will activate a synthetic construct of a repressor downstream of the heat sensitive promoter HSP70. The repressor will inhibit UCP1 synthesis until temperature returns to its normal state

Results


Visualization of HepG2 mitochondria

Background

One of the major symptoms of the metabolic syndrome is fatty liver – an abnormal accumulation of fat in the liver, whether it comes from our diet or de novo lipogenesis in the body. In fact, this phenomenon is highly correlated with all the components of the metabolic syndrome – high plasma triglycerides, hyperglycemia and insulin resistance. It may also increase the risk for type 2 diabetes and cardiovascular diseases (Bugianesi, Moscatiello,Ciaravella&Marchesini, 2010).

In order to cope with the large accumulation of fat in the liver, we looked for a remedy that will enable the body to reach high energy expenditure, thus leading to high rate of fat degradation. In our search, we learnt about the use of DNP (2,4 – dinitrophenol) as a dieting aid, in early 1930.

DNP increases the permeability of the inner mitochondrial membrane to protons, allowing them to move from the inner membrane space to the mitochondrial matrix, bypassing ATP synthase. This process weakens the coupling of the electron transport chain to the production of ATP. In an attempt to raise the pH gradient, which is negatively affected by DNP, a fast oxidation of substrates occurs while the synthesis rate of ATP stays low and oxidation energy is released as heat instead. While DNP was very effective for losing weight, it has a dangerous side effect - the heat released during the uncoupling process can cause fatal hyperthermia. The use of DNP caused numerous amounts of deaths from fever symptoms, and eventually the production of the drug was prohibited but it is still illegally used with a death toll every year.

Mechanism

Our goal in this project was to design a treatment that has the advantages of DNP as uncoupling factor, but with an ability to control the dangerous overheating. As DNP is a chemical molecule and as such it is very difficult to control its effect once it is in the body, we looked for a protein (which is easier to produce and control from within) that works in a similar way to that of DNP, and so we found UCP1.

Uncoupling protein 1 (UCP1) is normally found in the mitochondria of brown adipose tissue, and is used to generate heat. Its mechanism of action is very similar to that of DNP – it also works by uncoupling (as its name might suggest) the two processes needed to create ATP, but since UCP1 is a protein and not a chemical compound we had the ability to control its function and expression to our benefit. If we could make this process occur directly in the liver, where UCP1 is not naturally present, it could prove to be very useful for the fast degradation of unnecessary fat. The similarity between UCP1 and DNP also means that the end result of overheating will happen in both cases. So how could we prevent it from happening?

For that purpose, we used HSP70 promoter. HSP70 (heat shock protein) protects cells from deleterious stresses. Its expression is induced by various physiological stresses, including exposure to heat shock. The HSP70 promoter contains at least two regulatory domains; the distal domain has been shown to be responsive to heat shock (Wu, Kingston & Morimoto, 1986). The activity of the HSP70 promoter can be induced by moderate hyperthermia, reaching a noticeable function levels at around 39°C. We planned a genetic circuit with HSP70 promoter and a downstream repressor that will inhibit the synthesis ofUCP1.

As depicted in figure 1, the heat produced due to the activity of UCP1 will cause temperature to rise, activating HSP70 and inducing the synthesis of a repressor. This repressor will inhibit the synthesis of UCP1, and is its concentration in the mitochondrial membrane will be decreased due to natural protein degradation, As a result, the temperature will go down and the process could start again without reaching an endangering temperature.

Click on the picture to check out the machanism

UCP1 under the regulation of CMV promoter is transfected into the liver cell.

Results

We used TMRM (tetramethylrhodamine methyl ester) to assess the ability of UCP1 to collapse membrane potential. Membrane potential-driven accumulation of TMRM within the inner membrane region of healthy functioning mitochondria results in a dramatic increase in TMRM-associated orange fluorescence. When the mitochondrial membrane potential collapses TMRM is dispersed throughout the cell cytosol at a concentration that yields minimal fluorescence upon excitation in the optimal wavelength region.

The left series of pictures shows HepG2 cells treated with TMRM of different concentrations (left – white light, right – fluorescent), and the right series shows HepG2 previously transfected with pcDNA3.1 UCP1, also treated with TMRM of different concentrations.

There appears to be no visible difference between cells transfected with pcDNA3.1 UCP1 and the normal cell line. Also there was no difference between the different concentrations of TMRM, so next time we can use the lowest one (10 nM) or perhaps even lower.

Conclusions:

Using fluorescent microscopy with TMRM is a semi-quantitative method for the assessment of mitochondrial membrane potential. It could be that even if UCP1 was correctly expressed, it didn’t lower the membrane potential enough for us to see. Next time we could use spectrometry to more quantitatively assess the function of UCP1. Additionally, many times fatty acids are used for the activation of UCP1. We didn’t use fatty acids this time, and it might be the reason for the inactivation of UCP1.

References

Bugianesi, E., Moscatiello, S., Ciaravella, M.F. & Marchesini, G. (2010).  Insulin resistance in nonalcoholic fatty liver disease.  Curr Pharm Des 16: 1941-1951

Kozak, L.P. & Anunciado-Koza, R. (2008). UCP1: its involvement and utility in obesity. Int. J. Obes., 32 (Suppl. 7), pp. S32–S38

  • Wu, B.J., Kingston, R.E. & Morimoto, R.I. (1986). Human HSP70 promoter contains at least two distinct regulatory domains. Proc. Natl. Acad. Sci. USA 83: 629-633.