Modeling Overview
Landmine Module
Simple Binding Model
Cooperative Binding Model
EET Module
Flux Balance Analysis of the EET Module
Extracellular Electron Transport in the E. Coli Core Model
Robustness Analysis of the EET Pathway
Phenotypic Phase Planes of the EET Pathway
Flux Variability Analysis
Extracellular Electron Transport in the iJO1366 Model
Conclusions
Deterministic Model of EET Complex Assembly
Extensive Model of EET Complex Assembly
Simplified Model of EET Complex Assembly
Curli Module
Gene Level Modeling
Extensive Gene Level Modeling
Simplified Gene Level Modeling
Cell Level Modeling
Discretization of Gene Level Model
Building the Curli Fibrils
Conductive Radius of the Cell
Colony Level Modeling
Percolation
Resistivity
Modeling Methods
Deterministic Modeling Methods
Flux Balance Analysis Method
Percolation Theory
Graph Theory
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