Team:Aix-Marseille/Notebook serA

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Notebook



Week 9 : 08/25/2014 ➡ 08/31/2014

  • Clean-up of PCR product number 82 and 83 from 8-8-14 (50µL)

  • SOE reaction (= overlap PCR):

    Mix:

    • PCR product 82= 3µL
    • PCR product 83 = 3µL
    • dNTP 10mM = 2µL
    • Q5 buffer = 8µL
    • Q5 polymerase = 0,5µL
    • H2O qsp 40µL
    • Program:

      1. 98°C 2’
      2. 98°C 20”
      3. 45°C 25”
      4. 72°C 1’
      5. 72°C 10’
      Repeat the steps 3-4-5, 10 times.

  • PCR2: Second PCR round to amplification of serA from the SOE product (26-08-14) with primers 5 and 6, using the iGEM PCR protocol with Q5 polymerase. The temperature of annealing is 60°C

    Result: the amplification of serA is good. Clean-up of serA (PCR2) and elution with 45µL of water.

  • Digestion of pSB1A3 and pSB1C3 during 1h30 at 37°C. Then, inactivation of enzymes during 20’ at 80°C

    Mix:

    • 10µL of plasmid
    • 1µL EcoRI
    • 1µL PstI
    • 5µL Buffer 2.1
    • 33 µL H2O

  • Digestion of the insert (serA) during 1h at 37°C. Then inactivation of enzymes during 20’ at 80°C

    Mix:

    • 20µL of serA
    • 1µL EcoRI
    • 1µL PstI
    • 5µL Buffer 2.1
    • 13 µL H2O
    • NEB ligation:

      • 2µL of digested plasmid
      • 2µL of digested serA insert
      • 2µL ligase buffer
      • 1µL ligase (NEB)
      • 13 µL H2O
      • incubation overnight at 16°C
  • Transformation of 90µL of DH5α super competent cells with 10µL of ligation (pSB1C3-SerA or pSB1A2-SerA). The selective medium is LB + Ampicillin (Ap) 100µg/mL or LB + Chloramphenicol (Cm) 30µg/mL

    pSB1C3-SerA-1 seemed good. It was sent to sequencing. It’s OK